preservation

Wildlife on the highway to hell: Roadkill in the largest wetland, Pantanal region, Brazil

*Adult individual of Erythrolamprus aesculapii captured in roadside habitats of BR-262. Photo by Michel Passos*

Scientists provide crucial data to prompt further conservation and safety measures at the notorious BR-262 highway

Having systematically monitored wild animals killed on the Brazilian federal highway BR-262, which passes through the Pantanal region, a research team from the Federal University of Mato Grosso do Sul, Brazil, published their data concerning birds and reptiles in the open access journal Check List.

Apart from information crucial for future conservation activities, the paper provides new and unexpected roadkill records, including the Black-and-white hawk-eagle.

Authored by Wagner Fischer and his colleagues Raquel Faria de Godoi and Antonio Conceição Paranhos Filho, the article is part of the first dataset of vertebrate mortality in the region. A separate paper of theirs is planned to present the data concerning mammals gathered during the same survey, which took place between 1996 and 2000.

*An adult individual of Xenodon matogrossensis captured in roadside habitats of BR-262. Photo by Cyntia Santos.*

Having mapped bird and reptile roadkill on the highway between the cities of Campo Grande and Corumbá in the Brazilian savannah, the team reports a total of 930 animals representing 29 reptile and 47 bird species. In addition, the data provide the first regional geographic record of the colubrid snake Hydrodynastes bicinctus.

The researchers conclude that the species richness observed in the road-killed animals clearly confirms earlier concerns about wildlife-vehicle collisions in the Pantanal region. Such accidents lead to long-term and chronic impact on both wildlife and road safety.

“Mitigation of wildlife-vehicle collisions on this road continues to claim urgency for biodiversity conservation and for human and animal safety and care,” say the authors.

“For managers, the main goal should be to determine target species of greatest concern, focusing on those vulnerable to local extinction or those which represent major risks of serious accidents.”

In the past, the team’s dataset had already been used as a guide to road fauna management. In particular, it was used by government road managers when planning animal overpassess and underpassess equipped with roadside fences as part of the long-term project Programa Estrada Viva: BR-262. So far, however, only some of the less efficient safety methods, such as road signs and lowered speed limits, have been applied at the most critical points.

Over the past several years, a few independent studies have been conducted to monitor roadkill in a similar manner. Two of them (2010 and 2017) looked into mammal-vehicle collisions, while the third recorded reptiles and birds as well. All of them serve to demonstrate that BR-262 continues to be a major cause for the regional wildlife mortality, which in turn increases the risks of serious accidents.

“BR-262 keeps its inglorious fame as a highway to hell for human and wild lives,” points out lead author Wagner Fischer.

*Roadkill on the BR-262 highway, Pantanal region, Brazil. Photos by Ricardo Fraga and Wagner Fischer.*

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Original source:

Fischer W, Godoi RF, Filho ACP (2018) Roadkill records of reptiles and birds in Cerrado and Pantanal landscapes. Check List 14(5): 845-876. https://doi.org/10.15560/14.5.845

Artificial neural networks could power up curation of natural history collections

Deep learning techniques manage to differentiate between similar plant families with up to 99 percent accuracy, Smithsonian researchers reveal

Millions, if not billions, of specimens reside in the world’s natural history collections, but most of these have not been carefully studied, or even looked at, in decades. While containing critical data for many scientific endeavors, most objects are quietly sitting in their own little cabinets of curiosity.

Thus, mass digitization of natural history collections has become a major goal at museums around the world. Having brought together numerous biologists, curators, volunteers and citizens scientists, such initiatives have already generated large datasets from these collections and provided unprecedented insight.

Now, a study, recently published in the open access Biodiversity Data Journal, suggests that the latest advances in both digitization and machine learning might together be able to assist museum curators in their efforts to care for and learn from this incredible global resource.

