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Collaboration will increase flow of new species descriptions from scientists in developing countries, promote open access publishing

Washington, D.C. – February 10, 2012 – The Encyclopedia of Life (EOL) and Pensoft Publishers are pleased to announce a new collaboration that will increase the flow of new species descriptions from scientists in developing countries into the Encyclopedia of Life and promote the open access publishing model in taxonomy.

Many of Pensoft’s journals, including the International Journal of Myriapodology (centipedes and millipedes), MycoKeys (mycology), PhytoKeys (botany), and ZooKeys (zoology) will participate in the new EOL Open Access Support Project (EOASP).  The initiative will provide funding to support independent taxonomists and taxonomists living in developing countries to publish their results in Pensoft’s four quality journals with open access principles.

Any new species description published in one of the journals leads to the automatic creation of a new page in EOL. If a paper re-describes a poorly described species, that information will also appear on an EOL page.

During the manuscript submission process, the authors will have the opportunity to request financial support between 200 and 400 USD per paper, which covers the open access fee for 10 to 20 printed pages. The support for larger papers (e.g., monographs) will be limited to the same maximum of 400 USD; authors should meet the remaining costs themselves.

The EOASP initiative promotes the open access publishing model in taxonomy among researchers, students, citizen scientists, and general public and will support and educate the next generation of taxonomists in open science principles. EOASP also aims to motivate publishers to modernize their publishing models and workflows to fit the changing needs of scientists and researchers around the world.

Please visit Pensoft’s page to learn more about the eligibility criteria for manuscripts, authors and journals.

For more information about joining the EOASP initiative either as a funder or a publisher, please contact Cynthia Parr of Encyclopedia of Life, via secretariat [AT] eol.org

Several periods of field work during 2008 have led to the discovery of a new species of bamboo-feeding plant lice in Costa Rica’s high-altitude region “Cerro de la Muerte”. The discovery was made thanks to molecular data analysis of mitochondrial DNA. The collected records have also increased the overall knowledge of plant lice (one of the most dangerous agricultural pests worldwide) from the region with more that 20%. The study was published in the open access journal ZooKeys.

It is a well established fact that the arthropod fauna, to which plant lice also belong, is abundantly present in the tropical regions. Not so with plant lice, which prefer the temperate climates of the Northern Hemisphere. This has been a bit of a paradox for scientists although it is also known that plant lice diversity increases in high altitude areas, such as mountains and high plateaus. Such is the sampling area visited in Costa Rica: “Cerro de la Muerte”, or The Mountain of the Dead, the highest point in the Costa Rican section of the Inter-American Highway.

Many plant lice species feed only on one type (or even species) of plant; the diet of the newly described plant lice species consists (based on current data), for example, solely of a type of bamboo (Chusquea tomentosa). A molecular analysis was used to determine to which taxonomic genus it belongs (Rhopalosiphum). Its description is based also on molecular information of fragments of the mitochondrial DNA (COI), and on nuclear gene coding, in addition to morphologic external characteristics.

Plant lice are recognized among the biggest insect pests on agriculture and gardening. From a zoological point of view though, they are very successful organisms, which although present mainly in temperate climates, have the potential to threaten even tropical regions, dedicated to plant cultivation.

Original Source:
Pérez Hidalgo N, Martínez-Torres D, Collantes-Alegre JM, Villalobos Muller W, Nieto Nafría JM (2012) A new species of Rhopalosiphum (Hemiptera, Aphididae) on Chusquea tomentosa (Poaceae, Bambusoideae) from Costa Rica. ZooKeys 166: 59-73. doi: 10.3897/zookeys.166.2387

Contact:
Nicolás Pérez Hidalgo. University of Leon
nperh@unileon.es
(+34) 676145552

 

A conventionally written (MS Word) Checklist of vascular plants of the Departmentof Ñeembucú, Paraguay (De Egea et al. 2012), consisting of more than 4,100 taxon names,  was converted from text into Darwin Core Archive format and published simultaneously in both human-readable, traditional  publication and structured, machine-readable data. The process is described in an associated forum paper (Remsen et al. 2012).

The process was performed from the final revised version, after peer-review and editorial acceptance. The data were published and indexed through the Global Biodiversity Information Facility (GBIF) Integrated Publishing Toolkit (IPT) and significant portions of the text of the paper were used to describe the metadata on IPT. After publication, the data will become available through the GBIF infrastructure and can be re-used on their own or collated with other data.

The two papers were published in issue 9 of PhytoKeys. The study was supported in part by the ViBRANT project.

