A New Checklist For The Birds Of Calabria: 363 Species At Mediterranean Crossroads

Calabria’s updated bird checklist now lists 363 species, 43 more than in 1993, including Italy’s first documented breeding White-rumped Swift and continued Egyptian Vulture nesting.

Guest blog post by Stazione Ornitologica Calabrese (StOrCal)

Calabria, the toe of the Italian peninsula, lies between the Tyrrhenian and Ionian seas, a short crossing from Sicily and the North African coast. That position has long made it a place where birds from very different regions turn up. Yet its avifauna had not been reviewed in full for more than thirty years.

Our study in Biodiversity Data Journal brings that picture up to date. Drawing on published papers, technical reports, ringing bulletins, museum specimens and validated citizen-science records up to 31 December 2025, we compiled an updated checklist of 363 species and nine subspecies.

That is 43 species more than the previous regional list of 320 (Scebba et al. 1993). None of the older records was dropped, so the additions represent a real gain in regional knowledge.

White-rumped Swift Apus caffer
White-rumped Swift, whose first Italian and central-Mediterranean breeding was documented in Calabria (Pucci et al. 2022). Photo credit: Mario Pucci.

One addition stands out. At an inland site in the province of Crotone, White-rumped Swift (Apus caffer) was found nesting, the first documented breeding of the species in Italy and in the central Mediterranean Basin (Pucci et al. 2022). An African swift breeding this far north suggests Calabria may be a bridgehead for Afro-Iberian species reaching Europe.

Bird ringing
Bird ringing at Punta Alice, where several of the region’s rare vagrants were first detected. Photo credit: Mario Pucci

Most of the other new entries tell a quieter story. Thirty-five of the 43 additions are accidental or vagrant birds, and they point to decades of more systematic fieldwork rather than to genuine range change. Targeted ringing at coastal stations such as Punta Alice (Crotone) and San Michele di Cetraro (Cosenza) has turned up Siberian warblers and flycatchers, among them Pallas’s Leaf Warbler, Dusky Warbler and Red-flanked Bluetail, that would otherwise pass unnoticed. In all, the vagrants recorded in Calabria come from Asia, Africa, northern Europe and even North America, a spread that makes the region a meeting point of separate migration systems.

The checklist also shows what is at stake for conservation. Of the 363 species, 125 are listed in Annex I of the EU Birds Directive, and national Red List categories are available for 230, including nine Critically Endangered.

Egyptian Vulture Neophron percnopterus
Egyptian Vulture, one of the Critically Endangered raptors still breeding in Calabria. Photo credit: Pierpaolo Storino

Most of the Critically Endangered birds depend on wetlands, tied to a small and fragmented network of coastal marshes. Among the region’s emblematic raptors is the Egyptian Vulture (Neophron percnopterus), still breeding in Calabria but represented in Italy by a small population with worrying fluctuations in the number of breeding birds, a reminder of how precarious the country’s cliff-nesting and scavenging raptors remain.

The full dataset is openly available on Zenodo, and the work is coordinated by the Stazione Ornitologica Calabrese (StOrCal), which brings the region’s observers together under shared standards. Much is still missing: the inland massifs of Pollino, Sila and Aspromonte remain under-surveyed, and breeding densities are poorly known for most species. The checklist gives that work a verifiable point to build on.

Original source:

Urso S, Martino G, Muscianese E, Policastrese M, Pucci M, Vena M, Storino P (2026) Updated checklist of the birds of Calabria (southern Italy). Biodiversity Data Journal 14: e195967. https://doi.org/10.3897/BDJ.14.e195967

In Productive Ecosystems, Larger Animals Capture More Energy Per Species – but Human Pressure is Reshaping the Balance

A global analysis of more than 12,000 bird and mammal species reveals that ecosystems do not share energy evenly across body sizes and human activities influence this.

Guest blog post by Luis Camacho & Miguel Araújo

A global analysis of more than 12,000 bird and mammal species reveals that ecosystems do not share energy evenly across body sizes. Small species dominate in numbers, but in high-productivity regions their abundance is spread so thinly across many species that larger animals end up capturing more energy per species. Human activity compounds these patterns by selectively eroding large-bodied diversity.

How does an ecosystem distribute its energy across body sizes? A new study suggests the answer depends on where you are – and how much humans have altered the landscape. Analysing communities of birds and mammals worldwide, researchers show that larger-bodied species can, on average, capture more energy per species than smaller ones, particularly in highly productive environments. The work also reveals that human impacts restructure these patterns by disproportionately removing large-bodied species from local communities.

The research, led by Luis F. Camacho and Miguel B. Araújo is published in Frontiers of Biogeography, the journal of the International Biogeography Society.

Why body size matters for how ecosystems share energy

Workflow diagram to predict the individual density per km2 of mammal and bird species across a one-degree cell grid globally. A. Global density of data points of empirical estimates of species abundance used for model training; B. Example of 80% training and 20% testing blocks used per fold in our modelling framework; C. Global maps showing the sum of predicted abundance per km2 of all species across one-degree cells; D. Global estimations of species body mass-abundance relationships (MAR-SPP), individual mass distributions (IMD) and richness mass distributions (RMD). Credit to Camacho & Araújo, 2026.

Ecologists have long observed that larger species tend to have smaller populations: a bigger body requires more energy to sustain, so fewer individuals can be supported. A slope of −0.75 in the log–log relationship between body mass and abundance has been proposed as a null expectation – the point at which every species, regardless of size, commands an equal share of ecosystem energy. Yet testing this idea globally has been difficult because abundance data are patchy across regions and taxa.

