Tag: DNA

Using DNA to save Nature: Europe’s Next Biodiversity Frontier 

A landmark alliance of DNA experts across Europe signals the start of an unprecedented effort to build a continent-wide system that applies genomics for protecting European biodiversity.

That Europe’s biodiversity faces unprecedented challenges is nothing new: species are vanishing, ecosystems are degrading, and the policy-makers crafting the policies to address these challenges depend on data that is, at times, scarce. 

What is probably less known is that biodiversity genomics – the one that focuses not on humans, but on other living organisms, like animals and plants – is living a revolution that may well provide just the right knowledge that policy-makers need. Never before has DNA-based science been able to identify species, monitor ecosystems, and understand genetic diversity as cheaply, efficiently, and at scale as it can now.

A landmark commitment

A scientist Institute holding a Covaris g-TUBE, a specialized laboratory consumable used for DNA shearing.
A scientist holding a Covaris g-TUBE. Photo credit to David Lavene /Wellcome Sanger Institute

The European Reference Genome Atlas (ERGA), the International Barcode of Life Europe (iBOL Europe), and the Consortium of European Taxonomic Facilities (CETAF) have signed a historic agreement for biodiversity genomics in Europe. These three large scientific communities have committed to building a coordinated European infrastructure for biodiversity genomics: one that will allow experts to work in a connected system of shared resources, technology, and data. 

The vision has taken shape through the Biodiversity Genomics Europe plus (BGE+) project, and aligns with the environmental goals of the European Commission, which has welcomed steps in this direction. In fact, Costas Kadis, EU Commissioner for fisheries and oceans, recently weighed in on the need for common protocols and comparable data, and pointed to the possibility of achieving this goal through an improved and dedicated biodiversity genomics infrastructure for Europe.

We are entering a new phase. Europe already has extraordinary expertise in taxonomy, genomics, bioinformatics, biodiversity collections, and environmental monitoring. The challenge now is bringing these strengths together in a way that allows us to work at scale in an interconnected system, beyond geographic and political limitations.

says Dimitris Koureas, director of BGE+
A researcher in a white lab coat using a micropipette to transfer a sample into a DNA analysis machine.
A researcher in a white lab coat using a micropipette to transfer a sample into a DNA analysis machine. Photo credit to at the Royal Botanic Garden Edinburgh.

The initiative emphasises one of the biggest challenges for efficient biodiversity research today: scale. Although more than two million species have been formally described worldwide, scientists estimate that millions more remain unknown, and we all know what this means: we cannot protect what we do not know. But understanding and monitoring biodiversity at the speed required by today’s environmental challenges demands new approaches that boost scientific collaboration and interoperability. Initiatives like BGE+ show the way ahead.

In the words of Gabriela Dankova, BGE+ project manager:

Tackling current biodiversity challenges requires effective collaboration of our communities across Europe, open knowledge exchange, solid technical infrastructure, harmonised processes, and, above all, a shared vision. BGE+ brings these elements together, enabling and amplifying the work of biodiversity genomics communities in Europe and beyond.

Scientist conducting genomic research
Scientist conducting genomic research. Photo credit to Naturalis Biodiversity Center.

Scientists know that discovering and documenting all species is only part of the work. They also need to understand how species adapt to environmental change. That is the reason why BGE+ brings together two different strands of genomics. DNA barcoding allows scientists to identify species quickly and accurately. Genome sequencing provides deeper insights into adaptation, evolution, and resilience. Combined with taxonomic expertise and advanced data systems, these tools are creating entirely new possibilities for understanding and protecting nature.

BGE+’s long-term ambition is to establish the services, standards, capacity, and infrastructure needed for biodiversity genomics to become a routine part of how Europe studies, monitors, manages, and restores nature. The stakes could not be higher.

Pensoft’s role in Biodiversity Genomics Europe plus (BGE+)

Within BGE+, Pensoft plays a leading role in knowledge sharing, skills development, and open publishing in biodiversity genomics. Working with research communities across Europe, the company will identify training needs, develop practical learning resources, and support capacity building for BGE+ cascade projects. At the same time, Pensoft will develop publishing workflows that make biodiversity genomics research easier to publish, discover, and reuse, integrating scientific articles with datasets and metadata via the ARPHA Writing Tool to support FAIR principles and ensure research outputs are more transparent, searchable, and interoperable.

Beyond training and publishing, Pensoft will help translate genomic research into policy-relevant evidence by supporting harmonised standards, open data practices, and clearer communication between researchers and decision-makers. The company will also support iBOL Europe’s community engagement and capacity building through training activities, strengthening collaboration between national and European networks, developing distributed DNA barcoding facilities, and promoting the growth of a comprehensive European DNA barcode reference library.

Four New Chameleon Species Found on Mozambique’s Mountaintop ‘Sky Islands’

Four new Sylvan Chameleon species have been discovered in Mozambique’s sky islands, named after Dr. Jane Goodall and Rosalind Franklin.

Tropical rainforest patches perched on isolated granite mountains in northern Mozambique have yielded four new species of Sylvan Chameleons, according to a new study by Prof. Krystal A. Tolley and Dr. Werner Conradie, recently published in Vertebrate Zoology.

