OpenBiodiv is a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System.
Apart from coordinating the Horizon 2020-funded project BiCIKL, scholarly publisher and technology provider Pensoft has been the engine behind what is likely to be the first production-stage semantic system to run on top of a reasonably-sized biodiversity knowledge graph.
OpenBiodiv is a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System.
As of February 2023, OpenBiodiv contains 36,308 processed articles; 69,596 taxon treatments; 1,131 institutions; 460,475 taxon names; 87,876 sequences; 247,023 bibliographic references; 341,594 author names; and 2,770,357 article sections and subsections.
In fact, OpenBiodiv is a whole ecosystem comprising tools and services that enable biodiversity data to be extracted from the text of biodiversity articles published in data-minable XML format, as in the journals published by Pensoft (e.g. ZooKeys, PhytoKeys, MycoKeys, Biodiversity Data Journal), and other taxonomic treatments – available from Plazi and Plazi’s specialised extraction workflow – into Linked Open Data.
“I believe that OpenBiodiv is a good real-life example of how the outputs and efforts of a research project may and should outlive the duration of the project itself. Something that is – of course – central to our mission at BiCIKL.”
explains Prof Lyubomir Penev, BiCIKL’s Project Coordinator and founder and CEO of Pensoft.
“The basics of what was to become the OpenBiodiv database began to come together back in 2015 within the EU-funded BIG4 PhD project of Victor Senderov, later succeeded by another PhD project by Mariya Dimitrova within IGNITE. It was during those two projects that the backend Ontology-O, the first versions of RDF converters and the basic website functionalities were created,”
he adds.
At the time OpenBiodiv became one of the nine research infrastructures within BiCIKL tasked with the provision of virtual access to open FAIR data, tools and services, it had already evolved into a RDF-based biodiversity knowledge graph, equipped with a fully automated extraction and indexing workflow and user apps.
Currently, Pensoft is working at full speed on new user apps in OpenBiodiv, as the team is continuously bringing into play invaluable feedback and recommendation from end-users and partners at BiCIKL.
As a result, OpenBiodiv is already capable of answering open-ended queries based on the available data. To do this, OpenBiodiv discovers ‘hidden’ links between data classes, i.e. taxon names, taxon treatments, specimens, sequences, persons/authors and collections/institutions.
Thus, the system generates new knowledge about taxa, scientific articles and their subsections, the examined materials and their metadata, localities and sequences, amongst others. Additionally, it is able to return information with a relevant visual representation about any one or a combination of those major data classes within a certain scope and semantic context.
Users can explore the database by either typing in any term (even if misspelt!) in the search engine available from the OpenBiodiv homepage; or integrating an Application Programming Interface (API); as well as by using SPARQL queries.
On the OpenBiodiv website, there is also a list of predefined SPARQL queries, which is continuously being expanded.
“OpenBiodiv is an ambitious project of ours, and it’s surely one close to Pensoft’s heart, given our decades-long dedication to biodiversity science and knowledge sharing. Our previous fruitful partnerships with Plazi, BIG4 and IGNITE, as well as the current exciting and inspirational network of BiCIKL are wonderful examples of how far we can go with the right collaborators,”
Guest blog post by Daniela N. López, Eduardo Fuentes-Contreras, Cecilia Ruiz, Sandra Ide, Sergio A. Estay
Understanding the history of non-native species arrivals to a country can shed light on the origins, pathways of introduction, and the current and future impacts of these species in a new territory. In this sense, collecting this information is important, and sometimes essential, for researchers and decision makers. However, in most cases, reconstructing this history takes a lot of work. Finding antique references is hard work. To add more complexities, changes in the taxonomy of species or groups could be frustrating as we try to track the moment when a species was referenced in the country for the first time, sometimes centuries ago. Of course, we only learned about these issues when, almost seven years ago, we thought that compiling a database for the exotic insects established in Chile would be interesting to people working on invasive species in the country.
Tremex fuscicornis caught in Chile. Photo by Sergio Estay
First, we collected information from physical and electronic books and journals available in our institutional libraries, but soon we noticed that we needed a more significant effort. In Chile, the National Library and The National Congress library allowed us to review and collect information from texts, in many cases, over a hundred years old. We also had to request information from foreign specialized libraries and bookstores. Sometimes, we had to negotiate with private collectors to buy antique books or documents. When we figured the first version of the database was ready, we began a second step for detecting errors, correcting the taxonomy, and completing the information about the reported species.
Ctenarytaina eucalypti individuals and damage in Chile. Photo by Sergio Estay
The analysis began when we finally completed the database. What types of questions could we answer using this data? Was the database complete enough to detect historical, biogeographic, and ecological patterns? Two competing hypotheses were the starting point for the study at this stage. On the one hand, the species that dominated the non-native insect assemblage could have come from original environmental conditions that matched Chile’s. Or, the pool of non-native insects arrived using pathways associated with the country’s economic activities, regardless of their origin.