This study tackles that limitation head-on. By combining large global datasets of abundance and distributions of species, the authors model local populations of birds and mammals across the planet and ask: is ecosystem energy concentrated in a few large organisms, or dispersed among many small ones – and how does that change from place to place?

What the team did

Using extensive abundance datasets and species trait information, the authors modelled population densities (individuals per km²) for 12,057 terrestrial bird and mammal species on a global grid at one-degree resolution. This enabled them to reconstruct community structure across environments and to examine three complementary signatures of how body size relates to energy and diversity within communities: the body mass–abundance relationship across species (how abundance declines with body size), the individual mass distribution (how individuals are distributed across body sizes regardless of species identity), and the richness mass distribution (how species richness is distributed across body sizes). They then related these patterns to two major global drivers: ecosystem productivity (net primary productivity) and human pressure (human footprint index).

Key findings

Relationship between species body mass and abundance (dark blue), individual mass distribution (light blue) and species-richness mass distribution (orange) in communities across one-degree cells as a function of global gradients of net primary productivity (NPP) (A, C) and human footprint (B, C). MAR-SPP, IMD and RMD slopes represent the exponent in power law relationships. Panel A shows the NPP effect on MAR-SPP, IMD and RMD values adjusted for human footprint and panel B shows the human-footprint effect adjusted for NPP. In A and B, the graph uses a boxplot format where the white central section represents the interquartile range between 25% and 75%, the central line denotes the median and the shaded areas indicate the whiskers. Outliers are omitted for clarity. The dashed line depicts a reference of slope = -0.75. Boxplots were calculated in intervals of 0.001 for NPP and every unit of human footprint raised to the 1/4 power. Lines were smoothed with a loess regression with a 0.06 span (α). The boxplots were drawn from the mean value per one-degree cell across 10 global datasets. In A and B, thicker lines represent the mean slopes of 10,000 general linear model (GLM) iterations (1000 iterations on 10 data sets), based on random samples of 20 one-degree cells. In C, GLM slopes are shown across the combined effects of NPP and human footprint. GLM slopes (thick lines in A and B and coloured areas in C) appear to depict non-linear relationships because of back-transformation of NPP and human footprint, which were squared-root and fourth-root transformed for GLM. Credit to

1. Productive ecosystems tilt energy capture towards larger species.

As productivity increases, the study finds that small-bodied species become more diverse without a matching rise in total abundance. Individuals are effectively “spread thinner” across more small-bodied species, reducing the average energy share per small-bodied species. Meanwhile, large-bodied species – fewer in number but less diluted by richness – end up capturing more energy on average. The body mass-abundance slope ranged from approximately −0.69 in the least productive environments to −0.35 in the most productive, consistently shallower than the −0.75 null expectation.

2. Human pressure reshapes community organisation, with lasting consequences.

Human activity produces a shift in these relationships that resembles – but is mechanistically distinct from – the productivity effect. Human impact operates primarily by reducing both the abundance and, more strongly, the species richness of large organisms. This likely reflects the well-documented disproportionate extirpation of large-bodied species by human activities, leaving a persistent imprint on how energy and diversity are distributed across body sizes.

3. Energy distribution and ecological opportunity vary independently.

Across the globe, patterns of energy flow across body sizes and the opportunities for diversification (how many species exist at each body size) can decouple. Interestingly, the distribution of species richness across body sizes was more stable across environments than the distribution of energy – yet it had a stronger influence on the body mass–abundance relationship. This helps explain why simple, one-size-fits-all expectations about body size and abundance often fail at large scales.

Why it matters

The authors argue that body mass–abundance–richness relationships can serve as a functional metric of ecological change – capturing not just how many species are present, but how ecosystems allocate individuals and energy across body sizes. This matters for biodiversity assessments because losing large-bodied diversity can reorganise ecosystems in ways that species counts alone cannot reveal. Specifically, these patterns may help improve biodiversity offset strategies and address the risk of underestimating the ecological importance of large-bodied species.

Small-bodied animals still dominate numerically, but in productive ecosystems they are divided among many more species. That dilution changes the per-species share of individuals and, by extension, energy.

Luis F. Camacho, first author

Human pressure does not just remove species; it reshapes the functional organisation of communities. Looking at body size, abundance, and richness together reveals structural changes that standard indicators miss.

Miguel B. Araújo, senior author

Original source:

Camacho LF, Araújo MB (2026) Body mass–abundance relationships reveal uneven global energy distribution across body size classes in vertebrates. Frontiers of Biogeography 19: e164408. https://doi.org/10.21425/fob.19.164408

Two new bird species from the Amazon Basin described based on bioacoustics and morphological data

Two new antbird species discovered in the Amazon Basin and described in the open-access journal Vertebrate Zoology.

Scientists have discovered that a widely recognized Amazonian antbird is not one, but five distinct species – including two completely new to science. This revelation of hidden biodiversity was achieved by integrating artificial intelligence, vocal analysis, and traditional museum work, demonstrating how cutting-edge technology can transform our understanding of life in Earth’s richest ecosystems.

The study was conducted by Vagner Cavarzere and his master’s student Enrico L. Breviglieri from São Paulo State University (UNESP), Brazil, together with curator Luis F. Silveira of the University of São Paulo Museum of Zoology, and was published in the open-access journal Vertebrate Zoology.

The research focused on the Cercomacra cinerascens antbird species complex, a group of small, insect-eating birds widespread across the Amazon Basin. While these birds appear nearly identical in plumage, they produce strikingly different songs.