The new species have been named after the animal behavior scientist and conservationist Jane Goodall, the chemist Rosalind Franklin, and the concept of “vanishing”,  honouring scientific pioneers while sounding an alarm about disappearing habitats. The research reveals that each “sky island” harbours its own, previously unknown chameleon species, and highlights the urgent need to conserve these fragile forest habitats.

These mountains rise sharply from the surrounding savanna, trapping clouds and rain and creating cool, moist refuges in an otherwise dry landscape This results in each forest being isolated, making them true ‘sky islands’, and because of this isolation, many of their species occur nowhere else on Earth.

says Prof. Tolley.

Why search these mountains?

Localities for the sky islands where Nadzikambia chameleons were sampled, superimposed over digital elevation layer, with the six species of Nadzikambia, including the newly described species.
Localities for the sky islands where Nadzikambia chameleons were sampled, superimposed over digital elevation layer, with the six species of Nadzikambia, including the newly described species. Credit to Tolley and Conradie, 2026.

Until the 2000s, most of northern Mozambique’s sky islands had been poorly surveyed, even compared with other remote parts of Africa. The team set out to investigate whether the isolated forests on each mountain hold unique reptile and amphibian species that evolved there in isolation. With tropical forests across Africa being rapidly cleared in favour of agriculture, the researchers were heavily motivated by a race against time – species could go extinct before they are even discovered.

How were the new species identified?

The team had to first carry out several different surveys of the remote mountains to assess and catalogue the different reptile and amphibian species present. Noting that there were populations of chameleons on each mountain, measurements and samples were taken. Back at the lab, the team used an approach called the General Lineage Species Concept.

This combines different lines of evidence to identify species. In this case, they sequenced four genes (DNA sequences) from Sylvan Chameleon populations from different mountains and compared the genetic data among these. This was then combined with another type of evidence, body features, to come up with a ‘balance of evidence’ as to whether each mountain has its own species. 

Network of nuclear (RAG-1) alleles for Nadzikambia based on phased sequences. Alleles are colour coded according to the proportion of individuals per species having that allele. The sizes of the circles represent the frequency of that allele in the dataset (scaling of circles to left). All branches represent one mutation. Credit to Tolley and Conradie, 2026

Although the chameleons look very similar between different mountains, the DNA told a different story. A phylogeny – a type of family tree built from the genetic data – showed that individuals clustered strictly by mountain. This indicates that each sky island population has been separated for millions of years and does not interbreed with populations on neighbouring peaks.

The similar body shape across species reflects their shared adaptation to life in forest habitats, rather than them being the same species. According to Dr. Conradie “In the same way, African and Asian elephants both look like ‘elephants’ but are distinct species that have evolved similar body forms for similar lifestyles.”

Honouring scientists and a warning about loss

  • Nadzikambia goodallae male species from Mount Ribáuè.
    Nadzikambia goodallae male species from Mount Ribáuè. Photo credit to Prof. Krystal Tolley,
  • Nadzikambia goodallae from Mount Ribáuè.

Behind each of the three names lies a deliberate choice. Nadzikambia goodallae, from Mount Ribáuè, honours Dr. Jane Goodall’s pioneering work on African chimpanzees that has transformed our understanding of animal behaviour and inspired global conservation efforts. This chameleon is endemic to the region.

Before Dr. Jane Goodall became a conservation icon, she spent decades in the forest observing how every species has a role to play in maintaining our fragile ecosystems. Naming this wonderfully unique Sylvan Chameleon for Jane is a fitting tribute to her advocacy and a reminder of the importance of protecting forest landscapes for all animals, including people.

says Anna Rathmann, Executive Director of the Jane Goodall Institute USA.
Nadzikambia franklinae from Mount Namuli.
The newly described Nadzikambia franklinae from Mount Namuli. Photo credit to Werner Conradie.

Nadzikambia franklinae, from Mount Namuli, recognises Rosalind Franklin, whose foundational work on DNA structure underpins the very genetic tools used to identify these species.

Nadzikambia evanescens from Mount Inago
Nadzikambia evanescens from Mount Inago. Photo credit to Prof. Krystall Tolley.

The third species from Mount Inago is named Nadzikambia evanescens, meaning “vanishing”, to draw attention to its disappearing habitat and the many species worldwide that may be lost before they can be described.

The Chiperone sylvan chameleon (Nadzikambia nubila)
The Chiperone sylvan chameleon (Nadzikambia nubila) from Mount Chiperone. Photo credit to Prof. Krystall Tolley.

The fourth species, The Chiperone sylvan chameleon (Nadzikambia nubila), was collected by a stream on Mount Chiperone and takes its name from the “Ciperoni” – the local term for the heavy, cloud-laden weather that brings orographic rainfall to the area. This persistent cloud cover sustains the mountain’s mid-elevation wet forest, and the epithet nubila derives from the Latin nubilus, meaning “cloudy”.

