Fossil Record, a Natural History Museum of Berlin journal moves to ARPHA

Having been publishing its historically renowned Deutsche Entomologische Zeitschrift and Zoosystematics and Evolution in partnership with Pensoft since 2014, the Museum extends the collaboration by moving a third signature journal

Having been publishing its historically renowned scientific journals Deutsche Entomologische Zeitschrift (DEZ) and Zoosystematics and Evolution (ZSE) in partnership with the scholarly publisher Pensoft and its ARPHA Platform since 2014, the Natural History Museum of Berlin (Museum für Naturkunde Berlin) now extends the collaboration by moving a third signature journal: Fossil Record

Launched in 1998 under the name Mitteilungen aus dem Museum für Naturkunde Berlin, Geowissenschaftliche Reihe, Fossil Record is the Natural History Museum of Berlin’s palaeontological journal. Published in two issues a year, the open-access scientific outlet covers research from all areas of palaeontology, including the taxonomy and systematics of fossil organisms, biostratigraphy, palaeoecology, and evolution. It deals with all taxonomic groups, including invertebrates, microfossils, plants, and vertebrates.

Following its move to ARPHA, Fossil Record is to utilise the whole package of ARPHA Platform’s services, including its fast-track, end-to-end publishing module, designed to appeal to readers, authors, reviewers and editors alike. 

With ARPHA, each submitted manuscript is carried through the review, editing, publication, dissemination and archiving stages without leaving the platform’s collaboration-centred online environment. The articles are made available in PDF and machine-readable JATS XML formats, as well as semantically enriched HTML for better and mobile-friendly reader experience. 

As a result, the journal’s articles are as easy to discover, access, reuse and cite as possible. Once published, the content is indexed and archived instantaneously and its underlying data exported to relevant specialised databases. Simultaneously, a suite of various metrics is enabled to facilitate tracking the usage of articles and sub-article elements, such as figures and tables.

“We have deeply enjoyed our collaboration with the Natural History Museum of Berlin for the past seven years that started with two great journals moving to our scholarly portfolio and advanced open access. Now, I am delighted to strengthen this wonderful partnership by welcoming Fossil Record and its fantastic editorial team to the families of ARPHA and Pensoft. I am certain that together we will not only repeat the success we had with DEZ and ZSE, but will actually build on it,”

says Prof. Dr Lyubomir Penev, founder and CEO at ARPHA and Pensoft.

About the Natural History Museum of Berlin:

The “Museum für Naturkunde – Leibniz Institute for Evolution and Biodiversity Science” is an integrated research museum within the Leibniz Association. It is one of the most important research institutions worldwide in the areas of biological and geological evolution and biodiversity.

The Museum’s mission is to discover and describe life and earth – with people, through dialogue. As an excellent research museum and innovative communication platform, it wants to engage with and influence the scientific and societal discourse about the future of our planet, worldwide. Its vision, strategy and structure make the museum an excellent research museum. The Natural History Museum of Berlin has research partners in Berlin, Germany and approximately 60 other countries. Over 700,000 visitors per year as well as steadily increasing participation in educational and other events show that the Museum has become an innovative communication centre that helps shape the scientific and social dialogue about the future of our earth.

Why we shouldn’t blame women for gender disparity in science: Perspectives of women in zoology

A Brazilian network of female zoologists aims to oppose gender disparity in science

Guest blog post by Veronica Slobodian

Scientists are part of a rather sexist society and, therefore, ruled by a rather sexist social conduct. Nevertheless, women scientists attempt to thrive despite all setbacks provided by structural sexism (both explicit and implicit). 

Sadly, female scientists are more likely to suffer from harassment, be deprived from recognition for their work, and be more overburdened with household chores compared to their male counterparts. All these situations are being reinforced by social gender stereotypes. 

As a result, many women leave academia because of these hindrances and prejudice in a phenomenon known as “leaking pipeline”. To properly address those setbacks, we must first recognize the structural inequalities in academia, and then provide strategies to recruit, retain and promote students and faculty from underrepresented groups. 