We found records of almost 600 non-native insect species established in continental Chile. Most species corresponded to Hemiptera (true bugs and scales, among others) from Palaearctic origin and were linked to agriculture and forestry, as we initially hypothesized. These characteristics point to the central role of intercontinental human-mediated transport in structuring non-native insect assemblages in Chile. Non-native insect introductions began immediately after the arrival of Europeans to the central valley of Chile and have shown an enormous acceleration since 1950. Using data on the economic history of Chile, we can preliminary link this acceleration with the strong development in agriculture and forestry in Chile after World War II and the increase in intercontinental air traffic.
Exotic aphids in garden in Chile. Photo by Sergio Estay
The development and analysis of this database gave us some preliminary answers about the ecology of invasive insect species and opened the door to new questions. Also, this is a work in progress. We need the scientific community’s support to improve and correct the records, provide new reports and collect further references to support the database. Our data and analysis may be representative of other countries in South America. Similarities between our countries can facilitate using this information to manage recent introductions and prevent significant economic, social, or environmental damage.
Reference
López DN, Fuentes-Contreras E, Ruiz C, Ide S, Estay SA (2023) A bug’s tale: revealing the history, biogeography and ecological patterns of 500 years of insect invasions. NeoBiota 81: 183-197. https://doi.org/10.3897/neobiota.81.87362
In Thailand, more than 1,000 caddisfly species occur, and a recent study shows that their diversity in the country is even greater than previously suggested.
Caddisflies are an order of aquatic insects with high diversity. In Thailand, more than 1,000 caddisfly species are known to occur, and a recent study in the journal Check Listshows that their diversity in the country is even greater than previously suggested.
Scientists Rungnapa Somnark from Khon Kaen University and Narumon Sangpradub from the Center of Biodiversity Excellence, Chulalongkorn University recorded, for the first time, two caddisfly species that were previously not documented as part of Thailand’s fauna. They were able to catch the insects using black-light traps set up along water streams. The field study took place in the summer of 2017 at Thap Lan National Park, which is a part of Dong Phayayen–Khao Yai Forest Complex, a Natural World Heritage site in the north-eastern Thailand.
The two newly-recorded caddisfly species are Diplectrona erinya, a brown insect previously only known from Tam Dao in Vietnam, and Diplectrona extrema, yellowish-brown in colour and distributed in Borneo, Sumatra, and Java.
They both belong to the genus Diplectrona, which now has 10 documented representatives in Thailand.
The researchers suggest they are probably rare in the country.
“Our study suggests that two newly reported species occur at low densities, which highlights the continuing need for efforts to conserve the [Thap Lan National] park and to conduct more studies on the caddisfly fauna,” they say in conclusion.
Research article:
Somnark R, Sangpradub N (2023) New records of the caddisflies Diplectrona erinya Malicky, 2002 and Diplectrona extrema Banks, 1920 (Trichoptera, Hydropsychidae) from Thailand. Check List 19(1): 13-20. https://doi.org/10.15560/19.1.13
While insect populations continue to decline, taxonomic expertise in Europe is at serious risk, confirms data obtained within the European Red List of Insect Taxonomists, a recent study commissioned by the European Union.
Expertise tends to be particularly poor in the countries with the richest biodiversity, while taxonomists are predominantly male and ageing
While insect populations continue to decline, taxonomic expertise in Europe is at serious risk, confirms data obtained within the European Red List of Insect Taxonomists, a recent study commissioned by the European Union.
Scientists who specialise in the identification and discovery of insect species – also known as insect taxonomists – are declining across Europe, highlights the newly released report by CETAF, International Union for Conservation of Nature (IUCN) and Pensoft. The authors of this report represent different perspectives within biodiversity science, including natural history and research institutions, nature conservation, academia and scientific publishing.
Despite the global significance of its taxonomic collections, Europe has been losing taxonomic expertise at such a rate that, at the moment nearly half (41.4%) of the insect orders are not covered by a sufficient number of scientists. If only EU countries are counted, the number looks only slightly more positive (34.5%). Even the four largest insect orders: beetles (Coleoptera), moths and butterflies (Lepidoptera), flies (Diptera) and wasps, bees, ants and sawflies (Hymenoptera) are only adequately ‘covered’ in a fraction of the countries.
To obtain details about the number, location and productivity of insect taxonomists, the team extracted information from thousands of peer-reviewed research articles published in the last decade, queried the most important scientific databases and reached out to over fifty natural science institutions and their networks. Furthermore, a dedicated campaign reached out to individual researchers through multiple communication channels. As a result, more than 1,500 taxonomists responded by filling in a self-declaration survey to provide information about their personal and academic profile, qualification and activities.