Community-led conservation is key

Intact forest habitat (top), and areas of forest destroyed by slash and burn (middle, bottom) on Mount Inago.
Intact forest habitat (top), and areas of forest destroyed by slash and burn (middle, bottom) on Mount Inago. Credit to Tolley and Conradie

The discoveries come at a time when tropical forests, especially in Africa, are being cleared at alarming rates. The small, isolated forests on Mozambique’s sky islands are particularly vulnerable. The study highlights that local community involvement can make a decisive difference.

On Mount Chiperone, the forest is considered sacred, and cultural values have helped protect both the habitat and its wildlife. Mount Mabu has benefited from more than a decade of community-based conservation.

Together, these two mountains hold the most intact forests surveyed in the study, showing that forest clearance is not an inevitable trade-off for local livelihoods when communities are empowered and supported, and their beliefs are in sync with conservation.

Original source:

Tolley K, Conradie W (2026) Sky Islands of Mozambique harbour cryptic species of chameleons: Description of four new species of sylvan chameleons (Squamata: Chamaeleonidae: Nadzikambia Tilbury, Tolley & Branch, 2006). Vertebrate Zoology 76: 207-246. https://doi.org/10.3897/vz.76.e178403 

New Study Outlines How Countries Can Build Effective DNA Barcoding Networks

New research in Metabarcoding and Metagenomics provides a blueprint for building a robust, globally adaptable network of DNA barcoding practitioners. 

Aligning with the International Day for Biological Diversity‘s theme of “Acting locally for global impact,” researchers have released a comprehensive blueprint for building a robust, globally adaptable network of DNA barcoding practitioners. 

Heat map illustrating the heterogeneity in the number of available DNA barcode records with species assignment.
Heat map illustrating the heterogeneity in the number of available DNA barcode records with species assignment. Data were retrieved from the BOLD Systems data portal in November 2025. Credit to Kaitetzidou et al., 2026.

DNA barcoding has become a cornerstone for modern species identification and biodiversity monitoring, proving vital for applications ranging from ecological research to conservation and environmental policy. Since its inception, the DNA barcoding community worldwide has been convening under the aegis of the International Barcode of Life (iBOL), which provides necessary global coordination. To implement barcoding at scale, build local capacity, and translate scientific advances into actionable practice, iBOL national nodes have been established since the 2010s

Published in the open-access journal Metabarcoding and Metagenomics, the article “Empowering national capacity for a DNA-based approach to species identification and biodiversity monitoring” by E. Kaitetzidou et al. provides strategic advice on establishing iBOL national nodes. 

Drawing on a survey and workshop conducted under the Horizon Europe Biodiversity Genomics Europe project, this research synthesises experiences from 20 countries, including 17 in Europe, and examines how national nodes are initiated, governed, and sustained. Common challenges included defining scope, securing sustainable funding, harmonising methodologies, and engaging stakeholders. For example, a particularly striking finding was how rarely node coordinators sought guidance from established networks before setting up their own.

The decision-making process and steps taken were almost entirely based on intuition and the experience from other within-country activities, as well as their perceptions of the activities of other nations’ barcoding nodes,

the researchers note. 
Countries are highlighted whose representatives of a national initiative responded to the questionnaire (yellow), attended the workshop (green) or both (yellow–green stripes).
Countries are highlighted whose representatives of a national initiative responded to the questionnaire (yellow), attended the workshop (green) or both (yellow–green stripes). Peru and South Africa are not displayed on the map; however, representatives of their national nodes took part in the survey and the workshop, respectively. Credit to Kaitetzidou et al., 2026.

Central to the paper are ten practical recommendations to ensure the establishment and long-term success of national DNA barcoding nodes. The authors emphasise several key priorities, primarily the construction of comprehensive DNA barcode reference libraries and the critical need to align scientific activities with practical biomonitoring requirements.

Furthermore, they strongly advocate for promoting FAIR (Findable, Accessible, Interoperable, and Reusable) and CARE data principles, alongside implementing focused strategies for capacity building, methodological standardisation, communication, and diverse stakeholder engagement.

Stronger national infrastructures will enhance Europe’s capacity for DNA-based biodiversity monitoring and support metabarcoding and metagenomic research. Building on milestones such as the establishment of iBOL Europe in 2022, these local efforts add up to real progress on species discovery, conservation, and environmental management worldwide. 

This paper has been published with the support of the Biodiversity Genomics Europe project, funded through Horizon Europe, the UK Research & Innovation Fund and the Swiss Confederation (https://biodiversitygenomics.eu/). 

Original source:

Kaitetzidou E, Gadawski P, Goodall-Copestake WP, Dankova G, Gkagkavouzis K, Holak S, Rewicz T, Bącela-Spychalska K, Mamos T, Fantoni K, Jabłońska A, Tończyk G, Trębicki Ł, Aravanopoulos FA, Bruschini C, Bonchev G, Dagher Kharrat MB, Čiampor F, Costa FO, Dapporto L, Ekrem T, Ferreira S, Geiger M, Hausmann A, Hebert PDN, Kalamujić Stroil B, Kamenova S, Kautmanova I, Keskin E, Kučinić M, Lipinskaya T, Mutanen M, Papakostas S, Price B, Ramírez R, Rougerie R, Rulik B, Szucsich N, Van Der Bank M, Triantafyllidis A, Hollingsworth PM, Grabowski M (2026) Empowering national capacity for DNA-based approach to species identification and biodiversity monitoring. Metabarcoding and Metagenomics 10: e183268. https://doi.org/10.3897/mbmg.10.183268

5000 Students run ‘bee hotels’ across Canada – DNA reveals who’s checking in

Students at the forefront of conservation or how community science helps gather data on cavity-nesting bees and wasps, enhancing our understanding of ecosystem interactions.