In a rebuttal to an article published in Nature Communications (AlShebli et al. 2020, now retracted), which suggested that female protégés reap more benefits when mentored by men and, therefore, policies to promote female mentors need to be revisited, our group of female zoologists wrote the opinion paper “Why we shouldn’t blame women for gender disparity in academia: Perspectives of Women in Zoology“, now published in the open-access scientific journal Zoologia. Quickly supported by over 500 signatories from all around the world, the piece soon grew into the Women in Zoology network, which brings together zoologists from underrepresented people in the scientific field groups, especially women.

In this reply, we pointed to the methodological flaws and addressed the inherently problematic conclusions of AlShebli et al. (2020). We also demonstrated the gendered academic settings that systematically prejudices women and presented how some of the current diversity policies are positively changing the zoological field in Brazil. While writing our response, we realized these challenges and aches were in fact much more common in the field, so we decided to broaden the network to encompass all female zoologists who want a more fair and diverse Zoology. So, with the “Women in Zoology” network, our aim is to promote female zoologists, investigate their underrepresentation in Brazilian zoology, and propose policies to balance the situation. 

***

Original article: 

Slobodian V, Soares KDA, Falaschi RL, Prado LR, Camelier P, Guedes TB, Leal LC, Hsiou AS, Del-Rio G, Costa ER, Pereira KRC, D’Angiolella AB, de A Sousa S, Diele-Viegas LM (2021) Why we shouldn’t blame women for gender disparity in academia: perspectives of women in zoology. Zoologia 38: 1-9. https://doi.org/10.3897/zoologia.38.e61968 

***

Find more information about the “Women in Zoology” network on Instagram: @mulheresnazoologia.

RIO shifts gears to serve as project-driven knowledge hub

Research Ideas and Outcomes (RIO Journal) upgrades its unique concept to appeal to scientific projects, conference organisers and research institutions

Research Ideas and Outcomes (RIO Journal) upgrades its unique concept to appeal to scientific projects, conference organisers and research institutions

Over the last few years, we’ve been increasingly observing how major funders of research around the world, including the likes of the European Commission, Wellcome, U.S. National Institutes of Health (NIH), Deutsche Forschungsgemeinschaft (DFG) and the Japan Society for the Promotion of Science (JSPS) recognise the research cycle as a continuum, rather than scattered standalone conclusions and reports. 

Hence, as a forward-looking, open science-driven journal Research Ideas and Outcomes (RIO) took it as its own responsibility to encourage scientific project teams, conference organisers and research institutions to bring together unconventional research outputs (e.g. grant proposals, data management plans, project deliverables, policy briefs, conference materials) as well as traditional (e.g. research or review papers, monographs, etc.), including such published elsewhere. To do so, RIO now provides the platform ready to be used as a research knowledge hub, where published outcomes are preserved permanently and easier to share, disseminate, reference and reuse.

Hence, RIO stepped up its game by turning permanent article collections into a one-stop source of diverse research items, where project coordinators, conference organisers or research institutions can not only publish early, interim and conclusive research items as they emerge within a research project, a series of events or the continuous scientific efforts at their lab, but also link relevant publications (i.e. preprints, articles or other documents, published elsewhere) available elsewhere through their metadata. As a result, they will receive a one-stop source under their own branding for every piece of scientific contribution ready to present to funding bodies or prospective collaborators and future research teams.

A permanent topical collection in RIO Journal may include a diverse range of both traditional and unconventional research outputs, as well as links to publications from outside the journal (see What can I publish on the journal’s website). 

Apart from bringing contextually linked research outcomes together, thus prompting findability, readership and citability en masse, RIO’s approach to collections ensures further accessibility by not only having RIO-published articles available in traditional PDF, semantically enriched HTML and minable XML format. The open-science journal has now made it possible for users to add to their collections preprints from ARPHA Preprints, as well as author-formatted PDFs (e.g. project deliverables, reports, policy briefs, etc.) and linked metadata to documents published elsewhere. Thanks to the integration of the journal with the general-purpose open-access repository Zenodo, all items in a collection are archived, and additionally indexed, disseminated and cited.