A team of researchers from the Smithsonian Department of Botany, Data Science Lab, and Digitization Program Office recently collaborated with NVIDIA to carry out a pilot project using deep learning approaches to dig into digitized herbarium specimens.

*Smithsonian researchers classifying digitized herbarium sheets.*

Their study is among the first to describe the use of deep learning methods to enhance our understanding of digitized collection samples. It is also the first to demonstrate that a deep convolutional neural network–a computing system modelled after the neuron activity in animal brains that can basically learn on its own–can effectively differentiate between similar plants with an amazing accuracy of nearly 100%.

In the paper, the scientists describe two different neural networks that they trained to perform tasks on the digitized portion (currently 1.2 million specimens) of the United States National Herbarium.

The team first trained a net to automatically recognize herbarium sheets that had been stained with mercury crystals, since mercury was commonly used by some early collectors to protect the plant collections from insect damage. The second net was trained to discriminate between two families of plants that share a strikingly similar superficial appearance.

*Sample herbarium specimen image of stained clubmoss.*

The trained neural nets performed with 90% and 96% accuracy respectively (or 94% and 99% if the most challenging specimens were discarded), confirming that deep learning is a useful and important technology for the future analysis of digitized museum collections.

“The results can be leveraged both to improve curation and unlock new avenues of research,” conclude the scientists.

“This research paper is a wonderful proof of concept. We now know that we can apply machine learning to digitized natural history specimens to solve curatorial and identification problems. The future will be using these tools combined with large shared data sets to test fundamental hypotheses about the evolution and distribution of plants and animals,” says Dr. Laurence J. Dorr, Chair of the Smithsonian Department of Botany.

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Original source:

Schuettpelz E, Frandsen P, Dikow R, Brown A, Orli S, Peters M, Metallo A, Funk V, Dorr L (2017) Applications of deep convolutional neural networks to digitized natural history collections. Biodiversity Data Journal 5: e21139. https://doi.org/10.3897/BDJ.5.e21139

Flightless survivors: Incredible invertebrate diversity in Los Angeles metropolitan area

Urban wildlife is surprisingly understudied. We tend to know more about animals in exotic places than about those that live in our cities.

This is why researchers Emile Fiesler, president of Bioveyda Biological Inventories, Surveys, and Biodiversity Assessments, USA, and Tracy Drake, manager of the Madrona Marsh Preserve, looked into the fauna of the Madrona Marsh Preserve, California, a small nature preserve in one of the world’s largest metropolitan areas.

Consequently, they published the astonishing number of 689 species of invertebrates, which have managed to survive decades of farming and oil exploration, followed by development pressures, in the open access Biodiversity Data Journal. The study was minimally invasive as the live animals have been recorded with macro-photography.

Even though it is the insects that first developed the ability to fly, long before the dinosaurs became birds, the latter have always received the most of our attention. This major evolutionary breakthrough, which has occurred more than once in the past, is also a reason why insects are currently the most diverse animals on earth in terms of number of species.

“Insects and other invertebrates have filled all ecological niches and all corners of our planet,” explain the authors. “No surprise that these small creatures conquered our cities and invaded our homes as well.”

Most of the urban dwellers, however, have been introduced – accidentally or deliberately – by humans.

“The remainder – native ‘wild’ species – are able to survive in the city mainly due to their adaptivity,” they point out. “It is therefore surprising to find a number of flightless species in a small area surrounded by urbanization.”

The Madrona Marsh Preserve is located in Torrance, which is part of the Los Angeles metropolitan area. The greater Los Angeles Metropolitan area is one of the world’s largest, with a human population of more than 17 million.

The Madrona Marsh Preserve, boasting seasonal wetlands, is well known as a birdwatchers’ paradise. Besides birds, its other vertebrates (mammals, reptiles, amphibians, and fishes), as well as its flowering plants, are relatively well known. The invertebrate fauna of the Preserve, on the other hand, aside from butterflies and dragonflies, was virtually unknown.