Can students be the front lines of conservation? A new Canada-wide study, published in Metabarcoding and Metagenomics, suggests they can. The efforts of some 5000 students produced data detailed enough to reveal complex ecological networks hidden inside a small PVC and cardboard tube home.

A trap nest installed at a Bees@Schools community science location. Multiple tubes nested in are visible.
A trap nest installed at a Bees@Schools community science location. Multiple tubes nested in are visible. Photo credit to Sage Handler.

They invited schools to volunteer across Canada to install standardised ‘trap nests’ – simple PVC pipe and cardboard tube homes that mimic natural cavities where bees and wasps build nests.

Cavity-nesting bees and wasps play key roles in pollination and pest control, yet their distributions and feeding relationships are often poorly known because they can be small, secretive and difficult to observe directly.

As part of the Bees@Schools community science program, researchers Sage Handler (University of Guelph), Nigel Raine (University of Guelph), and Dirk Steinke (University of Guelph) aimed to address this.

Nesting tubes gathered from one trap nest, ready to be cut open and processed.
Nesting tubes gathered from one trap nest, ready to be cut open and processed.
Photo credit to Sage Handler.

Instead of relying only on traditional identification under a microscope, the researchers used DNA metabarcoding – a method that reads DNA from mixed samples and can detect many species at once.

This allowed the team to identify not only which bee or wasp species built each nest, but also which plant pollen or insect prey were brought back as food. The result was a rich, detailed view of both where cavity-nesting bee and wasp species live and how they interact with plants and other insects.

Rainbow pollen prepared for DNA metabarcoding
A rainbow of pollen prepared for DNA metabarcoding.
Credit: Sage Handler
cavity-nesting bee nest
An intact cavity-nesting bee nest extracted from a nesting tube.
Credit: Sage Handler (Hill)
 

A key outcome of the study was the creation of tripartite networks: maps linking (1) the nesting bee or wasp, (2) its food (pollen or insect prey) and (3) parasites. This kind of network is extremely difficult to build through observation alone, but trap nests can act like tiny ecological time capsules.

Every brood cell contains biological traces and metabarcoding can recover them. Students weren’t just collecting insects, they were collecting entire ecological interaction datasets: the raw material needed to build food-web maps across a whole country!

A lot of people want to contribute to conservation or learn more about biodiversity, but don’t know how. This shows that a small, practical action, like hosting a trap nest, can contribute real data that researchers can use. Community and citizen science is becoming more common, so keep an eye out for research happening in your neighbourhood.

says Handler, the lead author of the study

Original resource:

Handler S, Coveny K, Braukmann TWA, Raine NE, Steinke D (2026) Welcome to Hotel Hymenoptera: monitoring cavity-nesting bee and wasp distribution and their trophic interactions using community science and metabarcoding. Metabarcoding and Metagenomics 10: e139674. https://doi.org/10.3897/mbmg.10.139674

How to ensure biodiversity data are FAIR, linked, open and future-proof?

Now concluded Horizon 2020-funded project BiCIKL shares lessons learned with policy-makers and research funders

Within the Biodiversity Community Integrated Knowledge Library (BiCIKL) project, 14 European institutions from ten countries, spent the last three years elaborating on services and high-tech digital tools, in order to improve the findability, accessibility, interoperability and reusability (FAIR-ness) of various types of data about the world’s biodiversity. These types of data include peer-reviewed scientific literature, occurrence records, natural history collections, DNA data and more.

By ensuring all those data are readily available and efficiently interlinked to each other, the project consortium’s intention is to provide better tools to the scientific community, so that it can more rapidly and effectively study, assess, monitor and preserve Earth’s biological diversity in line with the objectives of the likes of the EU Biodiversity Strategy for 2030 and the European Green Deal. Their targets require openly available, precise and harmonised data to underpin the design of effective measures for restoration and conservation, reminds the BiCIKL consortium.

Since 2021, the project partners at BiCIKL have been working together to elaborate existing workflows and links, as well as create brand new ones, so that their data resources, platforms and tools can seamlessly communicate with each other, thereby taking the burden off the shoulders of scientists and letting them focus on their actual mission: paving the way to healthy and sustainable ecosystems across Europe and beyond.

New BiCIKL project to build a freeway between pieces of biodiversity knowledge

Now that the three-year project is officially over, the wider scientific community is yet to reap the fruits of the consortium’s efforts. In fact, the end of the BiCIKL project marks the actual beginning of a European- and global-wide revolution in the way biodiversity scientists access, use and produce data. It is time for the research community, as well as all actors involved in the study of biodiversity and the implementation of regulations necessary to protect and preserve it, to embrace the lessons learned, adopt the good practices identified and build on the knowledge in existence.