Then, the collected information was assessed against numerical criteria to classify the scientists into categories similar to those used by the IUCN Red List of Threatened SpeciesTM. In the European List of Insect Taxonomists, these range from Eroded Capacity (equivalent to Extinct) to Adequate Capacity (equivalent to Least Concern). The assessment was applied to the 29 insect orders (i.e. beetles, moths and butterflies etc.) to figure out which insect groups the society, conservation practitioners and decision-makers need not be concerned at this point.
Overview of the taxonomic capacity in European countries based upon the Red List Index (colour gradient goes from red (Eroded Capacity) to green (Adequate Capacity). Image by the European Red List of Taxonomists consortium.
On a country level, the results showed that Czechia, Germany and Russia demonstrate the most adequate coverage of insect groups. Meanwhile, Albania, Azerbaijan, Belarus, Luxembourg, Latvia, Ireland and Malta turned out to be the ones with insufficient number of taxonomists.
In most cases, the availability of experts seems to correlate to GDP, as wealthiest countries tend to invest more in their scientific institutions.
What is particularly worrying is that the lack of taxonomic expertise is more evident in the countries with the greatest species diversity. This trend may cause even more significant problems in the knowledge and conservation of these species, further aggravating the situation. Thus, the report provides further evidence about a global pattern where the countries richest in biodiversity are also the ones poorest in financial and human resources.
The research team also reminds that it is European natural history museums that host the largest scientific collections – including insects – brought from all over the globe. As such, Europe is responsible to the world for maintaining taxonomic knowledge and building adequate expert capacity.
Other concerning trends revealed in the new report are that the community of taxonomists is also ageing and – especially in the older groups – male-dominated (82%).
“One reason to have fewer young taxonomists could be due to limited opportunities for professional training (…), and the fact that not all professional taxonomists provide it, as a significant number of taxonomists are employed by museums and their opportunities for interaction with university students is probably not optimal. Gender bias is very likely caused by multiple factors, including fewer opportunities for women to be exposed to taxonomic research and gain an interest, unequal offer of career opportunities and hiring decisions. A fair-playing field for all genders will be crucial to address these shortcomings and close the gap.”
comments Ana Casino, CETAF’s Executive Director.
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Entomologist examining a small insect under a microscope. Photo by anton_shoshin/stockadobe.com.
The European Red List of Taxonomists concludes with practical recommendations concerning strategic, science and societal priorities, addressed to specific decision-makers.
The authors give practical examples and potential solutions in support of their call to action.
For instance, in order to develop targeted and sustainable funding mechanisms to support taxonomy, they propose the launch of regular targeted Horizon Europe calls to study important insect groups for which taxonomic capacity has been identified to be at a particularly high risk of erosion.
To address specific gaps in expertise – such as the ones reported in the publication from Romania – a country known for its rich insect diversity, yet poor in taxonomic expertise – the consortium proposes the establishment of a natural history museum or entomological research institute that is well-fitted to serve as a taxonomic facility.
Amongst the scientific recommendations, the authors propose measures to ensure better recognition of taxonomic work at a multidisciplinary level. The scientific community, including disciplines that use taxonomic research, such as molecular biology, medicine and agriculture – need to embrace universal standards and rigorous conduct for the correct citation of scientific publications by insect taxonomists.
Societal engagement is another important call. “It is pivotal to widely raise awareness of the value and impact of taxonomy and the work of taxonomists. We must motivate young generations to join the scientific community” points Prof. Lyubomir Penev, Managing Director of Pensoft.
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“Understanding taxonomy is a key to understanding the extinction risk of species. If we strategically target the gaps in expert capacity that this European Red List identifies, we can better protect biodiversity and support the well-being and livelihoods of our societies. With the climate crisis at hand, there is no time left to waste,”
added David Allen from the IUCN Red List team.
“As a dedicated supporter of the IUCN Red List, I am inspired by this call to strengthen the capacity, guided by evidence and proven scientific methods. However, Europe has much more scientific capacity than most biodiversity-rich regions of the world. So, what this report particularly highlights is the need for massively increasing investment in scientific discovery, and building taxonomic expertise, around the world,”
said Jon Paul Rodríguez, Chair of the IUCN Species Survival Commission.
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Follow and join the conversation on Twitter using the #RedListTaxonomists hashtag.
In Europe, the Asian (or “Yellow-legged”) Hornet (Vespa velutina) is a predator of insects such as honeybees, hoverflies, and other wasps, and poses serious risks to apiculture, biodiversity and pollination services. This hornet can measure up to 4cm in length and, like all other social wasps, is capable of delivering a painful sting, although it is not aggressive by nature. Thought to have been introduced into Europe from China in 2004, the Asian Hornet has rapidly spread across the continent. While it has been thus far controlled in Britain, the hornet is well established across mainland Europe and the Channel Islands. In April 2021, the Irish National Parks and Wildlife Service confirmed that a single specimen had been found, ‘alive but dying’ in a private dwelling in Dublin, marking the first Irish record of this species.