All identification keys, published in ZooKeys (since issue 50), PhytoKeys, and MycoKeys are now automatically indexed in KeyCentral, a platform of IdentifyLife – a collaborative partnership of the Atlas of Living Austlalia, Encyclopedia of Life and Moore Foundation.

KeyCentral collects information on various kinds of keys and allows users to search through taxa, regions, keywords, etc. Each key description links back to the original source, regardless whether it is an online key or a journal article.

The technology used by Pensoft’s journals, based on TaxPub, allows several keys published in the same article to be indexed as separate entities, increasing the probability for discovery, visibility and citation for the authors.

Encyclopedia of Life (EOL) and our journals have launched a Fabulous New Species collections on EOL. Please see the following blog post on the EOL News webpage, or read the text below:

As a next step in its fruitful collaboration with EOL, Pensoft has created two species collections on EOL – Fabulous ZooKeys New Species and Fabulous PhytoKeys New Species. The main aim of this initiative is to bring together and promulgate the scientifically notable new taxa described every year in Pensoft’s journals and simultaneously registered in EOL.

A short annotation written in a popular language explains why the new species is interesting and draws the attention of the general public and the world mass media. Starting with only a dozen taxon profiles, both collections are expected to grow fast considering that currently ZooKeys ranks second in the top 10 journals publishing new taxa, and is responsible for approximately 2.5% of all new taxa in the world described in the last three years.

Currently the collections comprise a nice selection of extraordinary newly described animal and plant species, such as:

The world’s smallest tetrapod, the New Guinea frog Paedophryne depot;

The Morafka’s desert tortoise Gopherus morafkai, whose discovery based on DNA evidence has conservation implications;

The tiny Brazilian plant Spigelia genuflexa found to be reproducing by geocarpy;

The New Zealand liverwort species Frullania knightbridgei, one of the first species described under the revolutionary new rules of the International Code of Botanical Nomenclature that allows new species to be published only in a digital form;

One of the smallest cave-dwelling ground beetles and living fossil, Paralovrcia beroni.

We kindly invite the EOL users to join the communities around these collections and to become part of Pensoft’s large family.

Please visit the Pensoft Publishers Community on EOL to share your comments and questions, or leave them here on the EOL Blog.

Intensive botanical explorations for taxonomic studies on the members of the ginger family (Zingiberaceae) in India by V.P. Thomas and M. Sabu of the University of Calicut, have resulted in the discovery of an interesting species of Amomum (Cardamom) from Silent Valley National Park on the Western Ghats of Kerala. The study was published in the open access journal PhytoKeys.

The ginger family consists of 53 genera and over 1,200 species, many of which are widely used as spices, for medical purposes, or simply for decoration. Amomum Roxb. is the second largest genus within the Zingiberaceae, comprising about 150-180 species, including several types of cardamom. Widely distributed in Southeast Asia, the genus is represented by 23 species in India, mostly restricted to North-East India, South India and the Andaman-Nicobar Islands.

In the new species, the authors show some similarities with A. masticatorium, although the two are clearly distinct. The new plant’s name refers to its locality, i.e. Nilgiri hills, a part of Western Ghats and one of the hotspots of the Indian subcontinent. The most notable feature of the plant is the presence of long ligules that reach up to 9 cm long and small flowers with a long corolla tube. Almost all parts of the plant are hairy.

It is a high altitude species (found above 1,200 m), and attempts to conserve it outside its natural locality were unsuccessful. The conservation status evaluation revealed that it falls under the critically endangered category of the International Union for Conservation of Nature, 2001. Conservation measures are to be carried out very urgently to recover the plant from extinction.

Original source:
Thomas VP, Sabu M, Prabhu Kumar KM (2012) Amomum nilgiricum (Zingiberaceae), a new species from Western Ghats, India. PhytoKeys 8: 99-104. doi: 10.3897/phytokeys.8.2152

Additional information:
From the 1st of January 2012, PhytoKeys is publishing each paper separately, on the day it is approved by the editors. The article by Prof Sabu is the closing one for the 8th issue of the journal, making it complete.

