Tag: DNA barcode

New Study Outlines How Countries Can Build Effective DNA Barcoding Networks

New research in Metabarcoding and Metagenomics provides a blueprint for building a robust, globally adaptable network of DNA barcoding practitioners. 

Aligning with the International Day for Biological Diversity‘s theme of “Acting locally for global impact,” researchers have released a comprehensive blueprint for building a robust, globally adaptable network of DNA barcoding practitioners. 

Heat map illustrating the heterogeneity in the number of available DNA barcode records with species assignment.
Heat map illustrating the heterogeneity in the number of available DNA barcode records with species assignment. Data were retrieved from the BOLD Systems data portal in November 2025. Credit to Kaitetzidou et al., 2026.

DNA barcoding has become a cornerstone for modern species identification and biodiversity monitoring, proving vital for applications ranging from ecological research to conservation and environmental policy. Since its inception, the DNA barcoding community worldwide has been convening under the aegis of the International Barcode of Life (iBOL), which provides necessary global coordination. To implement barcoding at scale, build local capacity, and translate scientific advances into actionable practice, iBOL national nodes have been established since the 2010s

Published in the open-access journal Metabarcoding and Metagenomics, the article “Empowering national capacity for a DNA-based approach to species identification and biodiversity monitoring” by E. Kaitetzidou et al. provides strategic advice on establishing iBOL national nodes. 

Drawing on a survey and workshop conducted under the Horizon Europe Biodiversity Genomics Europe project, this research synthesises experiences from 20 countries, including 17 in Europe, and examines how national nodes are initiated, governed, and sustained. Common challenges included defining scope, securing sustainable funding, harmonising methodologies, and engaging stakeholders. For example, a particularly striking finding was how rarely node coordinators sought guidance from established networks before setting up their own.

The decision-making process and steps taken were almost entirely based on intuition and the experience from other within-country activities, as well as their perceptions of the activities of other nations’ barcoding nodes,

the researchers note. 
Countries are highlighted whose representatives of a national initiative responded to the questionnaire (yellow), attended the workshop (green) or both (yellow–green stripes).
Countries are highlighted whose representatives of a national initiative responded to the questionnaire (yellow), attended the workshop (green) or both (yellow–green stripes). Peru and South Africa are not displayed on the map; however, representatives of their national nodes took part in the survey and the workshop, respectively. Credit to Kaitetzidou et al., 2026.

Central to the paper are ten practical recommendations to ensure the establishment and long-term success of national DNA barcoding nodes. The authors emphasise several key priorities, primarily the construction of comprehensive DNA barcode reference libraries and the critical need to align scientific activities with practical biomonitoring requirements.

Furthermore, they strongly advocate for promoting FAIR (Findable, Accessible, Interoperable, and Reusable) and CARE data principles, alongside implementing focused strategies for capacity building, methodological standardisation, communication, and diverse stakeholder engagement.

Stronger national infrastructures will enhance Europe’s capacity for DNA-based biodiversity monitoring and support metabarcoding and metagenomic research. Building on milestones such as the establishment of iBOL Europe in 2022, these local efforts add up to real progress on species discovery, conservation, and environmental management worldwide. 

This paper has been published with the support of the Biodiversity Genomics Europe project, funded through Horizon Europe, the UK Research & Innovation Fund and the Swiss Confederation (https://biodiversitygenomics.eu/). 

Original source:

Kaitetzidou E, Gadawski P, Goodall-Copestake WP, Dankova G, Gkagkavouzis K, Holak S, Rewicz T, Bącela-Spychalska K, Mamos T, Fantoni K, Jabłońska A, Tończyk G, Trębicki Ł, Aravanopoulos FA, Bruschini C, Bonchev G, Dagher Kharrat MB, Čiampor F, Costa FO, Dapporto L, Ekrem T, Ferreira S, Geiger M, Hausmann A, Hebert PDN, Kalamujić Stroil B, Kamenova S, Kautmanova I, Keskin E, Kučinić M, Lipinskaya T, Mutanen M, Papakostas S, Price B, Ramírez R, Rougerie R, Rulik B, Szucsich N, Van Der Bank M, Triantafyllidis A, Hollingsworth PM, Grabowski M (2026) Empowering national capacity for DNA-based approach to species identification and biodiversity monitoring. Metabarcoding and Metagenomics 10: e183268. https://doi.org/10.3897/mbmg.10.183268

Tiny thorn snail discovered in Panama’s backyard

Close-up view of live individuals of the new species crawling on a leaf.