By focusing on article and preprint collections coming out from a research project, institution or conference, RIO provides a quite specific and unique combination of benefits to all actors of the research process: scientists, project coordinators, funders and institutions: 

  1. Project, institution or conference branding and promotion.
  2. One-stop point for outputs of a research project, institution or conference.
  3. Free publication of author-formatted project outputs (i.e. grant proposals, deliverables, reports, policy briefs, conference materials and others).
  4. Inclusivity through adding articles, preprints and other documents published elsewhere as easy as entering the DOI number of the document.
  5. Credit and recognition for the Collection and Guest editors, who take care to organise and manage the article collection.
  6. Easier discoverability and usability of topically related studies to benefit both authors and readers.
  7. Increased visibility of related papers in a collection, even when these might otherwise not have much exposure.
  8. Simultaneous citation of multiple articles related to a certain subject.
  9. Citation and referencing of the whole collection as a complete entity.
  10.  DOI and citation details for collections and individual articles.

Furthermore, RIO Journal maps all publications to the Sustainable Development Goals  (SDGs), in order to emphasise the real-world impact of each published contribution, by displaying the corresponding badge within the article list. 

Last, but not least, both collections and individual publications in RIO enjoy the variety of default and on-demand science communication services, provided by Pensoft.  

How do project coordinators, funders and institutions benefit from a collection in RIO?

At the time a grant proposal is submitted to a research funder for evaluation, the team behind the proposed project has already put in considerable efforts, resulting in a unique idea with the potential to make a great stride towards the resolution of an outstanding problem in science, if only given the chance. However, too many of these ideas are bound to remain locked away in the archives of those funders, not because they are lacking in scientific value, but due to limited funds.

So, with its launch back in 2015, RIO Journal made it possible to publish and shed light on grant proposals and research ideas in general, similar early research outputs regardless of whether they are eventually funded or not, a novelty in scholarly publishing which earned RIO the SPARC Innovator Award Winner in 2016. To date, the journal has already published 75 grant proposals

Then, imagine what a contribution to science it would make to bring together the whole continuum of knowledge and scientific work all the way from the grant proposal to data  and software management plans, workshop reports, policy briefs and all interim and final deliverables produced within the span of the project!

On the other hand, funders are increasingly evaluating a prospective project’s impact based on its communication strategy. So, why not publish a grant proposal at the time of the submission of your proposal, in order to prove to the funding body that your project is serious about optimising its outreach to both the public and academia? Furthermore, by having an academic journal host any subsequent project deliverable, as a coordinator, you can rest assured that the communication activities of your project remain consistent and efficient.

In an excellent example of a project collection, the EU-funded ICEDIG (Innovation and Consolidation for Large Scale Digitisation of Natural Heritage), led by several major natural history institutions, including the Natural History Museum of London, Naturalis Biodiversity Center (the Netherlands), the French National Museum of Natural History and Helsinki University, brought together policy briefs, project reports, research articles and review papers, in order to provide a fantastic overview of their own research continuum. As a result, future researchers and various stakeholders can easily piece together the key components within the project, in order to learn from, recreate or even build on the experience of ICEDIG.

The Path2Integrity Project Outcomes collection demonstrates how research papers published elsewhere are featured in RIO Journal.

Similarly, conference organisers can make use of their own branded collections to overcome the ephemerality of presented research by collating virtually all valuable conference outputs, including abstracts, posters, presentations, datasets and full-text conference talks. For further convenience, a collection can be divided into subcollections, in order to organise the contribution by type or symposium. What particularly appeals to conference participants is the ARPHA Writing Tool, an intuitive collaborative online environment, which practically guides the user through each step: authoring, submission and pre-submission review, within a set of pre-designed, yet flexible templates available for each type of a conference output, thus sparing them the hassle to familiarise themselves with specific and perplexing formatting requirements

For institutions, RIO offers the opportunity to continuously provide evidence of the scholarly impact of their organisation. To better serve the needs of different labs or research teams, an institution can easily organise their outputs into various subcollections, and also customise their own article types, as well as the available usage tracking systems. Furthermore, by making use of the available pre-paid plans, institutions can support their researchers by covering fully or partially the publication charges at a discounted rate.

***

Find more information regarding the submission and review process, policies and pricing, visit RIO Journal’s website.

Follow RIO Journal on Twitter and Facebook.

Making the most of conferences with modern publishing and indexing practices

Given scientific conferences present academics with the fantastic opportunity to meet up and discuss their latest work, as well as share their vision for the future of their field, it’s no wonder that, historically, the majority of ground-breaking science can easily be traced back to a particular event.