The Asian Hornet specimen recovered in Dublin. Image by Dr Aidan O’Hanlon
The circumstances of how the specimen arrived in the Irish capital are not known, but with the area’s extensive regional, national and international connectivity, there can be many possible pathways of introduction. In an Irish context, it was of particular interest to determine whether this individual originated in Europe/Britain or represented a potential new invasion source from within its native range in Southeast Asia.
The specimen was deposited in the National Museum of Ireland and identified by Dr. Aidan O’Hanlon, who suggested performing genetic analysis to determine its provenance. In collaboration with scientists from the School of Biological, Earth and Environmental Sciences (BEES), University College Cork, and partners on the EU Atlantic Positive Project (which aims to establish Europe-wide methodologies for the control of the Asian hornet), genetic analysis was performed and data were compared with those from specimens provided from several other locations across Europe. The researchers then published their findings in Journal of Hymenoptera Research.
“Earlier work had demonstrated that Asian hornets in Europe apparently shared the same genetic lineage, based on studies of a single gene. We took this a step further and looked at two additional genes which would be more sensitive in detecting variation within the invasive population”, explains Dr. Eileen Dillane of BEES.
Data from all three genetic markers confirmed that not only are Asian hornets in Europe of a single pedigree, but are likely descended from a single mated queen hornet that somehow arrived in France in 2004. Furthermore, this lineage has not yet been described within the native range.
“Our research has revealed the remarkable potential for population expansion of eusocial insects in invaded areas, even when original genetic diversity is extremely low”, says Dr. Simon Harrison, who is part of the research team .
Female V. velutina specimen from Dublin, Ireland.
These findings are both bad news and good news for the control of the Asian hornet in Europe. Whilst single mated queens can evidently rapidly re-colonise areas from where hornets have been eradicated (for example, where intensive efforts have destroyed all nests in an area), the close relatedness of all individuals of the Asian hornet in Europe offers hope for eradication methods based on biological control.
In the Irish context, it is unlikely that this is the beginning of a larger-scale invasion, as the climate and habitat landscape of Ireland is likely less than ideal for the Asian hornet, which requires higher summer temperatures and a greater supply of energy-rich food. “Nonetheless, climate change is likely to increase the threat of a successful invasion in the future, so vigilance against this species must be maintained”, the authors of the study advise.
Original source:
Dillane E, Hayden R, O’Hanlon A, Butler F, Harrison S (2022) The first recorded occurrence of the Asian hornet (Vespa velutina) in Ireland, genetic evidence for a continued single invasion across Europe. Journal of Hymenoptera Research 93: 131-138. https://doi.org/10.3897/jhr.93.91209
A new native bee species with a dog-like “snout” has been discovered in Perth bushland though Curtin-led research that sheds new light on our most important pollinators.
Published in the Journal of Hymenoptera Research, author Dr Kit Prendergast, from the Curtin School of Molecular and Life Sciences, has named the new species after her pet dog Zephyr after noticing a protruding part of the insect’s face looked similar to a dog’s snout, and to acknowledge the role her dog played in providing emotional support during her PhD.
Dr Prendergast said the rare and remarkable finding would add to existing knowledge about our evolving biodiversity and ensure the bees, named Leioproctus zephyr, were protected by conservation efforts.
“When I first examined the specimens that I collected during my PhD surveys discovering the biodiversity of native bees in urbanised regions of the southwest WA biodiversity hotspot, I was instantly intrigued by the bee’s very unusual face,” Dr Prendergast said.
Insects in general are so diverse and so important, yet we don’t have scientific descriptions or names for so many of them.
Dr Kit Prendergast
“When I went to identify it, I found it matched no described species, and I was sure that if it was a known species, it would be quite easy to identify given how unusual it was in appearance.
“You can only confirm a particular species once you look at them under a microscope and go through the long process of trying to match their characteristics against other identified species, then going through museum collections.
“When perusing the WA Museum’s Entomology collection, I discovered that a few specimens of Leioproctus zephyrus had first been collected in 1979, but it had never been scientifically described.”
Dr Prendergast said she was excited to play a role in making this species known and officially naming them.
“Insects in general are so diverse and so important, yet we don’t have scientific descriptions or names for so many of them,” Dr Prendergast said.
“The Leioproctus zephyr has a highly restricted distribution, only occurring in seven locations across the southwest WA to date, and have not been collected from their original location. They were entirely absent from residential gardens and only present at five urban bushland remnants that I surveyed, where they foraged on two plant species of Jacksonia.
“Not only is this species fussy, they also have a clypeus that looks like a snout. Hence, I named them after my dog Zephyr. She has been so important to my mental health and wellbeing during the challenging period of doing a PhD and beyond.”
Through DNA barcoding, Dr Prendergast was able to confirm that the new species was most closely related to other species of unidentified Leioproctus.
For the 37th time, experts from across the world to share and discuss the latest developments surrounding biodiversity data and how they are being gathered, used, shared and integrated across time, space and disciplines.