This is why amongst the BiCIKL’s major final research outputs, there are two Policy Briefs meant to summarise and highlight important recommendations addressed to key policy makers, research institutions and funders of research. After all, it is the regulatory bodies that are best equipped to share and implement best practices and guidelines.

Most recently, the BiCIKL consortium published two particularly important policy briefs, both addressed to the likes of the European Commission’s Directorate-General for Environment; the European Environment Agency; the Joint Research Centre; as well as science and policy interface platforms, such as the EU Biodiversity Platform; and also organisations and programmes, e.g. Biodiversa+ and EuropaBON, which are engaged in biodiversity monitoring, protection and restoration. The policy briefs are also to be of particular use to national research funds in the European Union.

One of the newly published policy briefs, titled “Uniting FAIR data through interlinked, machine-actionable infrastructures”, highlights the potential benefits derived from enhanced connectivity and interoperability among various types of biodiversity data. The publication includes a list of recommendations addressed to policy-makers, as well as nine key action points. Understandably, amongst the main themes are those of wider international cooperation; inclusivity and collaboration at scale; standardisation and bringing science and policy closer to industry. Another major outcome of the BiCIKL project: the Biodiversity Knowledge Hub portal is noted as central to many of these objectives and tasks in its role of a knowledge broker that will continue to be maintained and updated with additional FAIR data-compliant services as a living legacy of the collaborative efforts at BiCIKL.

The second policy brief, titled “Liberate the power of biodiversity literature as FAIR digital objects”, shares key actions that can liberate data published in non-machine actionable formats and non-interoperable platforms, so that those data can also be efficiently accessed and used; as well as ways to publish future data according to the best FAIR and linked data practices. The recommendations highlighted in the policy brief intend to support decision-making in Europe; expedite research by making biodiversity data immediately and globally accessible; provide curated data ready to use by AI applications; and bridge gaps in the life cycle of research data through digital-born data. Several new and innovative workflows, linkages and integrative mechanisms and services developed within BiCIKL are mentioned as key advancements created to access and disseminate data available from scientific literature. 

While all policy briefs and factsheets – both primarily targeted at non-expert decision-makers who play a central role in biodiversity research and conservation efforts – are openly and freely available on the project’s website, the most important contributions were published as permanent scientific records in a BiCIKL-branded dedicated collection in the peer-reviewed open-science journal Research Ideas and Outcomes (RIO). There, the policy briefs are provided as both a ready-to-print document (available as supplementary material) and an extensive academic publication.

Currently, the collection: “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective” in the RIO journal contains 60 publications, including policy briefs, project reports, methods papers, conference abstracts, demonstrating and highlighting key milestones and project outcomes from along the BiCIKL’s journey in the last three years. The collection also features over 15 scientific publications authored by people not necessarily involved in BiCIKL, but whose research uses linked open data and tools created in BiCIKL. Their publications were published in a dedicated article collection in the Biodiversity Data Journal.

BiCIKL keeps on adding project outcomes in own collection in RIO Journal

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Visit the Biodiversity Community Integrated Knowledge Library (BiCIKL) project’s website at: https://bicikl-project.eu/.

Don’t forget to also explore the Biodiversity Knowledge Hub (BKH) for yourself at: https://biodiversityknowledgehub.eu/ and watch the BKH’s introduction video. 

Highlights from the BiCIKL project are also accessible on Twitter/X from the project’s hashtag: #BiCIKL_H2020 and handle: @BiCIKL_H2020.

BiCIKL project sums up outcomes and future prospects at a Final GA in Cambridge

All good things come from above! DNA-based food analysis in the Leisler’s bat

Through the analysis of DNA traces in the droppings of a Leisler’s bat colony, researchers at LIB have now identified over 350 different insect species that were consumed by the bats.

Adequate food supply is a fundamental need and requirement for survival. To protect a species, it is often very helpful to know what that species prefers and frequently consumes. Through the analysis of DNA traces in the droppings of a Leisler’s bat colony, researchers at LIB (Leibniz Institute for the Analysis of Biodiversity Change) have now identified an astonishingly high number —over 350— different insect species that were consumed by the bats.

Portrait of the studied species Nyctalus leisleri, Leisler’s bat. © M. Koch

Especially for small animal species and those that are nocturnal, it can be extremely difficult to determine what they feed on. Identifying small prey insects or their remains is also rarely possible down to the exact species or family. In the case of the studied bat species, there is the additional challenge that it is a forest bat species that needs to be located first. “Following bats equipped with radio transmitters in the forest at night is quite special,” says Martin Koch, co-initiator of the study.

Design and installation of the guano trap (3 m) and roost entrance (9 m).

Fortunately — but also complicating matters — there are about 13 different bat species living in the investigated area near Bonn, in the forests of the Natura 2000 area ‘Waldreservat Kottenforst.’ Initially, as part of an EU Life+ project, roosts — the trees where the bats live — of the Leisler’s bats were identified, from which the study’s starting material was then obtained. This was done using a specially developed “guano trap.” The trap consists of approximately 2.2 square meters of mosquito netting stretched rectangularly.