Birds rely heavily on vocal communication, which are important for species recognition. Their songs act as acoustic signatures, providing a powerful key to unlocking hidden diversity.

the researchers explain

The team named one of the new species (Cercomacra mura) in honor of the Mura people, Indigenous inhabitants of the western Amazon where this bird occurs.

One of the new antbird species, Cercomacra mura perched on a branch.
One of the new antbird species, Cercomacra mura, perched on a branch. Credit to Tomaz Melo.

The second new species takes its name from its most diagnostic trait: a song composed solely of two‑note, raspy phrases. From the Latin raucus (hoarse, raspy) and sonus (sound), the scientific name Cercomacra raucisona directly reflects its unique vocal signature.

One of the new antbird species, Cercomacra raucisona perched on a tree branch
One of the new antbird species, Cercomacra raucisona. Photo credit to: Fernando Zurdo

To decode these signatures, the team employed BirdNET, an artificial intelligence tool developed by the Cornell Lab of Ornithology. This machine-learning algorithm converts sound into numerical data, allowing for the automated comparison of bird recordings collected across the Amazon. The vocal patterns it revealed were then cross-referenced with meticulous analyses of vocalizations, plumage patterns and morphology.

This multidisciplinary approach confirmed that populations separated by major Amazonian rivers, such as the Amazonas, Ucayali, Madeira, and Tapajós, have evolved into distinct species. “These rivers function as long-term natural barriers”, says lead author Cavarzere.

Populations diverged independently over millennia into the unique species we describe today, which are kept isolated by these major rivers.

the researchers explain

The discovery underscores the vast amount of cryptic biodiversity still awaiting discovery in the Amazon, even among seemingly well-known birds. It also highlights a new paradigm for taxonomy, where AI-powered tools work in concert with traditional bioacoustics and specimen-based research.

By merging artificial intelligence with the foundational science of bioacoustics and museum collections, we can uncover diversity that would otherwise remain invisible. Recognizing these species is the first and most critical step toward ensuring their protection in a rapidly changing world.

the researchers conclude

Original study:

Cavarzere V, Breviglieri EL, Silveira LF (2026) Integrative taxonomy of the Cercomacra cinerascens species complex with description of two new species (Aves: Thamnophilidae). Vertebrate Zoology 76: 73-91. https://doi.org/10.3897/vz.76.e171834

Eyes to the skies: assessing the threat status of Vietnam’s bird species

A new study published in the open-access journal Nature Conservation assesses the threat status of bird species from Vietnam, underscoring the country’s critical conservation needs.

Vietnam is well known for its extraordinary level of biodiversity, particularly its very rich bird fauna. However, although the country is home to more than 900 species, co-author of the study Dr. Hung Le Manh stresses that no efforts had been made to assess their conservation status to better protect them from extinction risks.

eagle on a tree.
Lesser fish eagle in Vietnam. Credit: Dr. Hung Le.

For this reason, the study provides a comprehensive list of bird species reported from Vietnam. It incorporates threat statuses, identifying avian richness hotspots and their coverage by the national protected area network. The implementation of the IUCN’s “One Plan Approach to Conservation” is also examined.

Of the 803 native bird species in Vietnam, only 43 are currently listed as threatened in the IUCN Red List. Internationally, an additional 87 species are listed in the Appendices of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES).

Prof. Dr. Truong Quang Nguyen highlights that 61 species are listed in the 2007 version of Vietnam Red Data Book, 112 species in the 2024 version, and 138 species are included under national decrees.

Two birds on a branch.
Streaked barwings in Vietnam. Credit: Dr. Hung Le.

Ass. Prof. Dr. Dennis Rödder from the Leibniz-Institute for the Analysis of Biodiversity Change (LIB) stresses that highest bird species richness was found in northern and central Vietnam. The Mekong Delta is an important area for non-breeding species, but it had comparatively low protected area coverage.

Zoo databases show that 308 species are represented in zoo holdings, including 20 threatened and two threatened and endemic species. One of these species, the Vietnam pheasant, listed as Critically Endangered on the IUCN Red List, has not been reported from the wild in Vietnam since 2000. It is one of the flagship species of the current VIETNAMAZING conservation campaign and network, and is set to be released back into the wild to restock the natural populations.

Vietnam pheasant at Hanoi Zoo. Credit: Thomas Ziegler.

The team led by Prof. Dr. Thomas Ziegler, Cologne Zoo and the Institute of Zoology at the University of Cologne, has contributed to identifying gaps in conservation of Vietnamese vertebrates. Three papers written by the team have already been published in Nature Conservation: amphibians (2022), reptiles (2023), and mammals (2024). These threat analyses are intended to accelerate effective conservation measures by implementing IUCN’s “One Plan Approach” and the “Reverse the Red” initiative.

“This updated avifaunal assessment underscores Vietnam’s critical conservation needs, highlighting areas for improved protection, integration of expanded ex situ conservation efforts, and alignment of legislation with global conservation priorities,” says Ass. Prof. Dr. Minh D. Le from Central Institute for Natural Resources and Environmental Studies (CRES), Vietnam National University, Hanoi, Vietnam.

Original source

Ginal P, Hackenbroch H, Le Manh H, Nguyen TQ, Le MD, Rödder D, Ziegler T (2025) Assessment of the threat status of bird species from Vietnam – Implementation of the One Plan Approach to conservation. Nature Conservation 60: 49-72. https://doi.org/10.3897/natureconservation.60.162832

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From Texas to Tennessee: Burrowing owl makes odd migration

A burrowing owl is overwintering on a Tennessee River peninsula near New Johnsonville, Tennessee, marking the first sighting of the species in the state.