This said, don’t you think that we need to do everything within our powers to ensure the visibility, dissemination and long-term accessibility of research presented and linked to these wonderful drivers of scientific progress that conferences are? Similarly to the care conference organisers take to make sure the event runs smoothly and the attendants are happy with the programme and enjoy themselves, the organisational committee should also be thinking how to preserve all those promising pieces of research well after the event is over.

Here at Pensoft, an open-access scholarly publisher, founded by scientists, we’ve been contemplating for a while now how to encourage and support the community to efficiently open up the valuable outputs to researchers and readers well beyond the publication of abstracts in an abstract book of the conference. 

As a result, we came up with several simple, yet efficient publishing solutions for scientific conferences to collect and contextualise various research outputs either presented at or resulting from the event.

Bear in mind that with any solution, all publications enjoy the benefits seen in conventional research papers, such as:

  • Crossref registration and individual DOI to ensure preservation;
  • Publication in PDF, semantically enhanced HTML and data-minable XML formats to improve readability, accessibility and findability;
  • Indexing and archiving at multiple, industry leading databases to increase visibility;
  • PR and social media promotion to boost outreach to various audiences.

Collections of conference abstracts, posters and presentations

Conference (video) abstracts, posters and presentations are easily the first to fall victims of the ephemerality of an event, yet these are too often the stepping stones to major scientific discoveries. This is why a few years back we launched ARPHA Conference Abstracts (ACA), where conference organisers can open their own collection and provide the participants with submission, review and publication of their abstracts ahead of the conference.

Furthermore, these abstracts can be handled editorially in sub-collections, e.g. the convenors of symposia or working groups within a conference will take care of the abstracts submitted to them, thus spreading the editorial workload across larger teams of editors and organisers.

Not only will conference organisers spare themselves the worries about providing a special platform for abstracts submissions, but this will also facilitate presenting authors, who will be able to easily point to their contribution before, during or after their presentations. On the contrary, the abstracts are assigned with DOIs, published in human-readable PDF and HTML and machine-actionable JATS XML, permanently preserved on ARPHA and Zenodo, and easy to find, access and cite, just like a conventional research paper, providing authors with full credit for their work early on.

Further, with ACA, the conference abstracts can be enhanced into what we call “extended abstracts”, meaning they can also include data, images, videos and multimedia. After the conferences, we can add video recordings of the presentations or graphic files of posters, so that these are visualised on the page of each abstract.

For example, take a look at the conference abstract collection of the Vth International Congress on Biodiversity: “Taxonomy, Speciation and Euro-Mediterranean Biodiversity”.

Conference proceedings

About the time we launched ACA, we also created ARPHA Proceedings, in order to also find a place for full-text conference papers. Similarly, the platform supports dedicated collections, where conference attendants are invited to submit and publish dynamically articles under the imprint of the event.

Conference papers in ARPHA Proceedings can also include data, figures and citations, and can also be updated with video recordings, posters and presentations following the conference.

Check out an example by the VI International Forum on Teacher Education.

Article topical collections and special issues resulting from conferences

Naturally, papers resulting from a particular conference are contextually linked, so a one-stop place to discover topical studies sharing one and the same topic would be greatly appreciated by readers and future researchers. In turn, this would lead to better viewership and citability of the papers in the collection.

With our user-friendly, dedicated workflow for special issues and permanent topical article collections, we’ve made it easy for guest editors across our journals to pitch and manage article collections, in order to bring together valuable and related studies. Using such a collection under the theme of your conference in a suitable journal, you can invite your conference’s participants or, better yet, all scientists working within the field, to submit their work in a nice package of topical science. We’d be happy to assist you with the identification of the most suitable journal for your conference, authors and goals.

See an example from One Ecosystem and the collection “Mapping and assessment of ecosystem condition and ecosystem services across different scales and domains in Europe”, the result from the “Mapping and assessment of ecosystem services – Science in action” conference, held in 2017.

Bringing together traditional and non-conventional research outputs, (e.g. research ideas, grant proposals, conference materials or workshop reports) with RIO Journal’s article collections

Undoubtedly, valuable research outcomes come in many shapes and sizes well beyond research papers, conference abstracts, posters and proceedings. We are firm supporters that every research item, even early and interim outputs, could be of value to the scientist next in line within a particular study.