Between 17th and 21st October, about 400 scientists and experts took part in a hybrid meeting dedicated to the development, use and maintenance of biodiversity data, technologies, and standards across the world.
For the 37th time, the global scientific and educational association Biodiversity Information Standards (TDWG) brought together experts from all over the globe to share and discuss the latest developments surrounding biodiversity data and how they are being gathered, used, shared and integrated across time, space and disciplines.
This was the first time the event happened in a hybrid format. It was attended by 160 people on-site, while another 235 people joined online.
The TDWG 2022 conference saw plenty of networking and engaging discussions with as many as 160 on-site attendees and another 235 people, who joined the event remotely.
“It’s wonderful to be in the Balkans and Bulgaria for our Biodiversity Information and Standards (TDWG) 2022 conference! Everyone’s been so welcoming and thoughtfully engaged in conversations about biodiversity information and how we can all collaborate, contribute and benefit,”
“Our TDWG mission is to create, maintain and promote the use of open, community-driven standards to enable sharing and use of biodiversity data for all,”
she added.
Prof Lyubomir Penev (Pensoft) and Deborah Paul (TDWG) at TDWG 2022.
“We are proud to have been selected to be the hosts of this year’s TDWG annual conference and are definitely happy to have joined and observed so many active experts network and share their know-how and future plans with each other, so that they can collaborate and make further progress in the way scientists and informaticians work with biodiversity information,”
said Pensoft’s founder and CEO Prof. Lyubomir Penev.
“As a publisher of multiple globally renowned scientific journals and books in the field of biodiversity and ecology, at Pensoft we assume it to be our responsibility to be amongst the first to implement those standards and good practices, and serve as an example in the scholarly publishing world. Let me remind you that it is the scientific publications that present the most reliable knowledge the world and science has, due to the scrutiny and rigour in the review process they undergo before seeing the light of day,”
he added.
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In a nutshell, the main task and dedication of the TDWG association is to develop and maintain standards and data-sharing protocols that support the infrastructures (e.g., The Global Biodiversity Information Facility – GBIF), which aggregate and facilitate use of these data, in order to inform and expand humanity’s knowledge about life on Earth.
It is the goal of everyone at TDWG to let scientists interested in the world’s biodiversity to do their work efficiently and in a manner that can be understood, shared and reused.
It is the goal of everyone volunteering their time and expertise to TDWG to enable the scientists interested in the world’s biodiversity to do their work efficiently and in a manner that can be understood, shared and reused by others. After all, biodiversity data underlie everything we know about the natural world.
If there are optimised and universal standards in the way researchers store and disseminate biodiversity data, all those biodiversity scientists will be able to find, access and use the knowledge in their own work much more easily. As a result, they will be much better positioned to contribute new knowledge that will later be used in nature and ecosystem conservation by key decision-makers.
On Monday, the event opened with welcoming speeches by Deborah Paul and Prof. Lyubomir Penev in their roles of the Chair of TDWG and the main host of this year’s conference, respectively.
The opening ceremony continued with a keynote speech by Prof. Pavel Stoev, Director of the Natural History Museum of Sofia and co-host of TDWG 2022.
Prof. Pavel Stoev (Natural History Museum of Sofia) with a presentation about the known and unknown biodiversity of Bulgaria during the opening plenary session of TDWG 2022.
He walked the participants through the fascinating biodiversity of Bulgaria, but also the worrying trends in the country associated with declining taxonomic expertise.
He finished his talk with a beam of hope by sharing about the recently established national unit of DiSSCo, whose aim – even if a tad too optimistic – is to digitise one million natural history items in four years, of which 250,000 with photographs. So far, one year into the project, the Bulgarian team has managed to digitise more than 32,000 specimens and provide images to 10,000 specimens.
The plenary session concluded with a keynote presentation by renowned ichthyologist and biodiversity data manager Dr. Richard L. Pyle, who is also a manager of ZooBank – the key international database for newly described species.
Keynote presentation by Dr Richard L. Pyle (Bishop Museum, USA) at the opening plenary session of TDWG 2022.
In his talk, he highlighted the gaps in the ways taxonomy is being used, thereby impeding biodiversity research and cutting off a lot of opportunities for timely scientific progress.
“There are simple things we can do to change how we use taxonomy as a tool that would dramatically improve our ability to conduct science and understand biodiversity. There is enormous value and utility within existing databases around the world to understand biodiversity, how threatened it is, what impacts human activity has (especially climate change), and how to optimise the protection and preservation of biodiversity,”
he said in an interview for a joint interview by the Bulgarian News Agency and Pensoft.
“But we do not have easy access to much of this information because the different databases are not well integrated. Taxonomy offers us the best opportunity to connect this information together, to answer important questions about biodiversity that we have never been able to answer before. The reason meetings like this are so important is that they bring people together to discuss ways of using modern informatics to greatly increase the power of the data we already have, and prioritise how we fill the gaps in data that exist. Taxonomy, and especially taxonomic data integration, is a very important part of the solution.”