STARKVILLE, Miss.—Birds migrating from north to south are a given but migrating from the southwest to the southeast is a little rarer. A burrowing owl is overwintering on a Tennessee River peninsula near New Johnsonville, Tennessee, marking the first sighting of the species in the state, and a Mississippi State wildlife ecologist is researching the fascinating oddity.

As the burrowing owl made its first home on a former Tennessee Valley Authority fossil fuel plant in 2020, Scott Rush, a scientist in the MSU Forest and Wildlife Research Center, was called in by TVA to study the bird of prey found hundreds of miles outside of its range.

“Burrowing owls are found west of Central Texas and Oklahoma, all the way up into Canada. There is also a non-migratory population in Florida, so you’ll occasionally see them in Alabama but never in Tennessee,” Rush said, explaining a continuing struggle for the birds is a loss of habitat.

Burrowing Owl, Athene cunicularia, observed overwintering in New Johnsonville, Tennessee, USA. Photograph taken on 19 November 2022 by T. Ross.

“They live inside burrows created by prairie dogs and other animals,” he said. “They’re declining across the range in part because we’re losing some of those historic systems like undisturbed prairie dog colonies as more grasslands are being developed.”

Rush, an associate professor in MSU’s Department of Wildlife, Fisheries and Aquaculture, and his research team have studied the bird and its diet to learn more about where the novel creature came from and why he makes his winter home in the Volunteer State.

Burrowing owl on the former TVA fossil fuel plant near New Johnsonville, Tennessee. Photo via MSU

The team collected plumage from the owl’s feathers and determined it was a male belonging to the subspecies A.c. hypugaea. They studied pellets to determine its diet, identifying six different species including insect, mammalian and plant remnants. They also conducted an isotopic analysis of its feathers to determine the bird’s home range. Details from the sightings were recently published in Check List, a journal of biodiversity data.

“We could see from various kinds of elemental components that the bird is probably from Texas, relatively near Dallas, according to our analysis,” said Rush, who noted the bird has been banded and this year, scientists hope to outfit it with a GPS tracker. “If we can put a GPS tracker on the owl, we can confirm its home range.”

The owl, which again has overwintered this season in the same location, was first spotted by a TVA employee, and Liz Hamrick, a terrestrial zoologist with TVA reached out to Rush.

A burrowing owl. Photo by Moisés Silva Lima shared under a CC BY 2.0 license

“A security guard at the site who happened to be an amateur birder came across it. Once I was alerted of its presence, I connected with our natural resources team who had already been working with Dr. Rush studying ospreys and vultures,” Hamrick said. “My role is to review TVA’s actions and ensure potential impacts to common wildlife and rare animals are avoided or minimized, and that includes protecting this owl. We need to make sure we follow all the state and federal laws, including the Endangered Species Act and the Executive Order for Migratory Birds.”

Hamrick said that as species assemblages change geographies, her team must be vigilant in identifying new species moving to the area like the burrowing owl and doing their best to protect them on TVA sites.

“It’s been exciting to learn about a whole new species and try to solve a mystery of why on earth this bird is repeatedly selecting to come to this industrial site out of its normal range,” she said.

Research article:

Rush SA, Naveda-Rodríguez A, Hamrick EB (2023) New overwintering location of Burrowing Owl, Athene cunicularia hypugaea (Molina, 1782) (Strigidae) in Tennessee, USA, with diet assessed through pellets. Check List 19(6): 863-868. https://doi.org/10.15560/19.6.863

This news piece was originally published by Mississippi State University. It is republished here with permission.

Biodiversity in a bird’s nest: DNA as a tool for bird conservation

Researchers employ eDNA to investigate ‘fascinating microcosms’ inside birds’ nests.

Researchers have found that advanced DNA technologies can get a detailed snapshot of insect diversity within a bird’s nest, showing everything from the bird’s last meal to disease-causing parasites.

A bird’s nest. Photo by Farrini

“Birds’ nests are fascinating microcosms, but until now, studies have only examined the living insects that can be seen crawling and flying around the nests,” says Valerie Levesque-Beaudin, lead author on the study and a leading expert in Diptera taxonomy at the Centre for Biodiversity Genomics (CBG) at the University of Guelph (U of G).

With newer DNA-based methods, researchers can pick up traces of environmental DNA to get a snapshot of all the species in these tiny ecosystems. “The analysis of nest contents and environmental DNA, or ‘eDNA’ as it’s called, via metabarcoding helps us to gain more insight into a bird’s diet, parasites, and other factors that could impact a bird’s health and breeding success,” says Levesque-Beaudin.

For the study, published in Metabarcoding and Metagenomics, researchers collected 20 birds’ nests from the 162-hectare Arboretum at U of G. They examined the nests using DNA barcoding to identify insects to species and DNA metabarcoding to look at the entire nest ecosystem.

Organisms leave traces of DNA behind as they move through the environment, and researchers can use metabarcoding to build a comprehensive picture of life in the nest. Metabarcoding pulls all DNA traces in a bulk sample – in this case, parts of dead insects, debris, and dust from birds’ nests. This method differs from DNA barcoding, where a single specimen – an insect in this case – is DNA sequenced to identify it to species level.