This is why we launched the award-winning journal Research Ideas and Outcomes (RIO), where your collections can include both conventional and non-traditional research outputs, such as research ideas, posters, workshop reports, forum papers, policy briefs, software and data management plans to name a few. Furthermore, in RIO, you can even link articles or preprints published elsewhere to your collection via their metadata. Similarly to other Pensoft journals, in RIO, you will have the full control to whom you are opening your collection for submissions, allowing you to either limit it to the outcomes coming from your conference or welcome submissions from other researchers as well.

A permanent topical collection in RIO Journal may include a diverse range of both traditional and unconventional research outputs, as well as links to publications from outside the journal (see What can I publish on the journal’s website). 

See the Brainhack 2016 Project Reports, whose aim is to collate reports from the 2016 Brainhack events. Also, check out the collection of the European Biodiversity Observation Network (EU BON) Project, providing a nice example for a wide range of publication types.

***

Don’t hesitate to get in touch to discuss your own case and select the best option for your conference – we’ll be happy to hear from you!

***

Follow Penoft on Twitter and Facebook and subscribe for Pensoft’s blog.

Pensoft partners with ReviewerCredit to certify and reward peer review

Following recent API integration with ReviewerCredits, Pensoft – the scholarly publisher and technology provider – has launched a pilot phase with one of its peer-reviewed, open-access journal: Biodiversity Data Journal (BDJ). Reviewers, who create an account on ReviewerCredits, will automatically record their peer review contributions, which will be certified via the platform and receive rewards and recognition within the scholarly community and fellow scientists.

Following recent API integration with ReviewerCredits, Pensoft – the scholarly publisher and technology provider – has launched a pilot phase with one of its peer-reviewed, open-access journal: Biodiversity Data Journal (BDJ). Reviewers, who create an account on ReviewerCredits, will automatically record their peer review contributions, which will be certified via the platform and receive rewards and recognition within the scholarly community and fellow scientists. 

Apart from a seamless system to showcase their peer review activity, reviewers will also be assigned virtual credits, which can be redeemed for benefits provided by selected partners, including discounted APCs. 

The registration on ReviewerCredits is free. While a reviewer can register any of his/her peer reviews on the platform, reviews for journals partnering with ReviewerCredits earn additional redeemable credits.

Once a reviewer signs in BDJ using their own reviewer account, a pop-up window will recommend that an account on ReviewerCredits is created by using an ORCID ID or an email address. Once the registration is complete, each completed peer review contribution will automatically appear as certified on ReviewerCredits, as soon as the editor submits a final decision on the reviewed manuscript. In line with peer-review confidentiality, the entry displayed on ReviewerCredits will not contain the content of the review, nor the particular paper it is associated with.

“We are happy to partner with ReviewerCredits to further recognise, encourage and reward the contribution of reviewers in BDJ. No one should forget that, at the end of the day, it is up to reviewers to ensure that only good and quality science makes its way in the world. Unfortunately, though, their role in scholarship has traditionally been overlooked and we all need to put in effort to change the status quo,”

comments Prof. Lyubomir Penev, founder and CEO of Pensoft.

“We are excited by the collaboration with Pensoft on this project and to acknowledge BDJ among our prestigious partner journals. Pensoft has proved an extremely competent partner, well aware of the importance for journals to state the value of their peer review process. We work together to strengthen the collaboration between journals and reviewers and we are looking forward to a growing collaboration with Pensoft publications,”

Prof. Giacomo Bellani, co-founder and president of ReviewerCredits, underlines the value and enthusiasm for this new partnership.

About ReviewerCredits:

ReviewerCredits is a startup company, accredited to the University of Milan Bicocca, launched in 2017 by enthusiastic active researchers and scientists. ReviewerCredits is an independent platform dedicated to scientists, Journals and Publishers addressing the peer review process.

All Pensoft journals indexed in Transpose to support transparency in journal policies

All open-access, peer-reviewed academic titles of Pensoft‘s, as well as those using the white-label publishing solution provided by the scholarly publishing platform ARPHA, have their journal policy data fed into the Transpose database, in order to increase their discoverability and transparency.

Thanks to the recent integration with the community-sourced initiative Transpose, details about each journal’s approach to peer review, co-review and preprint publication can be easily accessed, navigated and compared through a user-friendly interface. Visitors can also query the data by journal title, publisher, ISSN or DOI, and apply several filters.

