Tag: academia

All Pensoft journals indexed in Transpose to support transparency in journal policies

All open-access, peer-reviewed academic titles of Pensoft‘s, as well as those using the white-label publishing solution provided by the scholarly publishing platform ARPHA, have their journal policy data fed into the Transpose database, in order to increase their discoverability and transparency.

Thanks to the recent integration with the community-sourced initiative Transpose, details about each journal’s approach to peer review, co-review and preprint publication can be easily accessed, navigated and compared through a user-friendly interface. Visitors can also query the data by journal title, publisher, ISSN or DOI, and apply several filters.

Having estimated that almost 1/3 of the top-cited journals across disciplines do not provide clearly basic information about their editorial policies, including whether they operate blind peer review or not, the team behind Transpose launched the forward-thinking community-sourced initiative with the aim to advance practices in academia and increase awareness and transparency amongst authors, editors and many other stakeholder groups. To highlight the essentiality of free and easy access to editorial policies for a wide range of actors, Transpose have published user testimonials on their website coming from various points of view, including early researchers, supervisors, project investigators, funders, publishing staff, and others.

Recent integration of the scholarly publishing platform ARPHA and Transpose results in the editorial policies of all ARPHA-hosted journals being fed into the associated database. Thus, various stakeholders from across the academic landscape are provided with an easy access to details about the peer review, co-review and preprint policies at each journal via a user-friendly interface.

Pensoft and ARPHA’s founder and CEO Prof. Lyubomir Penev says:

“Having been Open Science advocates from the very beginning, at Pensoft and ARPHA, we have always supported our clients and users in being as transparent as possible. Favourite examples are the open-science journal Research Ideas and Outcomes (RIO), welcoming continuously updatable publications from across the whole research cycle, and Rethinking Ecology, launched to voice innovative and even bold ideas for the purposes of taking swift actions towards the conservation of the environment. The former operates public pre- and post-publication peer review to support efficient collaboration in research, while the latter relies on double-blind peer reviews, in order to encourage researchers of various experience and background to share their inventive ideas in ecology. Obviously, journal policies are and should be crucial when it comes to picking a specific journal over another regardless of the perspective. This is why I am certain that joining Transpose is doing good for all ARPHA-hosted journals, as well as the academic community.”

ASAPbio‘s Executive Director and member of the team behind Transpose, Dr Jessica Polka adds:

“We’re thrilled to incorporate data from Pensoft into Transpose. Making policy information clear and easy to find ensures that authors and reviewers can work with journals that best align with their values — and that scholarly work can be fairly interpreted by everyone, including general readers.”

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Additional information:

About Transpose:

Transpose is an initiative to build a database of journal policies. It focuses on three areas: open peer review, co-reviewing, and detailed pre-printing policies. It welcomes contributions from anyone, but seeks verification from journals and publishers. The goal of Transpose is to foster new practices while increasing awareness among authors, editors, and other stakeholders, and we seek to provide resources to assist journals in setting, sharing, and clarifying their policies.

Track changes and easy comparison of manuscript versions now available in ARPHA Writing Tool

Monitoring the progress of your manuscript has never been easier!

The eagerly anticipated Track changes feature is now available in ARPHA Writing Tool to further facilitate collaborative authoring in the five academic journals* which currently make use of the ARPHA-XML publishing workflow.

Having tapped into ARPHA’s users constructive feedback, we have also updated our Revision History feature. Now, not only can authors access any past version, as created by their co-authors and collaborators, but they can also compare any two of these at the click of a button.

Track changes

To let co-authors and collaborators easily see any changes they have made, a user needs to simply switch on the Track changes mode. From now on, each individual author’s input will be highlighted to draw the attention of the next user.

Logically, any newly inserted text will appear in green, while the deleted one will be coloured in red. A hover over a highlighted text will show the user who has made the edit.