The CBG team used emergence traps for a first sweep of the nest’s contents followed by a second, deeper probe using DNA metabarcoding to identify all the species encountered in the nest. Researchers passed the nests through a sieve, collecting insect remains and the dust for DNA extraction. “We not only found insects making a living in the nest, but traces of prey, parasites, and many other things,” says Levesque-Beaudin. “The most unexpected was the amount of information gained on other birds’ species whose feathers were either used for nest building or whose nests were essentially overbuilt by the nesting species.”

A tent-like emergence trap is used to contain and collect insects living inside the nest debris. PHOTO: VALERIE LEVESQUE-BEAUDIN

“This approach has the potential to revolutionize how we study bird nests as a micro-ecosystem. It unravels connections between different ecological guilds within the nest and connections of the birds with their environment, which would otherwise remain hidden,” says Dr. Bettina Thalinger, senior author of the study.

The CBG’s Associate Director of Analytics, Dr. Dirk Steinke, says the study has positive implications for bird conservation efforts. He says his students have already begun looking at American Kestrels, a threatened bird of prey, to find out if there are clues in the nest communities via metabarcoding and if DNA can help scientists determine if lack of prey or increased parasitism could be among the causes of nestling mortalities.

Darwin’s finch, also called Galápagos finch. PHOTO BY CHRIS HO, CENTRE FOR BIODIVERSITY GENOMICS.

Galapagos finches are another species threatened by the avian vampire fly – a parasite that attacks nestlings – and treatments include pesticides. Steinke notes that one of his graduate students has begun using DNA metabarcoding in the finches’ nests to understand better the potential impact of pesticide treatment on the entire arthropod nest community.

Research article:

Levesque-Beaudin V, Steinke D, Böcker M, Thalinger B (2023) Unravelling bird nest arthropod community structure using metabarcoding. Metabarcoding and Metagenomics 7: e103279. https://doi.org/10.3897/mbmg.7.103279

News piece originally published by the Centre of Biodiversity Genomics. Republished with permission.

Unraveling nature’s chorus: AI detects bird sounds in Taiwan’s montane forests

Researchers developed an AI tool which identifies 169 species native to Taiwan from the sound of their calls.

Spectacular subtropical montane forest scenery in Yushan National Park. Credit: Ms. Wen-Ling Tsai

Montane forests, known as biodiversity hotspots, are among the ecosystems facing threats from climate change. To comprehend potential impacts of climate change on birds in these forests, researchers set up automatic recorders in Yushan National Park, Taiwan, and developed an AI tool for species identification using bird sounds. Their goal is to analyze status and trends in animal activity through acoustic data.

Prof. Hsueh-Wen Chang and Ph.D. Candidate Shih-Hung Wu from National Sun Yat-Sen University, Taiwan, Dr. Ruey-Shing Lin, Assistant Researcher Jerome Chie-Jen Ko from the Endemic Species Research Institute, and Ms. Wen-Ling Tsai from Yushan National Park Headquarters have published a paper in the open access journal Biodiversity Data Journal, detailing their use of AI to detect 6 million bird songs.

Compared to traditional observation-based methods, passive acoustic monitoring using automatic recorders to capture wildlife sounds provides cost-effective, long-term, and systematic alternative for long-term biodiversity monitoring. 

The authors deployed six recorders in Yushan National Park, Taiwan, a subtropical montane forest habitat with elevations ranging from 1,200 to 2,800 meters. From 2020 to 2021, they recorded nearly 30,000 hours of audio files with abundant biological information.

An automatic recorder was installed on a tree to capture the surrounding soundscape. Credit: Ph.D. Candidate Shih-Hung Wu

However, analyzing this vast dataset is challenging and requires more than human effort alone.

To tackle this challenge, the authors utilized deep learning technology to develop an AI tool called SILIC that can identify species by sound. 

SILIC can quickly pinpoint the precise timing of each animal call within the audio files. After several optimizations, the tool is now capable of recognizing 169 species of wildlife native to Taiwan, including 137 bird species, as well as frogs, mammals, and reptiles.

In this study, authors used SILIC to extract 6,243,820 vocalizations from seven montane forest bird species with a high precision of 95%, creating the first open-access AI-analyzed species occurrence dataset available on the Global Biodiversity Information Facility. This is the first open-access dataset with species occurrence data extracted from sounds in soundscape recordings by artificial intelligence.

The Gray-chinned Minivet (left) displays a secondary non-breeding season peak (right) which is possibly related to flocking behavior. Credit: Shih-Hung Wu, Ph.D. Candidate

The dataset unveils detailed acoustic activity patterns of wildlife across both short and long temporal scales. For instance, in diel patterns, the authors identify a morning vocalization peak for all species. On an annual basis, most species exhibit a single breeding season peak; however, some, like the Gray-chinned Minivet, display a secondary non-breeding season peak, possibly related to flocking behavior.

As the monitoring projects continue, the acoustic data may help to understand changes and trends in animal behavior and population across years in a cost-effective and automated manner.

The sound of Gray-chinned Minivet. Credit: Ph.D. Candidate Shih-Hung Wu

The authors anticipate that this extensive wildlife vocalization dataset will not be valuable only for the National Park’s headquarters in decision-making.

“We expect our dataset will be able to help fill the data gaps of fine-scale avian temporal activity patterns in montane forests and contribute to studies concerning the impacts of climate change on montane forest ecosystems,”

they say.

Original source:

Wu S-H, Ko JC-J, Lin R-S, Tsai W-L, Chang H-W (2023) An acoustic detection dataset of birds (Aves) in montane forests using a deep learning approach. Biodiversity Data Journal 11: e97811. https://doi.org/10.3897/BDJ.11.e97811

You can also follow Biodiversity Data Journal on Twitter and Facebook.