It was installed about 3 meters high on the tree trunk, below the entrance to the roosting cavity at about 9 meters high. During the so-called “twilight swarming” after the nightly insect hunt, the bats return to the roosting cavity and initially circle the tree. They frequently perch briefly next to the cavity entrance and stick a small guano pellet to the trunk. Regularly, pellets fall and land in the mosquito netting under the cavity entrance. This “bat guano” was collected, fixed, and further processed in the laboratory.

“It’s fascinating how much DNA you can extract from a small amount of droppings and how much information we can draw from the DNA: from which bat species does the droppings come, and what has the bat eaten?” explains Dr. Kathrin Langen. Using the DNA contained in the droppings, our researchers were able to determine nine samples from nine different nights when only the target species swarmed around the roosting tree. On six other nights, other bats and a species of mouse were also active around the roosting tree. From the nine samples containing only the guano of the evening bat, an astonishingly rich menu was then reconstructed: the group consumed at least 126 different species of moths, 86 different species of flies and mosquitoes, 48 species of beetles, and a few dozen other various species of bugs, mayflies, caddisflies, and lacewings. Occasionally, spiders, harvestmen, lice, and other small animals were also consumed.

Timeline showing arthropod community composition at order level in the guano of N. leisleri, all three markers combined (COImldg, COIArt, 16S). With the exception of plots showing RRA assigned to major groups depending on sampling date (4C and 4F), read counts were not taken into account. A, D Number of species of each arthropod order detected at each time point; B, E Relative number of species per arthropod order as a percentage of the diet; C, F Species detected in each arthropod order, based on relative read abundances.

From the results, the team was able to deduce which of the three molecular genetic markers used worked best and provided the most species detections, a total of 358. “It’s incredibly satisfying to see what species lists come out at the end of all the lab work and bioinformatics,” says Dr. Sarah Bourlat, Head of the Metabarcoding Section at LIB, Bonn. However, the temporal course of the composition of the consumed insects was also interesting to observe: from late March to late June, the number of species in the guano steadily increases, only to decrease again by mid-August. This aligns very well with the activity patterns of certain insect groups.

The beech moth was the most frequently consumed butterfly, and a mayfly known as the transient virgin or ‘Uferaas’, was the most frequently consumed mayfly. The author team has listed the most important ecological parameters for the 18 key prey species in the study to contribute to better protecting the Leisler’s bat and the habitats needed by its prey insects.

Research article:
Bourlat SJ, Koch M, Kirse A, Langen K, Espeland M, Giebner H, Decher J, Ssymank A, Fonseca VG (2023) Metabarcoding dietary analysis in the insectivorous bat Nyctalus leisleri and implications for conservation. Biodiversity Data Journal 11: e111146. https://doi.org/10.3897/BDJ.11.e111146

News announcement originally published by the Leibniz Institute for the Analysis of Biodiversity Change. Republished with permission.

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Newly established Bulgarian Barcode of Life to support biodiversity conservation in the country

As the latest national node to join the International Barcode of Life Consortium (iBOL), its main task is to coordinate, support, and promote DNA barcoding research in Bulgaria.

On 27 September 2023, during a specialised symposium on DNA barcoding at the Bulgarian Academy of Sciences, the Bulgarian Barcode of Life (BgBOL), a Bulgarian DNA barcoding consortium, was founded. 

Logo of the Bulgarian Barcode of Life (BgBOL), a Bulgarian DNA barcoding consortium and the latest national node to join the International Barcode of Life Consortium (iBOL).

By becoming the latest national node to join the International Barcode of Life Consortium (iBOL), the main task before BgBOL will be to coordinate, support, and promote DNA barcoding research in Bulgaria, with a primary focus on the study and preservation of the country’s biodiversity.

“The Bulgarian Barcode of Life opens up new horizons and opportunities to study and understand the biodiversity in Bulgaria,”

says Dr Georgi Bonchev, Institute of Plant Physiology and Genetics at the Bulgarian Academy of Sciences (BAS).

DNA barcoding is a method to identify individual organisms based on nucleotide sequences captured from short, predefined and standardised segments of DNA.

Dr Georgi Bonchev explains the DNA barcoding method at the specialised symposium held on 27 September 2023 at the Bulgarian Academy of Sciences. 
Photo by the Bulgarian Academy of Sciences.

The formation of the BgBOL consortium is expected to strengthen the network of collaborations, ultimately contributing to the broader dissemination and popularisation of DNA barcoding research in the region.BgBOL was created by seven academic institutions: Institute of Plant Physiology and Genetics (BAS), Institute of Biodiversity and Ecosystem Research, National Museum of Natural History (BAS), Sofia University “St. Kliment Ohridski”, AgroBioInstitute (Agricultural Academy), University of Forestry, and Pensoft in its role of a scientific publisher and tech innovator well-known in the field of biodiversity science.

Prof. Lyubomir Penev joined the symposium with a talk on the publication, dissemination and management of DNA barcoding data. His presentation also touched on the relevant biodiversity data workflows and tools currently in development at Pensoft with the support of the Horizon 2020-funded project BiCIKL.
Photo by the Bulgarian Academy of Sciences.