Interestingly, night surveys revealed the presence of a ‘second shift’ diversity, or creatures seemingly complementary to those active during the day.

Among the long-time survivors are wingless camel crickets as well as velvet ants, which are wasps whose flightless females look like furry ants. Another curiosity that intrigued the researchers is an obscure flightless female bradynobaenid wasp.

The researchers were especially surprised by their encounter with a large Solifugid [image 3] – also known as Camel Spider or Wind Scorpion. Solifugids are little-known arachnids that are neither spiders, nor scorpions, and can grow up to 15 cm (6 in). Their order’s name Solifugae translates from Latin as “those that flee from the sun”.

All in all, the biodiversity study resulted in 689 species without a backbone, belonging to 13 classes, 39 orders, and 222 families, found on this island surrounded by urbanization.

“Not unlike the moas and dodos, these ‘island’ inhabitants stayed grounded through the ages,” acknowledge the researchers.

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Original source:

Fiesler E, Drake T (2016) Macro-invertebrate Biodiversity of a Coastal Prairie with Vernal Pool Habitat. Biodiversity Data Journal 4: e6732. doi: 10.3897/BDJ.4.e6732

About the authors:

Emile Fiesler is president of Bioveyda Biodiversity Inventories, Surveys, and Studies, and Tracy Drake is manager of the Madrona Marsh Preserve.

Being systematic about the unknown: Grid-based schemes could improve butterfly monitoring

Butterfly monitoring schemes are at the heart of citizen science, with the general public and researchers collaborating to discover how butterfly populations change over time. To develop the concept further, a new paper in the journal Nature Conservation shows how systematically placed, grid-based transects can help schemes by reducing habitat bias.

Rapidly increasing in number and popularity, Butterfly Monitoring Schemes have proved to be a method generating important, high-resolution data. Reliant on enthusiastic volunteers, who record butterflies along freely chosen transects, the collected observations are then used to explore and understand trends in butterfly numbers and distributions.

However, there is a risk associated with free site selection: some habitats can become underrepresented and monitoring results therefore less general than intended.

Butterfly hot-spots, such as semi-natural grasslands, tend to be favoured over less well-known environments. This means that butterflies living in other ‘less popular’ habitats, such as forests and wetlands, are covered less thoroughly and population declines of these species risk going undetected.

A team of Swedish researchers have now investigated the potential of a new, complimentary grid-based design, where butterfly recorders are to walk systematically placed transects across the country.

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The results of testing the new method showed that butterflies were abundant in traditionally overlooked habitats such as coniferous forests, bogs, and clear-cuts. Additionally, the systematic transects also performed well in avoiding habitat bias.

“Butterfly Monitoring Schemes are likely to benefit from adding grid-based butterfly transects as a complement to free site choice designs,” explains Dr. Lars B. Pettersson from Lund University. “Free and systematic site selection should not be seen as mutually exclusive, instead they can be used together to ensure high quality and inclusiveness of data for better assessing of future biodiversity trends.”

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Additional information:

This work has been carried out within the EU project STEP (FP7 grant 244090-STEP-CP-FP) and the Swedish Butterfly Monitoring Scheme (Swedish EPA contract 2227-13-003). It is part of the strategic research area Biodiversity and Ecosystems in a Changing Climate, BECC.

Undergraduate student takes to Twitter to expose illegal release of alien fish in Japan

Posing a significant threat to the native biodiversity in Japan, specifically that of threatened aquatic insects, some alien fishes, such as the bluegill, have become the reason for strict prohibitions. All activities potentially capable of introducing the species into the wild are currently punishable by either a fine of up to 3 million yen for a person (100 million yen for corporations), or a prison sentence of up to 3 years.

Recently, ten years after the law has been adopted, illegal release of bluegill fish has been reported for the first time with the help of a post on Twitter from Akinori Teramura, undergraduate student at the Tokyo University of Marine Science and Technology and second author of the present study. The case is reported and discussed by him and two scientists, affiliated with Kanagawa Prefectural Museum of Natural History, Japan, in the open-access journal ZooKeys.