Seeing off 2022 with another selection of awesome new species

A list of the most exciting biodiversity wins we’ve published in the second half of 2022.

Another year rolled by and we at Pensoft have a lot to celebrate! This year, we marked our 30th birthday, and what a ride it’s been! We thank all of you for sticking around and helping us put biodiversity science in the spotlight where it deserves to be.

The holiday season is always great fun, but for us, every biodiversity or conservation win is reason enough to celebrate. And we’ve had so many this year! We already showed you our top species for the first half of 2022. Here’s an update for the second half with the most exciting new species that we’ve published across our journals:

The elusive owl from a remote island

The Principe scops-owl (Otus bikegila) was discovered on the small island of Príncipe, just off Africa’s western coast. Its existence had been suspected since 1998, but locals said its presence on the island could be traced back to 1928.

The bird is endemic to the island of Príncipe. Furthermore, the research team behind its discovery noted that it can be found only in the remaining old-growth native forest on the island, in an area that largely remains uninhabited.

Otus is the generic name given to a group of small owls sharing a common history, commonly called scops-owls. They are found across Eurasia and Africa, and include such widespread species as the Eurasian scops-owl (Otus scops) and the African scops-owl (Otus senegalensis).

The species epithet “bikegila”, in turn, was chosen in homage of Ceciliano do Bom Jesus, nicknamed Bikegila – a former parrot harvester from Príncipe Island and now a park ranger on the island.The new species quickly became insanely popular, generating memes (a true sign of its popularity!). One website even described it as “a flying meme-generator that sounds like a newborn puppy.”

Published in ZooKeys.

The underground carnivore

Nepenthes pudica is a carnivorous plant that grows prey-trapping contraptions underground, feeding off subterranean creatures such as worms, larvae and beetles.

It belongs to pitcher plants – a group of carnivorous plants with modified leaves (called pitfall traps or pitchers) that help them catch their prey.

Pitcher plants usually produce pitfall traps above ground at the surface of the soil or on trees. N. pudica is the first pitcher plant known to catch its prey underground.

At first, the researchers thought the deformed pitcher protruding from the soil that they saw had accidentally been buried. Only later, when they found additional pitcherless plants, did they consider the possibility that the pitchers might be buried in the soil.

Then, as one of the researchers was taking photos, he tore some moss off the base of a tree and found a handful of pitchers.

The unique plant, however, could already be under threat. As it only lives in one small area of Indonesia, scientists believe it should be classed as Critically Endangered.

Published in PhytoKeys.

The graveyard-dwelling snake

In November 2021, biologist Alejandro Arteaga and his colleagues were traveling through the cloud forests of Ecuador looking for toads, when a local woman told them she had seen odd snakes slithering around a graveyard. Based on her description, the team suspected they might be ground snakes from the genus Atractus, which had never been scientifically recorded in that area of Ecuador.

Indeed, they were able to discover three new snake species living beneath graves and churches in remote towns in the Andes mountains.

The “small, cylindrical, and rather archaic-looking” snakes all belong to a group called ground snakes. In general, not a lot of people are familiar with ground snakes, as they usually remain hidden underground.

All three snakes were named in honor of institutions or people supporting the exploration and conservation of remote cloud forests in the tropics. Atractus zgap, pictured here,  was named in honor of the Zoological Society for the Conservation of Species and Populations (ZGAP), a program seeking to conserve unknown but highly endangered species and their natural habitats throughout the world. 

However, the majority of the native habitat of these new snakes has already been destroyed. As a result of the retreating forest line, the ground snakes find themselves in the need to take refuge in spaces used by humans (both dead and alive), where they usually end up being killed on sight.

Published in ZooKeys.

The beautiful aquarium fish

2022 was a good year for fish diversity! In the first half, we had Cirrhilabrus finifenmaa, in the second half we have Astronotus mikoljii.

Unlike some other participants in this list, this one took a while before it was confirmed as a new species: “We did not discover that it was a new species overnight,” says Oscar Lasso-Alcalá, one of the people behind its discovery.

A. mikoljii is a new species for science, but it is not a “new species” for people who already knew it locally under the name of Pavona, Vieja, or Cupaneca in Venezuela or Pavo Real, Carabazú, Mojarra and Mojarra Negra in Colombia. Nor for the aquarium trade, where it is highly appreciated and has been known by the common name of Oscar.

Moreover, the species has been of great food importance for thousands of years for at least nine indigenous ethnic groups, and for more than 500 years to the hundreds of human communities of locals who inhabit the Orinoco River basin in Venezuela and Colombia. In the plains of Orinoco, it is considered a delicacy “due to its pleasant taste and enhanced texture”.

Oscar Lasso-Alcalá has a special relationship with this fish. “It is more than just a fish in an aquarium since it is considered a true pet,” he says.

Published in ZooKeys.

The spiny-tailed gecko

gecko

Recently, Javier Lobon-Rovira, one of the people behind the discovery of this new gecko, told us what it was like to find this exciting new species: “That night we were tired, so we decided to have a short walk around the camp. And… there it was…! Like a ghost, this small, cryptic, and elusive gecko started  showing up in every big rock boulder.”

Kolekanos spinicaudus is part of Kolekanos, a unique and iconic gecko genus that is only known from southwestern Angola.

Until this discovery, Kolekanos only had one species in the genus, known only from ~200km south of the new discovery, but that species had feathers on its tail, not spines like K. spinicaudus. Immediately, the researchers knew they were dealing with a Kolekanos… but they were astonished to see the spines.