Pyle also commented on the work in progress at ZooBank ten years into the platform’s existence and its role in the next (fifth) edition of the International Code of Zoological Nomenclature, which is currently being developed by the International Commission of Zoological Nomenclature (ICZN).
“We already know that ZooBank will play a more important role in the next edition of the Code than it has for these past ten years, so this is exactly the right time to be planning new services for ZooBank. Improvements at ZooBank will include things like better user-interfaces on the web to make it easier and faster to use ZooBank, better data services to make it easier for publishers to add content to ZooBank as part of their publication workflow, additional information about nomenclature and taxonomy that will both support the next edition of the Code, and also help taxonomists get their jobs done more efficiently and effectively. Conferences like the TDWG one are critical for helping to define what the next version of ZooBank will look like, and what it will do.”
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During the week, the conference participants had the opportunity to enjoy a total of 140 presentations; as well as multiple social activities, including a field trip to Rila Monastery and a traditional Bulgarian dinner.
TDWG 2022 conference participants document their species observations on their way to Rila Monastery.
While going about the conference venue and field trip localities, the attendees were also actively uploading their species observations made during their stay in Bulgaria on iNaturalist in a TDWG2022-dedicated BioBlitz. The challenge concluded with a total of 635 observations and 228 successfully identified species.
Amongst the social activities going on during TDWG 2022 was a BioBlitz, where the conference participants could uploade their observations made in Bulgaria on iNaturalist and help each other successfully identify the specimens.
“Biodiversity provides the support systems for all life on Earth. Yet the natural world is in peril, and we face biodiversity and climate emergencies. The consequences of these include accelerating extinction, increased risk from zoonotic disease, degradation of natural capital, loss of sustainable livelihoods in many of the poorest yet most biodiverse countries of the world, challenges with food security, water scarcity and natural disasters, and the associated challenges of mass migration and social conflicts.
Solutions to these problems can be found in the data associated with natural science collections. DiSSCo is a partnership of the institutions that digitise their collections to harness their potential. By bringing them together in a distributed, interoperable research infrastructure, we are making them physically and digitally open, accessible, and usable for all forms of research and innovation.
At present rates, digitising all of the UK collection – which holds more than 130 million specimens collected from across the globe and is being taken care of by over 90 institutions – is likely to take many decades, but new technologies like machine learning and computer vision are dramatically reducing the time it will take, and we are presently exploring how robotics can be applied to accelerate our work.”
In his turn, Dr Donat Agosti, CEO and Managing director at Plazi – a not-for-profit organisation supporting and promoting the development of persistent and openly accessible digital taxonomic literature – said:
“All the data about biodiversity is in our libraries, that include over 500 million pages, and everyday new publications are being added. No person can read all this, but machines allow us to mine this huge, very rich source of data. We do not know how many species we know, because we cannot analyse with all the scientists in this library, nor can we follow new publications. Thus, we do not have the best possible information to explore and protect our biological environment.”
Dr Donat Agosti demonstrating the importance of publishing biodiversity data in a structured and semantically enhanced format in one of his presentations at TDWG 2022.
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At the closing plenary session, Gail Kampmeier – TDWG Executive member and one of the first zoologists to join TDWG in 1996 – joined via Zoom to walk the conference attendees through the 37-year history of the association, originally named the Taxonomic Databases Working Group, but later transformed to Biodiversity Information Standards, as it expanded its activities to the whole range of biodiversity data.
“While this presentation is about TDWG’s history as an organisation, its focus will be on the heart of TDWG: its people. We would like to show how the organisation has evolved in terms of gender balance, inclusivity actions, and our engagement to promote and enhance diversity at all levels. But more importantly, where do we—as a community—want to go in the future?”,
Then, in the final talk of the session, Deborah Paul took to the stage to present the progress and key achievements by the association from 2022.
🤩Year in review by @idbdeb at #TDWG2022: many wonderful achievements & even more in the works!🙌 E.g.✅Memorandum of Understanding with Genomic Standards Consortium ✅new Mineralogy Task Group ✅new vision & mission statement ✅collaboration with @GBIF on the new data model.. 1/ pic.twitter.com/RZx8hlePOm
Deborah Paul reminds that – apart from the conference abstracts – the TDWG journal: Biodiversity Information Science and Standards (BISS) also welcomes full-lenght articles that demonstrate the development or application of new methods and approaches in biodiversity informatics.
Launched in 2017 on the Pensoft’s publishing platform ARPHA, the journal provides the quite unique and innovative opportunity to have both abstracts and full-length research papers published in a modern, technologically-advanced scholarly journal. In her speech, Deborah Paul reminded that BISS journal welcomes research articles that demonstrate the development or application of new methods and approaches in biodiversity informatics in the form of case studies.