To make overseeing even a single edit impossible, ARPHA Writing Tool has made it mandatory for a user to resolve all suggested changes before either submitting the manuscript or switching off the Track changes mode.

Not overlooking any new input, regardless of the length and complexity of a manuscript, is made even easier thanks to the Prev and Next buttons allowing a user to go through the changes one by one.

But what shall you do if you or your co-authors/collaborators happen to forget to switch on the Track changes mode?

Compare Manuscript Versions

Our latest update to the Revision history button lets users compare any two past manuscript versions, so that they can see at a glance what has changed between any two set points in time.

Just like before, clicking the Revision history button delivers a list of all manuscript versions along with the users who have created them in a chronological order. Now, however, a tick box next to each of these allows the user to select any two versions and see all edits that have taken place in between.

Again, newly added text shows in green, while the deleted text is crossed over and appears in red.

Step-by-step instructions on both how to track changes and compare past versions are available in the Tips and Tricks guidelines accessible anytime in the header of the writing tool.

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*The open access scholarly journals Biodiversity Data Journal, Research Ideas and Outcomes (RIO Journal), One Ecosystem, BioDiscovery and Biodiversity Information Science and Standards (BISS) are all making use of the technologically advanced collaboration-centred ARPHA-XML workflow, which features the signature ARPHA Writing Tool.

New partnership between Pensoft and BEXIS 2 encourages Data Paper publications

Following the new partnership between the German open source platform BEXIS 2 and the academic publisher Pensoft, scientists are now able to publish data papers in three of the most innovative Pensoft journals: Biodiversity Data Journal (BDJ), One Ecosystem and Metabarcoding and Metagenomics (MBMG), using EML data packs from BEXIS 2.

In order to encourage and facilitate high-quality data publication, the collaboration allows for researchers to easily store, analyse and manage their data via BEXIS 2, before sharing it with the scientific community in a creditable format.

The newly implemented workflow requires researchers to first download their data from the free open source BEXIS 2 software and, then, upload the data pack on Pensoft’s ARPHA Journal Publishing Platform where the data can be further elaborated to comply to the established Data Paper standards. Within the software, they can work freely on these data.

Having selected a journal and a data paper article template, a single click at an ‘Import a manuscript’ button transfers the data into a manuscript in ARPHA Authoring Tool. Within the collaborative writing tool, the data owner can invite co-authors and peers to help him/her finalise the paper.

Once submitted to a journal, the article undergoes a peer review and data auditing and, if accepted for publication, is published to take advantage of all perks available at any Pensoft journal, including easy discoverability and increased citability.

“I am delighted to have this new partnership between Pensoft and BEXIS 2 announced,” says Pensoft’s founder and CEO Prof. Lyubomir Penev.

“I believe that workflows like ours do inspire scientists to, firstly, refine their data to the best possible quality, and, secondly, make them available to the world, so that these data can benefit the society much faster and more efficiently through collaborative efforts and constructive feedback.”

“With scientists becoming more and more eager to publish research data in data journals like Pensoft’s BDJ, it is important to provide comprehensive and easy workflows for the transition of data from a data management platform like BEXIS 2 to the repository of the data journal without losing or re-entering any information. So we are absolutely delighted that a first version of such data publication workflow is now available to users of BEXIS 2.” says Prof. Birgitta König-Ries, Principle Investigator of BEXIS 2.

The collaboration between Pensoft and BEXIS 2 is set to strengthen in the next few months, when a new import workflow is expected to provide an alternative way to publish datasets.

In 2015, Pensoft launched similar workflows for DataONE, the Global Biodiversity Information Facility (GBIF) and the Long Term Ecological Research Network (LTER).

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Additional information:

About BEXIS 2:

BEXIS 2 is a free and open source software supporting researchers in managing their data throughout the entire data lifecycle from data collection, documentation, processing, analyzing, to sharing and publishing research data.