As part of the event, Pensoft’s founder and CEO Prof. Lyubomir Penev led a discussion on the publication, dissemination and management of DNA barcoding data. His presentation also touched on the relevant biodiversity data workflows and tools currently in development at Pensoft with the support of the Horizon 2020-funded project BiCIKL (abbreviation for Biodiversity Community Integrated Knowledge Library).

“I’d like to congratulate everyone involved in the establishment of the Bulgarian Barcode of Life! This is a huge step forward in advancing DNA barcoding research in Bulgaria and, ultimately, the preservation of the country’s amazing biodiversity,”

comments Prof. Lyubomir Penev.
Visit the BgBOL website and follow the network on LinkedIn and Facebook, where you might also want to join the BgBOL Facebook group!

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About the International Barcode of Life:

The International Barcode of Life Consortium is a research alliance undertaking the largest global biodiversity science initiative: create a digital identification system for life that is accessible to everyone.

iBOL is working to establish an Earth observation system that will discover species, reveal their interactions, and establish biodiversity baselines. The consortium is tracking ecosystems across the planet and exploring symbiomes – the distinct fungal, plant, and animal species associated with host organisms. Our goal is to complete this research and establish baseline data for science and society’s benefit.

A primer in access and benefit-sharing for DNA barcoders

New open access book provides essential background for molecular biodiversity researchers on international policy regarding use and transfer of genetic materials

Molecular biology approaches, such as DNA barcoding, have become part of the standard toolkit for a growing number of biodiversity researchers and practitioners, with an increasing scope of applications in important areas, such as environmental assessment, food inspection, disease control and public education.

Globalization and the advent of bioinformatics are rapidly changing the landscape of international scientific collaborations, which now often span multiple jurisdictions and increase the volume of international data exchange and transactions of biological materials. At the same time, researchers engaging in such partnerships are often unaware of the complex policy frameworks governing such transactions, which may carry reputational and even legal liabilities.

The United Nations Convention on Biological Diversity (1992) and its supplementary agreement, the Nagoya Protocol (ratified in 2014), are the most prominent international treaties designed to provide a legal framework for ensuring the fair and equitable sharing of the benefits arising from research activities involving genetic resources. Although often challenging and, at times, frustrating, it is important for researchers to understand the ramifications of these international agreements, to ensure that their scientific reputations are not tainted with allegations of unfair or unethical practices.

The recent book by Canadian ABS consultant and advisor to Botanic Gardens Conservation International, Kate Davis, and University of Guelph, Canada, researcher and international development expert, Alex Borisenko, offers a perspective on the ramifications of the Convention and the Nagoya Protocol on molecular biodiversity research.

Titled ‘Introduction to Access and Benefit-Sharing and the Nagoya Protocol: What DNA Barcoding Researchers Need to Know‘, it is openly available from Pensoft as an advanced book or PDF document under Creative Commons License.

This contribution is specifically geared towards researchers and practitioners working in the field of DNA barcoding – an actively developing field of biology that advances molecular tools for fast, reliable identification and discovery of species by analyzing short standardized DNA fragments, known as ‘DNA barcode regions’.

This approach, lying at the interface between genomics and biodiversity science, is creating the global knowledge base needed to assess ecosystem services and detect emerging environmental threats, while addressing the imperative of preserving the world’s biodiversity. Carrying out this mission demands close partnerships between biodiversity researchers worldwide, and also relies on large molecular facilities to provide timely, cost-effective and high-quality analytical services, thereby involving active international transactions of biological materials.

Furthermore, the utility of DNA barcoding depends on active open data sharing in ways similar to those established by the medical community for human genomic information.

The book is prefaced by the Executive Secretary of the Convention on Biological Diversity, Dr. Cristiana Pa?ca Palmer. It provides a brief introduction to the Convention and the Nagoya Protocol, and reviews some of their key legal definitions (e.g., ‘genetic resources’, ‘access’, and ‘utilization’). These definitions are considered within the context of terms more familiar to researchers (e.g., tissue samples, DNA extracts, PCR products, trace files) and their daily activities (e.g., field collecting, molecular analysis, DNA sequence assembly).

The main chapters provide further insights into the structure and function of the access and benefit-sharing mechanism at the international policy level and its possible ramifications in form of national laws and institutional requirements.

The text concludes with a set of practical guidelines for researchers and practitioners on the steps that should be taken to ensure due diligence when working with internationally-sourced biological samples. Adhering to these best practices would help build trust and sustain research collegiality among partners involved in international collaboration.

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Original source:

Davis K, Borisenko A (2017) Introduction to Access and Benefit-Sharing and the Nagoya Protocol: What DNA Barcoding Researchers Need to Know. Advanced Books. https://doi.org/10.3897/ab.e22579

Origins of an enigmatic genus of Asian butterflies carrying mythological names decoded

A group of rare Asian butterflies which have once inspired an association with Hindu mythological creatures have been quite a chaos for the experts. In fact, their systematics turned out so confusing that in order to decode their taxonomic placement, scientists had to dig up their roots some 43 million years back.