Related press releases on EurekAlert:

Brave new world: Pioneering electronic publication of new plant species

Jeanne Baret, botanist and first female circumnavigator, finally commemorated in name of new species

Early land plants: Early adopters – The first electronically described liverwort species comes from New Zealand

In 1766, Frenchwoman Jeanne Baret disguised herself as a man to work as assistant to renowned botanist Philibert Commerson on the first French circumnavigation of the globe. The expedition consisted of two ships under the command of Louis Antoine de Bougainville and was expected to take three years. A royal ordinance forbade women from being on French naval vessels; prejudice and custom prevented their participation in science. Nevertheless, Baret maintained her disguise all the time she was on board ship, and collected plants with Commerson in locations including Rio de Janeiro, the Strait of Magellan, Tahiti, Mauritius, and Madagascar. Baret was Commerson’s lover, but also an accomplished botanist in her own right. When Commerson’s ill health prevented him from fieldwork, Baret was responsible for all collections, including the most famous botanical specimen from the expedition: the vine that would be named in honor of its commander, Bougainvillea Comm. ex Juss.

The couple collected over six thousand specimens, now incorporated into the French National Herbarium at the Muséum National d’Histoire Naturelle. In the course of the expedition and the years after its successful completion, over seventy species would be named in honor of Commerson using the specific epithet commersonii. But Commerson died before he could publish many designations proposed in his notes, which reveal his intention to name the Malagasy genus Baretia. The species concerned are now placed in the genus Turraea of the family Meliaceae. Baret has therefore been left without anything in the natural world to commemorate her name. That is now to change as University of Utah and University of Cincinnati biologist Eric Tepe has named a new species in honor of Baret: Solanum baretiae.

Tepe learned of Baret when he heard an NPR interview with Baret’s biographer, Glynis Ridley, author of The Discovery of Jeanne Baret (Crown, 2010).

S. baretiae is a vine endemic to the Amotape-Huancabamba zone of southern Ecuador and northern Peru and grows in the understory of montane forests and disturbed roadside and pasture vegetation. Its flower petals have been seen in shades of violet, yellow, or white. The leaves of S. baretiae are highly variable in shape, as are the leaves of the species that Commerson originally intended to name after Baret. Then, as now, this seems a fitting tribute to a botanist uniting seemingly contradictory qualities: a woman dressed as a man, a female botanist in a male-dominated field, and a working class woman who travelled farther than most aristocrats of her time.

Original source:
Tepe EJ, Ridley G,Bohs L (2012) A new species of Solanum named for Jeanne Baret, an overlooked contributor to the history of botany. PhytoKeys 8: 37-47. doi: 10.3897/phytokeys.8.2101

Links (audio): http://www.npr.org/2010/12/26/132265308/a-female-explorer-discovered-on-the-high-seas

The open-access journal PhytoKeys – known for applying cutting edge technologies in publishing and dissemination to accelerate biodiversity research – is pioneering an electronic-only publishing workflow in a series of papers published over the course of the first week of January 2012 (see related press release).

As of the 1st of January 2012, extensive new changes took effect to the way plant scientists name new plants, algae, and fungi. Traditionally, the publication of new plant names, which is governed by the International Code of Botanical Nomenclature (ICBN), has never allowed publication of new names in anything other than print on paper. "Without such codes governing naming, there would be chaos, potentially impacting all branches of life sciences as the name of a species – be it a pathogen or a crop – represents a fundamental part of communicating knowledge about the natural world." said Dr. Sandra Knapp from the Natural History Museum London, Deputy Editor-in-Chief of PhytoKeys and author of the first electronic-only description of a new species, Solanum umtuma (a relative of tomatoes and many other important plant species), published on 1st of January 2012.

Lead authors, ex-pat New Zealander Dr. Matt von Konrat, based at the Field Museum in Chicago, and Dr. Peter De Lange, a plant scientist of the Department of Conservation, described – also in PhytoKeys – a new liverwort species from New Zealand under the revolutionary new rules that allow electronic publication.

"The electronic publishing of new names will not only facilitate the work of taxonomists and publishers", said Dr. W. John Kress from the Smithsonian Institution, Editor-in-Chief of the open access journal PhytoKeys, "but this innovation will accelerate the whole process of scientific discovery and description of new plants. As natural habitats are degraded at an ever faster rate, it is crucial that botanists speed up their work on finding and describing new species of plants before they are threatened with extinction"! "This is particularly pertinent to biodiversity hotspots, such as New Zealand", added both von Konrat and de Lange.

"Scientific papers published in PhytoKeys are freely downloadable for anyone to read and use, which is particularly significant in smaller countries like New Zealand, where many individual researchers and smaller institutions would not otherwise have access to many scientific serials", commented Prof. Lyubomir Penev, Founder and Managing Editor of PhytoKeys.