BEXIS 2 is a modular scalable platform suitable for working groups and collaborative project consortia with up to several hundred researchers. It has been designed to meet the requirements of researchers in the field of biodiversity, but it is generic enough to serve other communities as well.

BEXIS 2 is developed at Friedrich-Schiller-University Jena together with partners from Max-Planck Institute of Biogeochemistry Jena, Technical University Munich and GWDG Göttingen. The development is funded by the German Science Foundation (DFG).

Articles published in journals on ARPHA indexed by ReadCube for easier discoverability

While research outputs are being published at a rate greater than ever, it is becoming more and more likely to simply pass by the study that is most relevant to your particular interest. This is where ReadCube comes to aid. Now, thanks to the new partnership between ARPHA and ReadCube, all articles in the journals published on Pensoft‘s ARPHA platform, have been indexed and therefore, easily discoverable via ReadCube’s free web, desktop and mobile apps.

“Our mission is to ensure that scholarly literature is not only easily discoverable but also that each article itself is seen as a conduit for deeper discovery, not simply an endpoint,” said Robert McGrath, CEO at ReadCube. “This collaboration with Pensoft supports both these objectives, and we are thrilled to have them as a partner.”

In addition to advanced searchability, all Pensoft articles are also available in ReadCube’s Enhanced PDF format. While maintaining the simple and clean look of a standard PDF at first glance, Enhanced PDFs offer interactive feature connecting the reader to relevant information around the article including supplements, article metric, annotation tools, clickable in-line references and even hyperlinked author names which redirect readers to the author’s historical publications.

“I am pleased to see all journals published on ARPHA, which is to say not only the ones published by Pensoft, but also those that use our white-label journal publishing platform, being indexed by ReadCube,” said Pensoft’s founder and CEO Prof Lyubomir Penev. “As a strictly open-access publisher and technological provider with a strong background in semantic content enrichment, Pensoft has always strived to keep research as accessible and discoverable as possible. We are very pleased to collaborate with like-minded people who have their own innovative view on science to be on hand to anyone who asks for it.”

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Additional information:

About ReadCube:

ReadCube develops software to make the world of research more accessible and connected – serving researchers, publishers, academic and commercial organizations.

ReadCube’s web, desktop, and mobile reference management apps, including the ReadCube and Papers brands, dramatically improve the ways researchers find, organize, read, share, and cite research literature

ReadCube’s publisher solutions, adopted by over 70 partners to date, include indexing via Readcube Discover, enhanced PDF viewing and sharing via ReadCube Connect, and article-level ecommerce via ReadCube Checkout.

About ARPHA:

ARPHA is the first end-to-end journal publishing solution that supports the full life cycle of a manuscript, from authoring through submission, peer review, publication and dissemination. With ARPHA, journals and publishers enjoy a complete set of services, which enable tailored, technologically advanced publishing solutions. The platform enables a variety of publishing models through a number of options for branding, production and revenue models to choose from.

Business: Theory and Practice journal moves to the ARPHA white label publishing platform

Vilnius Gediminas Technical University and Pensoft launch a new joint pilot project for the open access peer-reviewed journal BTP

In a new joint pilot project, the open access peer-reviewed journal Business: Theory and Practice (BTP), issued by VGTU Press since 2000, runs on the new journal publishing platform ARPHA, developed by Pensoft. ARPHA provides end-to-end technological solution for all peer-review stages starting from submission to fully functional dedicated new website. Publications are also available in semantically enriched HTML and XML formats, as well as the traditional PDF. The journal’s authors and editors enjoy easily manageable peer-review workflow in ARPHA.

Business: Theory and Practice publishes original research articles and reviews that integrate economic development and globalization, interpretations and consequences of entrepreneurship, strategic management and organizational behavior, theoretical questions and empirical questions of industrial organizations. It covers a variety of fields, including business environment, economic development and globalization, entrepreneurial finance, interpretations and consequences of entrepreneurship, strategic management, organizational behavior, theoretical questions and empirical questions of industrial organization, and case studies.