Discoveries of biodiversity at the Lilliputian scale are more tedious than it is for larger animals like elephants, for example. Furthermore, an analysis producing a DNA barcode – a taxonomic method using a short snippet of an organism’s DNA – is not enough to adequately identify it to the species level.

In the case of tiny thorn snails – appearing as minute white flecks grazing in moist, decomposing leaf litter – it is the shell that provides additional and reliable information needed to verify or question molecular assessment of these otherwise, nondescript critters.

Broadleaf forest litter with white arrows indicating the newly described species on the leaves.

However, at 2 mm, thorn snails are too small and fragile to handle and the few, if any, tangible details on the outside of the shells can only be seen using a high-powered microscope and computed tomographic (CT) images.

This is exactly how the interdisciplinary team of Dr Adrienne Jochum, Naturhistorisches Museum der Burgergemeinde Bern (NMBE) and University of Bern, Dr. Bernhard Ruthensteiner, Zoologische Staatssammlung Muenchen, Germany, Dr. Marian Kampschulte, University Hospital of Giessen and Marburg, Gunhild Martels, Justus-Liebig University Giessen, Jeannette Kneubühler, NMBE and University of Bern, and Dr. Adrien Favre, Senckenberg Research Institute and Natural History Museum Frankfurt, managed to clarify the identity of a new Panamanian species. Their study is published in the open-access journal ZooKeys.

Even though the molecular analysis flagged what it was later to be named as the new to science species, Carychium panamaense, the examination left no shell for the description of the new snail to be completed, let alone to serve as tangible, voucher material in a museum collection available to future researchers. The mini forest compost-grazer had to wait for another five years and Dr. A. Favre, who collected fresh material while traveling in Panama.

The new snail is currently the second member of the family Carychiidae to be discovered in Panama. The first Panamanian, and southern-most member of its kind in the Western Hemisphere, is C. zarzaae, which was also described by Dr. A. Jochum and her team along with two sister species from North and Central America. The study was published in ZooKeys last year.

Much like X-rays showing the degree of damage in a broken bone, CT images visualise the degree of sinuosity of the potato chip-like wedge (lamella) along the spindle-like mast (columella) inside the thorn snail’s shell. These structures provide stability and surface area on which the snail exerts muscular traction while manoeuvring the unwieldy and pointed, signature thorn-like shell into tight nooks and crannies. The alignment and degree of waviness of the lamella on the columella is also used by malacologists (mollusc specialists) to differentiate the species.

These are computed tomographic (CT) images of the new thorn snail species.

Normally, a study of a thorn snail’s shell would require drilling out minute ‘windows’ in the shell by using a fine needle under a high microscope magnification.

“This miserable method requires much patience and dexterity and all too often, the shell springs open into oblivion or disintegrates into dust under pressure,” explains Dr. A. Jochum. “By exposing the delicate lamella using non-manipulative CT imaging, valuable shell material is conserved and unknown diversity in thorn snails becomes widely accessible for further study and subsequent conservation measures.”

The authors are hopeful that C. panamaense and C. zarzaae, which both inhabit the La Amistad International Park, Chiriquí, will remain a conservation priority along with other animalian treasures including the Resplendent Quetzal, Three-Wattled Bellbird and the Crested Eagles.

The park is considered the 1st bi-national biosphere reserve, as it occupies land in both Costa Rica and Panama, and constitutes a UNESCO World Heritage Site since 1990.

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Original Source:

Jochum A, Ruthensteiner B, Kampschulte M, Martels G, Kneubühler J, Favre A (2018) Fulfilling the taxonomic consequence after DNA Barcoding: Carychium panamaense sp. n. (Eupulmonata, Ellobioidea, Carychiidae) from Panama is described using computed tomographic (CT) imaging. ZooKeys 795: 1-12. https://doi.org/10.3897/zookeys.795.29339