Now, having shed new light on their ancestors, a team of researchers from the Biodiversity Institute of Ontario at University of Guelph, Agriculture and Agri-Food Canada and University of Vienna, published their findings in the open access journal Zoosystematics and Evolution.

CalinagaTogether, Drs. Valentina Todisco, Vazrick Nazari and Paul Hebert arrived at the conclusion that the enigmatic genus (Calinaga) originated in southeast Tibet in the Eocene as a result of the immense geological and environmental impact caused by the collision between the Indian and Asian subcontinents. However, the diversification within the lineage was far from over at that point. In the following epochs, the butterflies had to adapt to major changes when Indochina drifted away, leading to the isolation of numerous populations; and then again, when the Pleistocene climatic changes took their own toll.

To make their conclusions, the scientists studied 51 specimens collected from a wide range of localities spanning across India, South China, Laos, Vietnam, Myanmar and Thailand. For the first time for the genus, the authors conducted molecular data and combined it with an examination of both genitalia and wing patterns – distinct morphological characters in butterflies. While previous estimates had reported existence of anywhere between one and eleven species in the genus, the present study identified only four, while confirming how easy it is to mislabel samples based on earlier descriptions.

However, the researchers note that they have not sampled specimens from all species listed throughout the years under the name of the genus, so they need additional data to confirm the actual number of valid Calinaga species. The authors are to enrich this preliminary study in the near future, analysing both a larger dataset and type specimens in collaboration with the Natural History Museum of London that holds the largest Calinaga collection.

Despite being beautiful butterflies, the examined species belong to a genus whose name derives from the Hindu mythical reptilian creatures Nāga and a particular one of them – Kaliya, which is believed to live in Yamuna river, Uttar Pradesh, and is notorious for its poison. According to the Hindu myths, no sooner than Kaliya was confronted by the major deity Krishna, did it surrender.

“It seems that the modern taxonomy of Calinaga is in need of a Krishna to conquer these superfluous names and cleanse its taxonomy albeit after careful examination of the types and sequencing of additional material,” comment the authors.

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Original source:

Todisco V, Nazari V, Hebert PDN (2017) Preliminary molecular phylogeny and biogeography of the monobasic subfamily Calinaginae (Lepidoptera, Nymphalidae). Zoosystematics and Evolution 93(2): 255-264. https://doi.org/10.3897/zse.93.10744

Bush Blitz: The largest Australian nature discovery project finds 4 new bee species

Four new native bee species were recognised as part of the largest Australian nature discovery project, called ‘Bush Blitz‘. The South Australian bee specialists used molecular and morphological evidence to prove them as new. Three of the species had narrow heads and long mouth parts – adaptations to foraging on flowers of emu-bushes, which have narrow constrictions at the base. The new species are described in the open access journal ZooKeys.

Bees are important pollinators of crops and native plants, but habitat loss and pesticides are proved to be causing a serious decline in their populations in Europe and the United States of America. Meanwhile, the conservation status of native Australian bees is largely unknown because solid baseline data are unavailable and about one third of the species are as yet unknown to science. Furthermore, identification of Australian bees is hampered by a lack of keys for about half of the named species.

With their present publication, bee specialists Katja Hogendoorn (University of Adelaide), Remko Leijs and Mark Stevens (South Australian Museum) are now trying to make Australian native bees more accessible to the scientific community. The study introduces a new Barcoding of Life project, ‘AUSBS‘, which will be built to contain the barcode sequences of the identified Australian native bees.

In future, this database can help scientists who have molecular tools, but insufficient knowledge of bees, to identify known species. Yet, that is not the only use of the database. “Bee taxonomists can access and use the molecular information to answer specific problems, for example, how certain species are related or whether or not a male and female belong to the same species”, says Dr. Hogendoorn. “And combined with morphological information, the molecular database can help to identify new species”, she adds.

In their publication, the researchers demonstrate the utility of the database. After careful evaluation of the DNA sequence data and subsequent morphological comparison of the collected bees to museum type specimens, they recognised four new species in the genusEuhesma, which they subsequently described.

Three of the species belong to the group of bees that specialise on the flowers of emu-bushes. These bees have evolved narrow faces and very long mouth parts to collect the nectar through a narrow constriction at the base of the flowers. A similar evolution has been already observed in other groups of bees. The fourth species belongs to a different group within this large genus and has a normally shaped head.

So far, the project includes 271 sequences of 120 species that were collected during the Bush Blitz surveys, Australia’s largest nature discovery project. The researchers intend to build on the existing DNA database to cover as many as possible of the Australian species. “It is hoped that this will stimulate native bee research”, says Dr. Hogendoorn. “With about 750 Australian bee species still undescribed and many groups in need of revision there is an enormous job to do”, she concludes.

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Original source:

Hogendoorn K, Stevens M, Leijs R (2015) DNA barcoding of euryglossine bees and the description of new species of Euhesma Michener (Hymenoptera, Colletidae, Euryglossinae).ZooKeys 520: 41-59.doi: 10.3897/zookeys.520.6185