BTP has opted for the ARPHA-DOC publishing workflow, which provides an individually designed website under the imprint and logo of VGTU Press, a document-based article submission, as well as peer review, publication, hosting and dissemination. The manuscripts submitted to BTP will be subject to double-blind peer review.

“It is a great pleasure to work with the Pensoft team on establishing an innovative publishing platform for Business: Theory and Practice. I am sure the new platform will exceed the expectations of all – the authors, the editors and the readers,” says VGTU Press Director Eleonora Dagiene.

“Academic publishing is in a process of disruptive transition. As a result, small journal publishers and society journals are strongly affected and threatened with decline and even extinction. This is because access to high-level publishing technologies is not easy and, in most cases, not affordable. So, we developed ARPHA specially for them! ARPHA is not only an end-to-end journal publishing platform, covering the whole process from website design, authoring, editorial management and peer-review to publishing and dissemination – it also delivers a wide range of easily customizable end-to-end services, on the choice of the journal. I am glad to see Business: Theory and Practice published by VGTU Press as the first Lithuanian journal coming to the ARPHA platform and becoming a member of ARPHA’s growing family of international partners,” says Pensoft’s founder and CEO Prof. Lyubomir Penev.

The articles accepted for the current issue of 2016 in BTP, published via ARPHA, are already available on the journal’s new website.

ARPHA is open to journals looking for a technologically advanced publishing platform plus all associated services, which can be customized to the journal’s preferences.

All Pensoft journals integrated with Publons to recognize your contribution as a reviewer

With both Pensoft and Publons aiming to facilitate scientific research and its introduction to the wide world, it only makes sense for the two to join efforts in a campaign to speed up publications, while giving the rightful credit to reviewers. From now on, anyone who makes this contribution to any of the 15 Pensoft journals will be able to opt-in to get credit for their peer reviews on Publons.

As for the moment, there are already 32 Pensoft reviewers who have added a total of 58 reviews to their Publons personal accounts and already started to receive recognition for their peer input – a kind of contribution that traditionally tends to be largely overlooked in academia. However, you can get a head start by signing-up to Publons and joining the 50,000 peer reviewers that are getting credit for their peer reviews.

Moreover, it is just as incredibly easy to add records of your Pensoft peer reviews to Publons thanks to the presently announced integration. It is while you are compiling your peer review for either Biodiversity Data Journal, BioRisk, Deutsche Entomologische Zeitschrift, Journal of Comparative Cytogenetics, Journal of Hymenoptera Research, MycoKeys, Nature Conservation, NeoBiota, Nota Lepidopterologica, One Ecosystem, PhytoKeys, Research Ideas and Outcomes (RIO), Subterranean Biology, ZooKeys or Zoosystematics and Evolution journal, that you are asked whether you want to opt-in for the service. Then, once you have completed it, you are sent an email with a link to claim your review. To protect your anonymity, it is only the journal’s name and the year of the review that will be visible on your Publons profile.

The only exception to this rule is Pensoft’s next generation Research Ideas and Outcomes (RIO) journal, where the policy of ultimate transparency and openness requires all peer reviews and their authors to be made public. It is also the only Pensoft journal whose article titles will be available on a Publons profile by default. Another distinctive feature of RIO’s – an assigned DOI for each peer review, is also supported in Publons to ensure reviewers get the most out of their contribution.

“Pensoft has a strong history of innovation and we’re excited to be working together to reward the efforts of peer reviewers,” comments the new partnership Publons co-founder Andrew Preston. “It’s also great to see that many Pensoft editors are already Publons users.”

“Crediting reviewers’ voluntary contributions to the quality of scientific publications has always been a problem, especially with the current tremendous increase in the volume of published research outputs. We are happy that Publons has found such a solution and that we can credit our reviewers through recording their activity in an entirely automated way,” added founder and CEO of Pensoft Prof. Lyubomir Penev.