Having estimated that almost 1/3 of the top-cited journals across disciplines do not provide clearly basic information about their editorial policies, including whether they operate blind peer review or not, the team behind Transpose launched the forward-thinking community-sourced initiative with the aim to advance practices in academia and increase awareness and transparency amongst authors, editors and many other stakeholder groups. To highlight the essentiality of free and easy access to editorial policies for a wide range of actors, Transpose have published user testimonials on their website coming from various points of view, including early researchers, supervisors, project investigators, funders, publishing staff, and others.


Recent integration of the scholarly publishing platform ARPHA and Transpose results in the editorial policies of all ARPHA-hosted journals being fed into the associated database. Thus, various stakeholders from across the academic landscape are provided with an easy access to details about the peer review, co-review and preprint policies at each journal via a user-friendly interface.

Pensoft and ARPHA’s founder and CEO Prof. Lyubomir Penev says:

“Having been Open Science advocates from the very beginning, at Pensoft and ARPHA, we have always supported our clients and users in being as transparent as possible. Favourite examples are the open-science journal Research Ideas and Outcomes (RIO), welcoming continuously updatable publications from across the whole research cycle, and Rethinking Ecology, launched to voice innovative and even bold ideas for the purposes of taking swift actions towards the conservation of the environment. The former operates public pre- and post-publication peer review to support efficient collaboration in research, while the latter relies on double-blind peer reviews, in order to encourage researchers of various experience and background to share their inventive ideas in ecology. Obviously, journal policies are and should be crucial when it comes to picking a specific journal over another regardless of the perspective. This is why I am certain that joining Transpose is doing good for all ARPHA-hosted journals, as well as the academic community.”

ASAPbio‘s Executive Director and member of the team behind Transpose, Dr Jessica Polka adds:

“We’re thrilled to incorporate data from Pensoft into Transpose. Making policy information clear and easy to find ensures that authors and reviewers can work with journals that best align with their values — and that scholarly work can be fairly interpreted by everyone, including general readers.”

###

Additional information:

About Transpose:

Transpose is an initiative to build a database of journal policies. It focuses on three areas: open peer review, co-reviewing, and detailed pre-printing policies. It welcomes contributions from anyone, but seeks verification from journals and publishers. The goal of Transpose is to foster new practices while increasing awareness among authors, editors, and other stakeholders, and we seek to provide resources to assist journals in setting, sharing, and clarifying their policies.

Track changes and easy comparison of manuscript versions now available in ARPHA Writing Tool

Monitoring the progress of your manuscript has never been easier!

The eagerly anticipated Track changes feature is now available in ARPHA Writing Tool to further facilitate collaborative authoring in the five academic journals* which currently make use of the ARPHA-XML publishing workflow.

Having tapped into ARPHA’s users constructive feedback, we have also updated our Revision History feature. Now, not only can authors access any past version, as created by their co-authors and collaborators, but they can also compare any two of these at the click of a button.

Track changes

To let co-authors and collaborators easily see any changes they have made, a user needs to simply switch on the Track changes mode. From now on, each individual author’s input will be highlighted to draw the attention of the next user.

 

Track_changes_on

 

Logically, any newly inserted text will appear in green, while the deleted one will be coloured in red. A hover over a highlighted text will show the user who has made the edit.

 

Track_changes_see_user

 

To make overseeing even a single edit impossible, ARPHA Writing Tool has made it mandatory for a user to resolve all suggested changes before either submitting the manuscript or switching off the Track changes mode.

Not overlooking any new input, regardless of the length and complexity of a manuscript, is made even easier thanks to the Prev and Next buttons allowing a user to go through the changes one by one.

 

But what shall you do if you or your co-authors/collaborators happen to forget to switch on the Track changes mode?

 

Compare Manuscript Versions

Our latest update to the Revision history button lets users compare any two past manuscript versions, so that they can see at a glance what has changed between any two set points in time.

Just like before, clicking the Revision history button delivers a list of all manuscript versions along with the users who have created them in a chronological order. Now, however, a tick box next to each of these allows the user to select any two versions and see all edits that have taken place in between.

 

revision_history_compared

 

Again, newly added text shows in green, while the deleted text is crossed over and appears in red.