Amongst the achievements of TDWG and its community, a special place was reserved for the Horizon 2020-funded BiCIKL project (abbreviation for Biodiversity Community Integrated Knowledge Library), involving many of the association’s members.
Having started in 2021, the 3-year project, coordinated by Pensoft, brings together 14 partnering institutions from 10 countries, and 15 biodiversity under the common goal to create a centralised place to connect all key biodiversity data by interlinking a total of 15 research infrastructures and their databases.
Deborah Paul also reported on the progress of the Horizon 2020-funded project BiCIKL, which involves many of the TDWG members. BiCIKL’s goal is to create a centralised place to connect all key biodiversity data by interlinking 15 key research infrastructures and their databases.
In fact, following the week-long TDWG 2022 conference in Sofia, a good many of the participants set off straight for another Bulgarian city and another event hosted by Pensoft. The Second General Assembly of BiCIKL took place between 22nd and 24th October in Plovdiv.
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You can also explore highlights and live tweets from TDWG 2022 on Twitter via #TDWG2022.
The Pensoft team at TDWG 2022 were happy to become the hosts of the 37th TDWG conference.
Invasive insects can be vectors of diseases, cause damage to agriculture and forestry, and threaten native biodiversity. Recognising this dramatic impact, the open-access journal Alpine Entomology, published by Pensoft on behalf of the Swiss Entomological Society, opened a dedicated topical collection that is already accepting submissions.
Impacts of alien insects in the Alpine ecosysteminvites scientists working on invasive species and plant-insect interactions in Alpine regions to openly publish their research articles, review articles, and short communications on, among others, trends or changes in biogeography of emblematic species, shifts in current distributions, or niche replacement.
The new article collection will be edited by Oliver Martin of ETH Zürich, subject editor and editorial board member at Alpine Entomology, Stève Breitenmoser, and Dominique Mazzi.
“Recent years have seen a worldwide increase in invasions by alien species, especially plants and insects, mostly due to trade and climate change,” they explain, noting that although numerous studies exist on the topic, few of them focus on the Alpine areas.
“With this collection we hope to generate exciting discussions and exchange within the scientific community interested in this very particular and sensitive ecosystem,” the editors say, inviting authors to submit their manuscripts assessing the possible impacts of invasive insects on mountain areas.
The collection will remain open for submissions for the next two years. In the meantime, the accepted manuscripts will be published on a rolling basis, as soon as they are ready for publication.
Guest blog post by Harry E. Clarke, Independent Researcher
5th instar Swallowtail larvae feeding on Milk-parsley.
Many books on butterflies publish lists of their larval foodplants. However, many of these lists of larval foodplants have been copied from previous lists, which in turn have been copied from previous lists. Consequently, errors have crept in, and many plant names have long been superseded. This can result in duplicates in the list, with the same plant being given two different names. Most plant lists do not include the authority, which can make it difficult or impossible to identify which plant is being referred to. Some of these plants may not be used by butterflies in Europe, but elsewhere in their range. Or the plants may have been used in breeding experiments, but not used by the butterflies in the wild.
Many of these publications providing the larval foodplants of butterflies only provide the binomial name, without specifying the author. This can create problems in knowing which species of plant is being used, as the same plant name has been used in the past by different authors to describe different species. In some cases, distribution can be used to determine the correct species, but plants can often have similar distributions. For example, in the World Checklist of Vascular Plants, there are 40 entries for the plant with the scientific name Centaurea paniculata, which refer to thirteen different accepted species, depending on authors, subspecies, and variety or form.
Not quite so simple: updating the current lists of larval foodplants
With climate change and habitat loss threatening numerous species, the conservation of butterflies (and other animals) is becoming more important. Whilst many factors determine the distribution of butterflies, such as temperature and rainfall, their survival depends solely on the kinds of plants their larvae eat. Accurate lists of larval foodplants are therefore important to find out where to direct limited conservation resources for the best result.
What started out as a straightforward job of updating the existing lists of larval foodplants with currently accepted names turned out to be a far bigger job. Many of the lists are incomplete, and may vary throughout the range of the butterfly. Here, errors have crept in too. Many references provide incomplete, unverifiable information. Many species of butterfly lay their eggs off-host, rather than on the host plant. For example, the Silver-washed Fritillary (Argynnis paphia)oviposits on tree trunks above where Viola species are growing. Consequently, oviposition records need to be treated with caution, depending on the species.
What do butterfly larvae eat, and why does it matter?
Butterfly larvae can be very fussy about which plants they can use. 20% of European butterfly larvae are monophagous, feeding on just one species of plant. 50% are oligophagous, feeding on a few different closely related plants, whilst 30% are polyphagous feeding on plants in many different families. The Holy Blue (Celastrina argiolus) can utilise plants in an astonishing 19 different families.
The oligophagous butterflies can be divided into two groups:
Oligophagous-monophagous (OM) – feeding on one plant species in one region, and another species in another region.