In June 2015, Akinori Teramura tweeted two photographs of the invasive bluegill fish, both adults and juveniles, along with two young goldfish, which do not belong to the local fauna, either. In his post he identified the species and shared his surprise at the irresponsibility of the people who had released the fish. When lead author Dr Yusuke Miyazaki saw the tweet, he signalled his colleagues with the idea to publish the information as a scientific report.

The student found them in an outdoor public pool in Yokohama city, Japan, while it was being cleaned before being opened ahead of the summer. Usually, these facilities are closed to the public during the colder seasons and it is then when native aquatic insect species, such as dragonflies and diving beetles, find spawning and nursery habitats in them. Curiously enough, though, the pool had been isolated from natural waters since its construction.

Therefore, the researchers conclude that the alien fishes have most likely been released from an aquarium from a local shop or an aquarist who no longer wanted them. However, the authors note that according to the law, keeping bluegill fish in a home aquarium is illegal as well.

“Our report demonstrates an example of web data mining in the discipline of Citizen Science,” say the authors. “Web data mining has been rapidly developing over recent years, and its potential continues to expand.”

“Community awareness of this issue needs to be improved, and widespread reporting of cases such as this one will help,” they conclude.

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Original source:

Miyazaki Y, Teramura A, Senou H (2016) Biodiversity data mining from Argus-eyed citizens: the first illegal introduction record of Lepomis macrochirus macrochirus Rafinesque, 1819 in Japan based on Twitter information. ZooKeys 569: 123-133. doi: 10.3897/zookeys.569.7577

Conservation hopes up for the endangered banana frog restricted to Southwest Ethiopia

As the natural forest cover in Ethiopia is already less than 3% of what it once has been, the banana frog species, dwelling exclusively in the remnants of the country’s southwestern forests in only two populations, is exposed to a great risk of extinction.

Through their survey, a research team, led by Matthias De Beenhouwer, Biodiversity Inventory for Nature Conservation (BINCO), Belgium, have now extended the species’ range, thus making the first steps to saving the charming frogs. The study is published in the open-access journal ZooKeys.

Although Ethiopia is known for its high number of both animal and plant species that do not live anywhere else in the world, there is a concerning lack of conservation activities to preserve the local biodiversity. Moreover, while as much as 41% of the amphibians ever recorded in the country are exclusive for its fauna, there have been only few researches. Without such, pointing the hotspots in greatest need of protection and restoration, as well as taking adequate measures subsequently, is impossible.

Concerned about the endangered status of the banana frog, and supported with a Rufford grant, Matthias and his team spent ten evenings, or 111 hours, in August 2014, seeking and collecting as many frogs as possible from seven different locations. When they determined the species status of the found individuals, it turned out that they have managed to discover several new populations of banana frogs from unexpected localities.

As a result of their survey, the geographical range of the Ethiopian banana frog has been expanded by roughly 40 km towards the North and 70 km to the East. Its altitudinal distribution already reaches a maximum of 2030 metres above sea level, compared to the previously known maximum of 1800 m.

Banana frogs being identified from outside forest habitats is also a good news for the species’ preservation since it shows that not only are the frogs more tolerable against forest degradation than expected, but that also there could be even more populations.

“Although Southwest Ethiopia is known to harbour the last large tracts of natural forest, forest cover has declined dramatically to less than 3% nationwide,” point out the researchers. “Therefore, accurate information on species conservation and distribution is an essential first step to facilitate the delivery of conservation updates, recognize biodiversity hotspots and encourage habitat protection and restoration.”

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Original source:

Mertens J, Jocqué M, Geeraert L, De Beenhouwer M (2016) Newly discovered populations of the Ethiopian endemic and endangered Afrixalus clarkei Largen, implications for conservation.ZooKeys 565: 141-146.doi: 10.3897/zookeys.565.7114