Step-by-step instructions on both how to track changes and compare past versions are available in the Tips and Tricks guidelines accessible anytime in the header of the writing tool.  

 

Tips_and_tricks

 

###

*The open access scholarly journals Biodiversity Data Journal, Research Ideas and Outcomes (RIO Journal), One Ecosystem, BioDiscovery and Biodiversity Information Science and Standards (BISS) are all making use of the technologically advanced collaboration-centred ARPHA-XML workflow, which features the signature ARPHA Writing Tool.

New partnership between Pensoft and BEXIS 2 encourages Data Paper publications

Following the new partnership between the German open source platform BEXIS 2 and the academic publisher Pensoft, scientists are now able to publish data papers in three of the most innovative Pensoft journals: Biodiversity Data Journal (BDJ)One Ecosystem and Metabarcoding and Metagenomics (MBMG), using EML data packs from BEXIS 2.

In order to encourage and facilitate high-quality data publication, the collaboration allows for researchers to easily store, analyse and manage their data via BEXIS 2, before sharing it with the scientific community in a creditable format.

The newly implemented workflow requires researchers to first download their data from the free open source BEXIS 2 software and, then, upload the data pack on Pensoft’s ARPHA Journal Publishing Platform where the data can be further elaborated to comply to the established Data Paper standards. Within the software, they can work freely on these data.

Having selected a journal and a data paper article template, a single click at an ‘Import a manuscript’ button transfers the data into a manuscript in ARPHA Authoring Tool. Within the collaborative writing tool, the data owner can invite co-authors and peers to help him/her finalise the paper.

Once submitted to a journal, the article undergoes a peer review and data auditing and, if accepted for publication, is published to take advantage of all perks available at any Pensoft journal, including easy discoverability and increased citability.

“I am delighted to have this new partnership between Pensoft and BEXIS 2 announced,” says Pensoft’s founder and CEO Prof. Lyubomir Penev.

“I believe that workflows like ours do inspire scientists to, firstly, refine their data to the best possible quality, and, secondly, make them available to the world, so that these data can benefit the society much faster and more efficiently through collaborative efforts and constructive feedback.”

“With scientists becoming more and more eager to publish research data in data journals like Pensoft’s BDJ, it is important to provide comprehensive and easy workflows for the transition of data from a data management platform like BEXIS 2 to the repository of the data journal without losing or re-entering any information. So we are absolutely delighted that a first version of such data publication workflow is now available to users of BEXIS 2.” says Prof. Birgitta König-Ries, Principle Investigator of BEXIS 2.

The collaboration between Pensoft and BEXIS 2 is set to strengthen in the next few months, when a new import workflow is expected to provide an alternative way to publish datasets.

In 2015, Pensoft launched similar workflows for DataONE, the Global Biodiversity Information Facility (GBIF) and the Long Term Ecological Research Network (LTER).

###

Additional information:

About BEXIS 2:

BEXIS 2 is a free and open source software supporting researchers in managing their data throughout the entire data lifecycle from data collection, documentation, processing, analyzing, to sharing and publishing research data.

BEXIS 2 is a modular scalable platform suitable for working groups and collaborative project consortia with up to several hundred researchers. It has been designed to meet the requirements of researchers in the field of biodiversity, but it is generic enough to serve other communities as well.

BEXIS 2 is developed at Friedrich-Schiller-University Jena together with partners from Max-Planck Institute of Biogeochemistry Jena, Technical University Munich and GWDG Göttingen. The development is funded by the German Science Foundation (DFG).

Articles published in journals on ARPHA indexed by ReadCube for easier discoverability

While research outputs are being published at a rate greater than ever, it is becoming more and more likely to simply pass by the study that is most relevant to your particular interest. This is where ReadCube comes to aid. Now, thanks to the new partnership between ARPHA and ReadCube, all articles in the journals published on Pensoft‘s ARPHA platform, have been indexed and therefore, easily discoverable via ReadCube’s free web, desktop and mobile apps.