Oligophagous-polyphagous (OP) – feeding on several closely related species of plants throughout their range, usually in the same genus, or a closely related genus.
4th instar Small Tortoiseshell feeding on Common Nettle.
Plant preferences are only known for a few species of butterflies. For example, the English race of the Swallowtail (Papilio machaon) feeds on Milk-parsley (Peucedanum palustre), whereas in the rest of Europe it has been recorded on 62 other plants. The main larval foodplant of the Small Tortoiseshell (Aglais urticae) is Common Nettle(Urtica dioica), although it will occasionally use other plants.
The survivability of larvae on different plants is largely unknown, except in a few cases where the butterfly species has been studied in detail. There are plants that larvae may be able to eat, but that would likely not help them survive to pupation.
Two species are known to switch their larval foodplant during their second year of development. The Scarce Fritillary (Euphydryas maturna),for example, switches from Ash (Fraxinus excelsior) to Guelder-rose (Viburnum opulus). The Northern Grizzled Skipper (Pyrgus centaureae) switches from Dwarf birch (Betula nana) to Cloudberry (Rubus chamaemorus).
The most delicious plants
For the first time, a list of the current accepted plant names utilised by 471 European butterfly larvae is presented, with references. Where possible, errors in previous lists have been removed. The list of larval foodplants doubled compared to previous published lists. This has resulted in a list of 1506 different plant species in 72 different families. 86 plant records are only known at the generic level. Larval foodplants of 25 butterfly species are currently unknown, which are mostly the “Browns” (Satyrinae), which probably feed on grasses (Poaceae), or possibly sedges (Cyperaceae).
Whilst most plant families are utilised by less than six butterfly species, a few plant families are particularly favoured, with grasses (Poaceae) and legumes (Fabaceae) being the most popular. Similarly, most plant species are only utilised by a few butterfly species, but the fine grasses Sheep’s Fescue (Festuca ovina) and Red Fescue (Festuca rubra) are favoured by a large number of butterfly species.
Taxonomic splits create problems. Where cryptic species are allopatric, records can be allocated on the basis of their distribution. But where cryptic species are sympatric, this will require a resurvey to determine the larval foodplants. It cannot be assumed that two cryptic butterfly species use the same plants, as something has to become different for them to evolve into separate species.
Looking forward
Future publications should ensure that old and ambiguous plant names are not used. Plant names should be specified with their full scientific name, as specified by the International Code of Nomenclature for algae, fungi, and plants. The World Checklist of Vascular Plants should be checked to ensure the currently accepted plant name is being used.
Fully documented records are needed of what larval foodplants butterfly larvae are utilising in the wild. To get a better understanding of usage, full details need to be recorded, including date, location, altitude, abundance, and larval stage. Abundance will help in the understanding of preferences. To allow records to be properly verified, evidence should be provided on how the larvae and plants were identified. Regional lists are also important – to help direct conservation efforts to the plants being used locally, rather than elsewhere. This list of larval foodplants is provided as a step towards a fully justified database, which will be updated as and when corrections are found. It highlights those 25 butterfly species whose larval foodplants are currently unknown.
Clarke HE (2022) A provisional checklist of European butterfly larval foodplants. Nota Lepidopterologica 45: 139-167. https://doi.org/10.3897/nl.45.72017
African Invertebrates invites any submissions linked to Jason, new species descriptions, revisions of taxa he has worked on, or any work based on specimens he collected.
From 1976 to 1994, Jason Londt was Assistant Director at the Natal Museum (now KwaZulu-Natal Museum) in South Africa, publisher of the African Invertebratesjournal. Then, he became Director before retiring in 2003.
During his career at the Museum and well after that, Jason described more than 570 species and 46 genera of insects from the Afrotropics. While the majority of his work was on the robber fly family (Asilidae), Jason also worked on hangingflies (Bittacidae) and ticks. He was also a prolific collector of many other insects, still kept in the collection of the KwaZulu-Natal Museum.
Dr Jason Gilbert Hayden Londt
Jason’s fieldwork was extensively targeting the diverse habitats in South Africa: from the subtropical coast of KwaZulu-Natal, the grasslands in the Midlands around Pietermaritzburg – where the museum is based – and further north in the Highveld, to the higher elevations of the Drakensberg Mountains bordering Lesotho, and from the Succulent and Nama Karoo, to the diverse Fynbos habitats along the south-western coast of South Africa. Additional major fieldwork took place in Namibia, Kenya, Malawi, and to a lesser extent: Eswatini (Swaziland) and Cote d’Ivoire. In addition to utilising the collected material for taxonomic work, Jason also used his field trips to publish behavioural observations and prey selection of Asilidae species.
To celebrate Jason’s career achievements and his 80th birthday, African Invertebrates will be publishing a Festschrift in his honour in April 2023. We invite any submissions linked to Jason, new species descriptions, revisions of taxa he has worked on, or any work based on specimens collected by Jason.