The scientific name “spinicaudus” refers to the unique appearance of the tail of this new species.

K. spinicaudus’s home in southern Angola remains poorly explored, even as it has been considered as an important source of diversification and endemism in West Africa.

Published in ZooKeys.

Honorable mention: the bee with a dog-like snout

“Insects in general are so diverse and so important, yet we don’t have scientific descriptions or names for so many of them,” says Dr Kit Prendergast, from the Curtin School of Molecular and Life Sciences.

The new bee species she discovered, Leioproctus zephyr is excellent proof that we still have a lot to learn about bee biodiversity.

The story behind  L. zephyr’s name is quite interesting – it was named after Zephyr the Maremma dog, Dr Prendergast’s fellow companion. The researcher says Zephyr played an important role in providing emotional support during her PhD. The name also references the dog-like “snout” in the bee’s anatomy that she found rather unusual.

The bee species  was in fact first collected in 1979, but it had to wait until 2022 to be officially described.

However, Dr Prendergast says its future remains uncertain, as it is highly specialised, and has a very restricted, fragmented distribution.

“The Leioproctus zephyr has a highly restricted distribution, only occurring in seven locations across the southwest WA to date, and have not been collected from their original location. They were entirely absent from residential gardens and only present at five urban bushland remnants that I surveyed, where they foraged on two plant species of Jacksonia.”

Published in Journal of Hymenoptera Research.

Honorable mention: Two scorpion species described by high-school citizen scientists

In 2019, California teenagers Harper Forbes and Prakrit Jain were looking at entries on the naturalist social network iNaturalist, when they noticed a mysterious scorpion that a citizen scientist had encountered near a lake in the Mojave Desert. The species had remained unidentified since it was uploaded six years earlier.

The entry that they were looking at was a yet undescribed scorpion species whose name they would add to the fauna of California. Shortly after, they found another entry on iNaturalist that also appeared to be an unknown scorpion species.

The new species, Paruroctonus soda and Paruroctonus conclusus, are playa scorpions, meaning they can only be found around dry lake beds, or playas, from the deserts of Central and Southern California.

The budding naturalists published a formal description of the two species with the help of Lauren Esposito, PhD,  Curator of Arachnology at the California Academy of Sciences.

“These kids can find anything,” Dr Esposito told The Guardian. “You set them out in a landscape and they’re like: ‘Here’s every species of snake, here’s every scorpion, every butterfly,’ and it’s kind of incredible.”

Forbes and Jain were still in high school when they made their groundbreaking discoveries. Now they are in college: Forbes at the University of Arizona studying evolutionary biology and Jain at the University of California, Berkeley, for integrative biology.

Published in ZooKeys.

New species of owl discovered in the rainforests of Príncipe Island, Central Africa 

The Principe Scops-Owl, the eighth known bird species endemic to the island, has a unique call and lives in a restricted range in the Príncipe Obô Natural Park.

A new species of owl has just been described from Príncipe Island, part of the Democratic Republic of São Tomé and Príncipe in Central Africa. Scientists were first able to confirm its presence in 2016, although suspicions of its occurrence gained traction from 1998, and testimonies from local people suggesting its existence could be traced back as far as 1928. 

Otus bikegila. Photo by Martim Melo

The new owl species was described in the open-access journal ZooKeys based on multiple lines of evidence such as morphology, plumage colour and pattern, vocalisations, and genetics. Data was gathered and processed by an international team led by Martim Melo (CIBIO and Natural History and Science Museum of the University of Porto), Bárbara Freitas (CIBIO and the Spanish National Museum of Natural Sciences) and Angelica Crottini (CIBIO).

Bárbara Freitas, Bikegila and Martim Melo pose with an owl. Photo by Martim Melo

The bird is now officially known as the Principe Scops-Owl, or Otus bikegila.

“Otus” is the generic name given to a group of small owls sharing a common history, commonly called scops-owls. They are found across Eurasia and Africa and include such widespread species as the Eurasian Scops-Owl (Otus scops) and the African Scops-Owl (Otus senegalensis). 

Bikegila. Photo by Martim Melo

The scientists behind the discovery further explain that the species epithet “bikegila” was chosen in homage of Ceciliano do Bom Jesus, nicknamed Bikegila – a former parrot harvester from Príncipe Island and now a ranger of its natural park. 

“The discovery of the Principe Scops-Owl was only possible thanks to the local knowledge shared by Bikegila and by his unflinching efforts to solve this long-time mystery,” the researchers say. “As such, the name is also meant as an acknowledgment to all locally-based field assistants who are crucial in advancing the knowledge on the biodiversity of the world.”

Martim Melo and Bikegila. Photo by Alexandre Vaz

In the wild, the easiest way to recognise one would be its unique call – in fact, it was one of the main clues leading to its discovery. 

“Otus bikegila‘s unique call is a short “tuu” note repeated at a fast rate of about one note per second, reminiscent of insect calls. It is often emitted in duets, almost as soon as the night has fallen,” Martim Melo explains.

Otus bikegila’s call. Recording by Martim Melo

The entire Principe Island was extensively surveyed to determine the distribution and population size of the new species. Results, published in the journal Bird Conservation International, show that the Principe Scops-Owl is found only in the remaining old-growth native forest of Príncipe in the uninhabited southern part of the island. There, it occupies an area of about 15 km2, apparently due to a preference for lower elevations. In this small area (about four times the size of Central Park), the densities of the owl are relatively high, with the population estimated at around 1000-1500 individuals.