The newly described species is from a group of plants commonly referred to as liverworts. "This group of generally small-sized plants forms an incredibly conspicuous and significant component in New Zealand ecosystems. Based on our present knowledge, New Zealand may have almost 10% of the world’s species of liverworts – a little-known but widespread group of plants – which are related to those that first colonized land millions of years ago. That is an astonishing figure", said Dr. von Konrat.

New Zealand has a high proportion of endemic plant species that are not found anywhere else in the world. Some of these are like the Tuatara’s of the plant world, and are very significant towards our understanding of early land plant evolution. On the other hand, "the new species underscores how this enigmatic group of plants has been largely overlooked compared to seed plants and our fauna, especially on many of our offshore islands which harbour significant biodiversity" commented Dr. Peter de Lange.’

Liverworts are being increasingly recognized by everyday New Zealand people and world-wide as beautiful and important contributions to global biodiversity, as important environmental indicators and as potential indicators of global warming. Indeed, in 2011, two liverworts – the highly threatened Frullania wairua (itself known only from a seriously threatened tree, Bartlett’s Rata) and Lejeunea hawaikiana – received a top 10 listing in the annual New Zealand Plant Conservation Network "vote for your favourite plant" competition.

The new liverwort species, named Frullania knightbridgei, is particularly noteworthy because it involved national and international participants from universities, museums, and government departments", said von Konrat, "and was named after a prominent New Zealand conservationist, Phil Knightbridge, who earlier this year passed away." "The continued collaborative efforts between agencies such as the Department of Conservation and international research institutes such as The Field Museum and our partners, which currently have the resources to undertake expensive DNA analysis, will help uncover more of the as yet hidden biodiversity of this group of plants. The new species was first discovered in Rakiura/Stewart Island, an area of high rainfall, which is particularly significant as this group of plants, together with mosses, are able to soak up water like a sponge and critical in preventing deleterious effects of high rainfall," said von Konrat.

Original sources:
von Konrat M, de Lange P, Matt Greif M, Strozier L, Hentschel J, Heinrichs J (2012) Frullania knightbridgei, a new liverwort (Frullaniaceae, Marchantiophyta) species from the deep south of Aotearoa-New Zealand based on an integrated evidence-based approach. PhytoKeys 8: 13-36. doi: 10.3897/PhytoKeys.8.2496
Vorontsova MS, Knapp S (2012) A new species of Solanum (Solanaceae) from South Africa related to the cultivated eggplant. PhytoKeys 8: 1-11. doi: 10.3897/PhytoKeys.8.2462

The changes to the publication requirements of new names for algae, fungi and plants accepted at the XVIII International Botanical Congress in Melbourne in July 2011 initiated several important challenges to scientists, publishers and information specialists. To address practical questions arising from the Congress decisions, the open access journal PhytoKeys will publish a series of seven exemplar papers, one each day for the first week of 2012, starting from the 1st of January. The completed journal issue will be printed as an additional, though not mandatory, form of archiving on the 7th of January 2012.

"Electronic-only publishing in botany means that publishers do not need to produce printed versions of their journals to verify that a new name has been effectively published", said Dr Sandra Knapp from the Natural History Museum London, deputy editor of PhytoKeys and one of the authors of the first electronic-only description of a new African species of Solanum (the genus name for tomatoes and many other important plant species), published on the 1st of January 2012. "This important change, however, needs to be supported by strong, responsible practices by both publishers and authors, one of the most important being the proper archiving of the published paper" added Dr Knapp, "It is important to reiterate that these new rules do not mean new names can be published anywhere online; authors and publishers must work together."

"Beyond the mandatory deposition in trusted international electronic archives, such as the open access archive of the National Library of Medicine of the United States, the best possible guarantee for a proper preservation of the published information is open access. This allows an unlimited number of copies to be freely downloaded and stored in different institutional and private archives throughout the world, as well as being available to researchers, particularly in developing countries, who otherwise would not have access to many scientific serials", commented Dr Matt von Konrat from the Field Museum of Chicago, author of a new species of liverwort (closest living descendants of the earliest plants to grow on land) from New Zealand, to be published electronically on the 2nd of January 2012.

From the 1st of January 2012 PhytoKeys will publish taxonomic papers on the day they are approved by the editors. The electronic versions of the paper will be archived in PubMedCentral. In addition, each species description will be exported on the day of publication to the Encyclopedia of Life, to the Wiki environment Species-id. All biological data will be shared or linked with many international databasing initiatives. The bibliographic information in each paper will be harvested automatically by the Citebank database of the Biodiversity Heritage Library, the main German aggregator for biological information Vifabio.de and many others. Although not required by the Code, each new flowering plant species description will bear a unique identifier from the International Plant Names Index (IPNI), housed at Royal Botanical Gardens Kew in the UK.