“Our mission is to ensure that scholarly literature is not only easily discoverable but also that each article itself is seen as a conduit for deeper discovery, not simply an endpoint,” said Robert McGrath, CEO at ReadCube. “This collaboration with Pensoft supports both these objectives, and we are thrilled to have them as a partner.”

zookeysIn addition to advanced searchability, all Pensoft articles are also available in ReadCube’s Enhanced PDF format. While maintaining the simple and clean look of a standard PDF at first glance, Enhanced PDFs offer interactive feature connecting the reader to relevant information around the article including supplements, article metric, annotation tools, clickable in-line references and even hyperlinked author names which redirect readers to the author’s historical publications.

“I am pleased to see all journals published on ARPHA, which is to say not only the ones published by Pensoft, but also those that use our white-label journal publishing platform, being indexed by ReadCube,” said Pensoft’s founder and CEO Prof Lyubomir Penev. “As a strictly open-access publisher and technological provider with a strong background in semantic content enrichment, Pensoft has always strived to keep research as accessible and discoverable as possible. We are very pleased to collaborate with like-minded people who have their own innovative view on science to be on hand to anyone who asks for it.”

###

 

Additional information:

About ReadCube:

ReadCube develops software to make the world of research more accessible and connected – serving researchers, publishers, academic and commercial organizations.

ReadCube’s web, desktop, and mobile reference management apps, including the ReadCube and Papers brands, dramatically improve the ways researchers find, organize, read, share, and cite research literature

ReadCube’s publisher solutions, adopted by over 70 partners to date, include indexing via Readcube Discover, enhanced PDF viewing and sharing via ReadCube Connect, and article-level ecommerce via ReadCube Checkout.

About ARPHA:

ARPHA is the first end-to-end journal publishing solution that supports the full life cycle of a manuscript, from authoring through submission, peer review, publication and dissemination. With ARPHA, journals and publishers enjoy a complete set of services, which enable tailored, technologically advanced publishing solutions. The platform enables a variety of publishing models through a number of options for branding, production and revenue models to choose from.

Business: Theory and Practice journal moves to the ARPHA white label publishing platform

Vilnius Gediminas Technical University and Pensoft launch a new joint pilot project for the open access peer-reviewed journal BTP

In a new joint pilot project, the open access peer-reviewed journal Business: Theory and Practice (BTP), issued by VGTU Press since 2000, runs on the new journal publishing platform ARPHA, developed by Pensoft. ARPHA provides end-to-end technological solution for all peer-review stages starting from submission to fully functional dedicated new website. Publications are also available in semantically enriched HTML and XML formats, as well as the traditional PDF. The journal’s authors and editors enjoy easily manageable peer-review workflow in ARPHA.

Business: Theory and Practice publishes original research articles and reviews that integrate economic development and globalization, interpretations and consequences of entrepreneurship, strategic management and organizational behavior, theoretical questions and empirical questions of industrial organizations. It covers a variety of fields, including business environment, economic development and globalization, entrepreneurial finance, interpretations and consequences of entrepreneurship, strategic management, organizational behavior, theoretical questions and empirical questions of industrial organization, and case studies.

BTP has opted for the ARPHA-DOC publishing workflow, which provides an individually designed website under the imprint and logo of VGTU Press, a document-based article submission, as well as peer review, publication, hosting and dissemination. The manuscripts submitted to BTP will be subject to double-blind peer review.

“It is a great pleasure to work with the Pensoft team on establishing an innovative publishing platform for Business: Theory and Practice. I am sure the new platform will exceed the expectations of all – the authors, the editors and the readers,” says VGTU Press Director Eleonora Dagiene.

“Academic publishing is in a process of disruptive transition. As a result, small journal publishers and society journals are strongly affected and threatened with decline and even extinction. This is because access to high-level publishing technologies is not easy and, in most cases, not affordable. So, we developed ARPHA specially for them! ARPHA is not only an end-to-end journal publishing platform, covering the whole process from website design, authoring, editorial management and peer-review to publishing and dissemination – it also delivers a wide range of easily customizable end-to-end services, on the choice of the journal. I am glad to see Business: Theory and Practice published by VGTU Press as the first Lithuanian journal coming to the ARPHA platform and becoming a member of ARPHA’s growing family of international partners,” says Pensoft’s founder and CEO Prof. Lyubomir Penev.

The articles accepted for the current issue of 2016 in BTP, published via ARPHA, are already available on the journal’s new website.

ARPHA is open to journals looking for a technologically advanced publishing platform plus all associated services, which can be customized to the journal’s preferences.