Better data practices advance biodiversity knowledge

A framework to retrieve, refine and align secondary biodiversity data with FAIR standards.

Guest blog post by Nubia Marques et al.

In a world increasingly defined by data-driven decisions, biodiversity research stands to benefit from standardized and accessible data. Despite their importance for research, biodiversity datasets often fail to meet FAIR (Findable, Accessible, Interoperable, Reusable) standards, leading to concerns about data quality, reliability, and accessibility.

To address this, we propose a framework to retrieve, refine and align secondary biodiversity data with FAIR standards, utilizing the Darwin Core model. We followed four steps:

  1. data localization (systematic review)
  2. quality validation
  3. standardization using the Darwin Core standard
  4. sharing and archive in the appropriate repository.

Our approach integrates data validation and quality control steps to ensure that secondary data sets can be trusted.

Our study in Biodiversity Data Journal focused on ecotonal estuarine ecosystems near the easternmost Amazon, where we recovered data from 46,000 individuals representing 3,871 taxa across eight biotic groups (birds, amphibians, reptiles, mammals, fish, phytoplankton, benthos, and plants) from 1985 to 2022. These data were used to illustrate how our strategy improves validation, making the data more reliable for macroecological modeling and conservation management. As data becomes more standardized, researchers around the world will be better equipped to collaborate, identify trends, protect ecosystems, and advance sustainability efforts.

Relationships between numbers of taxa and occurrences gathered through an extensive review of secondary biodiversity data from the Golfão Maranhense area, in the estuarine regions of eastern Amazonia.

Accessible biodiversity data empowers stakeholders and provides critical insights into ecosystem health and species conservation. However, without standardized formats, this data is often fragmented, incomplete, or difficult to compare. By creating a consistent framework for collecting, storing, and sharing data, we are opening the door to more informed decision-making and innovation in biodiversity conservation.

The key to conserving biodiversity is collaboration and transparency. By prioritizing accessible and standardized data, we ensure that vital information reaches those who need it most – whether it’s for scientific study, habitat management or policymaking.

Let’s continue to make biodiversity data a tool for global change!

Research article:

Marques N, Soares CDdeM, Casali DdeM, Guimarães E, Fava F, Abreu JMdaS, Moras L, Silva LGda, Matias R, Assis RLde, Fraga R, Almeida S, Lopes V, Oliveira V, Missagia R, Carvalho E, Carneiro N, Alves R, Souza-Filho P, Oliveira G, Miranda M, Tavares VdaC (2024) Retrieving biodiversity data from multiple sources: making secondary data standardised and accessible. Biodiversity Data Journal 12: e133775. https://doi.org/10.3897/BDJ.12.e133775

This October, TDWG 2023 is coming up to Tasmania & online

As in previous years, the abstracts – already getting published in the BISS journal – are giving a sneak peek of the event!

The annual TDWG conference will be taking place 9-13 October in Tasmania, Australia. Once again, the event will be running in a hybrid format. 

This year, the TDWG conference is hosted by Atlas of Living Australia – the Australian node of GBIF – the Global Biodiversity Information Facility and the National Research Collections Australia.

For an eighth year in a row, all conference abstracts will be submitted to TDWG via the Association’s own journal: Biodiversity Information Science and Standards (BISS Journal), published by Pensoft and powered by the end-to-end publishing platform ARPHA. Using the ‘mini-paper’ format, participants are not only openly and efficiently sharing their work with the world, but they also get to enjoy many features typically exclusive to ‘standard’ research papers, including DOI registration on Crossref, semantic enrichment and structural elements (e.g., tables, figures), all of which are stored as easily exported data.

Apart from an abstract submission portal, BISS Journal also serves as a permanent, openly accessible scholarly source for all contributions concerning the creation, maintenance, and promotion of open community-driven data standards to enable sharing and use of biodiversity data for all.

Learn more about the unique features of BISS and explore past TDWG abstract collections compiled for TDWG’s previous conferences. 

As in previous years, the abstracts will be published ahead of the event itself to provide the community with a sneak preview of the conference. The 2023 collection of abstracts, will allow readers to explore the abstracts by session (e.g., symposia, posters, contributed presentations, keynotes). Sometime after the conference, check out the media tab on most abstracts for slides presented and a link to session video when it is posted on TDWG’s YouTube channel.

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Visit the TDWG 2023 conference website for more information about the scientific program, registration, abstract submission and more. Ahead, during and after the conference, join the conversation on Twitter and Mastodon via #tdwg2023.

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Don’t forget to also follow TDWG (Twitter, Facebook and Mastodon), BISS Journal (Twitter and Facebook) and Pensoft (Twitter and Facebook) on social media.

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Can’t wait until TDWG 2023? Use the time to relive last year’s TDWG 2022 in this blog post and view the TDWG 2022: The Aftermovie.