The difficult terrain of the uninhabited southern forests of Príncipe Island, home to the Príncipe Scops-Owl, was somewhat immortalised by José Correia, Portuguese collector for the American Museum of Natural History, when collecting there in 1928. He wrote in his diary: “I have been in very bad fields ready, but this is bad among the bad or worse among the worse”. Photo by Alexandre Vaz

Nevertheless, because all individuals of the species occur in this single and very small location (of which a part will be affected in the near future by the construction of a small hydro-electric dam), researchers have proposed that the species should be classified as ‘Critically Endangered’, the highest threat level on the IUCN Red List. This recommendation must still be evaluated by the International Union for Conservation of Nature.

Otus Bikegila. Photo by Martim Melo

Monitoring the population will be essential to get more precise estimates of its size and follow its trends. For this purpose, a survey protocol relying on the deployment of automatic recording units and AI to retrieve the data from these has been designed and successfully tested.

“The discovery of a new species that is immediately evaluated as highly threatened illustrates well the current biodiversity predicament”, the researchers say. “On a positive note, the area of occurrence of the Principe Scops-Owl is fully included within the Príncipe Obô Natural Park, which will hopefully help secure its protection.”

A view of the owl’s habitat. Photo by Martim Melo

This is the eighth known species of bird endemic to Príncipe, further highlighting the unusually high level of bird endemism for this island of only 139 km2.

Otus Bikegila. Photo by Paul van Giersbergen

Even though a new species of scops-owl was just described from Príncipe, genetic data indicated that the island was, surprisingly, likely the first in the Gulf of Guinea to be colonised by a species of scops-owl.

“Although it may seem odd for a bird species to remain undiscovered for science for so long on such a small island, this is by no means an isolated case when it comes to owls,” the researchers state. “For example, the Anjouan Scops-Owl was rediscovered in 1992, 106 years after its last observation, on Anjouan Island (also known as Ndzuani) in the Comoro Archipelago, and the Flores Scops-Owl was rediscovered in 1994, 98 years after the previous report.”

 “The discovery of a new bird species is always an occasion to celebrate and an opportunity to reach out to the general public on the subject of biodiversity,” says Martim Melo. “In this age of human-driven extinction, a major global effort should be undertaken to document what may soon not be anymore,” he and his team state in their paper.

Otus bikegila. Photo by Philippe Verbelen

“Birds are likely the best studied animal group. As such, the discovery of a new bird species in the 21st century underscores both the actuality of field-based explorations aiming at describing biodiversity, and how such curiosity-driven endeavour is more likely to succeed when coupled with local ecological knowledge, the participation of keen amateur naturalists, and persistence,” they add.

They believe that this “new wave of exploration, carried out by professionals and amateurs alike”, will help rekindle the link to the natural world, which will be essential to help revert the global biodiversity crisis.

Research article:

Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635

Learning more about bird diversity: What a museum collection in Romania can tell us

“Due to its historical background and the presence of rare species, it is considered to be one of the most important ornithological collections in Eastern Europe,” researcher Gergely Osváth says

Containing specimens from different locations, sometimes spanning across centuries, museum collections can teach us a lot about how some animals are built and how we can protect them. Properly labeled, preserved specimens can show us how the environment and species distribution has changed over extended time periods. Because in many cases these collections remain largely unexplored, a revision can reveal “treasures” that were hidden in plain sight for decades.

The bird skin collection of the Zoological Museum of Babeș Bolyai University, Cluj-Napoca, Romania. Photos by Gergely Osváth and Zsolt Kovács

A team of ornithologists and scientists from the Zoological Museum of Babeș-Bolyai University, Milvus Group – Bird and Nature Protection Association and the Romanian Ornithological Society, headed by Gergely Osváth, set out to revise the ornithological collection in the Zoological Museum of Babeș-Bolyai University, Cluj-Napoca, Romania, checking the species identification of the bird skin specimens to provide an updated catalogue. 

“The collection is unique in the region in many ways: it covers a long time span, it contains a variety of species, belonging to different families and orders, and it is composed of the work of several naturalists and employees of the museum”, Osváth says. “Due to its historical background and the presence of rare species, it is considered to be one of the most important ornithological collections in Eastern Europe.”

First, the researchers examined each bird skin and the data cards documenting the identification, locality, date, sex and catalogue number. Afterwards, they checked the species identification of specimens, determining the sex and age of birds where possible. They also updated the scientific names and taxonomy of birds. In addition, they provide a map representation with new distribution data for bird species, offering valuable information on the status of the avifauna of the Carpathian basin in the 19th and 20th centuries.

Published in the open-access journal ZooKeys, this is the first time that all those specimen data are made public.

The collection includes 925 specimens, belonging to 193 species, that were collected between 1859 and 2021. Perching birds (Passeriformes) were the best represented bird order, with 487 specimens, and 93.6 % of the specimens with known data were collected from Transylvania.

By far, the most interesting specimens were the rare ones, such as specimens of Cinereous Vulture (Aegypius monachus), Eastern Imperial Eagle (Aquila heliaca), Lesser Kestrel (Falco naumanni), all collected between 1903 and 1907 from Transylvania.

With updated information on the taxonomy and morphology of birds in Transylvania, the researchers hope this new catalogue can serve as a basis for valuable ornithological studies.

Research article:

Osváth G, Papp E, Benkő Z, Kovács Z (2022) The ornithological collection of the Zoological Museum of Babeș-Bolyai University, Cluj-Napoca, Romania – Part 1: the catalogue of bird skin specimens. ZooKeys 1102: 83-106. https://doi.org/10.3897/zookeys.1102.79102