Will PhytoKeys continue to produce a printed version? "Definitely, yes!", replied Prof. Lyubomir Penev, managing editor of the journal and founder of Pensoft Publishers, who launched PhytoKeys in 2009. "We shall not only maintain printing a full-color printed version of the journal, but will continue sending complimentary copies to leading botanical libraries to ensure 100 % secure archiving".

"PhytoKeys was the first journal to announce the new changes to the Code of Nomenclature for algae, fungi and plants in a paper published during the main sessions of the Melbourne Congress, bringing the news to a wide audience. Now we are proud to pioneer the practical implementation of these new rules, paving the way for other taxonomic journals to follow", concluded Dr W. John Kress from the Smithsonian Institution in Washington D.C., Editor-in-Chief of PhytoKeys.

Original source:
Vorontsova MS, Knapp S (2012) A new species of Solanum (Solanaceae) from South Africa related to the cultivated eggplant. PhytoKeys 8: 1-11. doi: 10.3897/PhytoKeys.8.2462

Additional Information:
Miller JS, Funk VA, Wagner WL, Barrie F, Hoch PC, Herendeen P (2011) Outcomes of the 2011 Botanical Nomenclature Section at the XVIII International Botanical Congress. PhytoKeys 5: 1-3. doi: 10.3897/PhytoKeys.5.185

A mysterious line where two millipede species meet has been mapped in northwest Tasmania, Australia. Both species are common in their respective ranges, but the two millipedes cross very little into each other’s territory. The ‘mixing zone’ where they meet is about 230 km long and less than 100 m wide where carefully studied.

The mapping was done over a two-year period by Dr Bob Mesibov, who is a millipede specialist and a research associate at the Queen Victoria Museum and Art Gallery in Launceston, Tasmania. His results have been published in the open access journal ZooKeys.

‘I have no idea why the line is so sharp’, said Dr Mesibov. ‘The boundary runs up and down hills, crosses rivers and different bedrocks and soils, and ignores vegetation type and climate differences. Its position and its sharpness seem to be the result of an unexplained biological arrangement between the two millipede species.’

Biogeographers use the term ‘parapatry‘ for the case where two species ranges meet but do not overlap, or overlap very little. Dr Mesibov said that parapatry has been reported before in other species of millipedes and in other terrestrial invertebrate animals, in Tasmania and elsewhere in the world. However, parapatric boundaries often parallel a geographical feature, such as a ridgeline, or a steep rainfall gradient.

‘There does not seem to be an ecological or a geographic explanation for this particular boundary, or for any part of it. It is also longer than any other parapatric boundary I know about. At 230 km, it is 50% longer than the boundary between England and Scotland, and the ‘border control’ is a lot better than what we humans can do.’

The two millipede species, Tasmaniosoma compitale and T. hickmanorum, are in the same genus and thought to be closely related. They were first scientifically described in 2010, by the same author and again in ZooKeys. The parapatric boundary was mapped as a background study for later investigations of speciation in this group of millipedes, and of the mechanism of parapatry.

SOURCE:
Mesibov R (2011) A remarkable case of mosaic parapatry in millipedes. In: Mesibov R, Short M (Eds) Proceedings of the 15th International Congress of Myriapodology, 18-22 July 2011, Brisbane, Australia. ZooKeys 156: 71–84. doi: 10.3897/zookeys.156.1893

PREVIOUS NEWS COVERAGE:
http://www.abc.net.au/news/2011-08-02/020811-millipedes/2821498 [Australian TV news story, and accompanying online text]

RELATED BACKGROUND:
Mesibov, R (2010) The millipede genus Tasmaniosoma Verhoeff, 1936 (Diplopoda: Polydesmida: Dalodesmidae) from Tasmania, Australia, with descriptions of 18 new species. ZooKeys 41: 31-80. doi: 10.3897/zookeys.41.420

MILLIPEDE WEBSITE LINKS:
Tasmanian Multipedes (a student/naturalist guide to the centipedes, millipedes and velvet worms of Tasmania)
http://www.polydesmida.info/tasmanianmultipedes

External Anatomy of Polydesmida (a student/naturalist guide to how Polydesmida millipedes are built; this is the group to which the two parapatric millipede species belong)
http://www.polydesmida.info/polydesmida/

Millipedes of Australia (a taxonomist’s resource – no images or identification keys)
http://www.polydesmida.info/millipedesofaustralia/