Category: Research Ideas and Outcomes (RIO Journal)

Plazi and Pensoft join forces to let biodiversity knowledge of coronaviruses hosts out

Pensoft’s flagship journal ZooKeys invites free-to-publish research on key biological traits of SARS-like viruses potential hosts and vectors; Plazi harvests and brings together all relevant data from legacy literature to a reliable FAIR-data repository

To bridge the huge knowledge gaps in the understanding of how and which animal species successfully transmit life-threatening diseases to humans, thereby paving the way for global health emergencies, scholarly publisher Pensoft and literature digitisation provider Plazi join efforts, expertise and high-tech infrastructure. 

By using the advanced text- and data-mining tools and semantic publishing workflows they have developed, the long-standing partners are to rapidly publish easy-to-access and reusable biodiversity research findings and data, related to hosts or vectors of the SARS-CoV-2 or other coronaviruses, in order to provide the stepping stones needed to manage and prevent similar crises in the future.

Already, there’s plenty of evidence pointing to certain animals, including pangolins, bats, snakes and civets, to be the hosts of viruses like SARS-CoV-2 (coronaviruses), hence, potential triggers of global health crises, such as the currently ravaging Coronavirus pandemic. However, scientific research on what biological and behavioural specifics of those species make them particularly successful vectors of zoonotic diseases is surprisingly scarce. Even worse, the little that science ‘knows’ today is often locked behind paywalls and copyright laws, or simply ‘trapped’ in formats inaccessible to text- and data-mining performed by search algorithms. 

This is why Pensoft’s flagship zoological open-access, peer-reviewed scientific journal ZooKeys recently announced its upcoming, special issue, titled “Biology of pangolins and bats”, to invite research papers on relevant biological traits and behavioural features of bats and pangolins, which are or could be making them efficient vectors of zoonotic diseases. Another open-science innovation champion in the Pensoft’s portfolio, Research Ideas and Outcomes (RIO Journal) launched another free-to-publish collection of early and/or brief outcomes of research devoted to SARS-like viruses.

Due to the expedited peer review and publication processes at ZooKeys, the articles will rapidly be made public and accessible to scientists, decision-makers and other experts, who could then build on the findings and eventually come up with effective measures for the prevention and mitigation of future zoonotic epidemics. To further facilitate the availability of such critical research, ZooKeys is waiving the publication charges for accepted papers.

Meanwhile, the literature digitisation provider Plazi is deploying its text- and data-mining expertise and tools, to locate and acquire publications related to hosts of coronaviruses – such as those expected in the upcoming “Biology of pangolins and bats” special issue in ZooKeys – and deposit them in a newly formed Coronavirus-Host Community, a repository hosted on the Zenodo platform. There, all publications will be granted persistent open access and enhanced with taxonomy-specific data derived from their sources. Contributions to Plazi can be made at various levels: from sending suggestions of articles to be added to the Zotero bibliographic public libraries on virus-hosts associations and hosts’ taxonomy, to helping the conversion of those articles into findable, accessible, interoperable and reusable (FAIR) knowledge.

Pensoft’s and Plazi’s collaboration once again aligns with the efforts of the biodiversity community, after the natural science collections consortium DiSSCo (Distributed System of Scientific Collections) and the Consortium of European Taxonomic Facilities (CETAF), recently announced the COVID-19 Task Force with the aim to create a network of taxonomists, collection curators and other experts from around the globe.

Recursive language and modern imagination were acquired simultaneously 70,000 years ago

The lion-man sculpture from Germany (dated to 37,000 years ago) must have been first imagined by the artist by mentally synthesizing parts of the man and beast together and then executing the product of this mental creation in ivory. The composite artworks provide a direct evidence that by 37,000 years ago humans have acquired prefrontal synthesis.
Image by JDuckeck
[Public domain, https://commons.wikimedia.org/wiki/File:Lion_man_photo.jpg, Wikimedia Commons]

A genetic mutation that slowed down the development of the prefrontal cortex (PFC) in two or more children may have triggered a cascade of events leading to acquisition of recursive language and modern imagination 70,000 years ago.

This new hypothesis, called Romulus and Remus and coined by Dr. Vyshedskiy, a neuroscientist from Boston University, might be able to solve the long-standing mystery of language evolution. It is published in the open-science journal Research Ideas and Outcomes (RIO).

Numerous archeological and genetic evidence have already convinced most paleoanthropologists that the speech apparatus has reached essentially modern configurations before the human line split from the Neanderthal line 600,000 years ago. Considering that the chimpanzee communication system already has 20 to 100 different vocalizations, it is likely that the modern-like remodeling of the vocal apparatus extended our ancestors’ range of vocalizations by orders of magnitude. In other words, by 600,000 years ago, the number of distinct verbalizations used for communication must have been on par with the number of words in modern languages.

On the other hand, artifacts signifying modern imagination, such as composite figurative arts, elaborate burials, bone needles with an eye, and construction of dwellings arose not earlier than 70,000 years ago. The half million-year-gap between the acquisition of the modern speech apparatus and modern imagination has baffled scientists for decades.

While studying acquisition of imagination in children, Dr. Vyshedskiy and his colleagues discovered a temporal limit for the development of a particular component of imagination. It became apparent that modern children who have not been exposed to full language in early childhood never acquire the type of active constructive imagination essential for juxtaposition of mental objects, known as Prefrontal Synthesis (PFS).

Dr. Vyshedskiy explains:

“To understand the importance of PFS, consider these two sentences: “A dog bit my friend” and “My friend bit a dog.” It is impossible to distinguish the difference in meaning using words or grammar alone, since both words and grammatical structure are identical in these two sentences. Understanding the difference in meaning and appreciating the misfortune of the 1st sentence and the humor of the 2nd sentence depends on the listener’s ability to juxtapose the two mental objects: the friend and the dog. Only after the PFC forms the two different images in front of the mind’s eye, are we able to understand the difference between the two sentences. Similarly, nested explanations, such as “a snake on the boulder to the left of the tall tree that is behind the hill,” force listeners to use PFS to combine objects (a snake, the boulder, the tree, and the hill) into a novel scene. Flexible object combination and nesting (otherwise known as recursion) are characteristic features of all human languages. For this reason, linguists refer to modern languages as recursive languages.”

Unlike vocabulary and grammar acquisition, which can be learned throughout one’s lifetime, there is a strong critical period for the development of PFS and individuals not exposed to conversations with recursive language in early childhood can never acquire PFS as adults. Their language is always lacking understanding of spatial prepositions and recursion that depend on the PFS ability. In a similar manner, pre-modern humans would not have been able to learn recursive language as adults and, therefore, would not be able to teach recursive language to their own children, who, as a result, would not acquire PFS. Thus, the existence of a strong critical period for PFS acquisition creates a cultural evolutionary barrier for acquisition of recursive language.

The second predicted evolutionary barrier was a faster PFC maturation rate and, consequently, a shorter critical period. In modern children the critical period for PFS acquisition closes around the age of five. If the critical period in pre-modern children was over by the age of two, they would have no chance of acquiring PFS. A longer critical period was imperative to provide enough time to train PFS via recursive conversations.

An evolutionary mathematical model, developed by Dr. Vyshedskiy, predicts that humans had to jump both evolutionary barriers within several generations since the “PFC delay” mutation that is found in all modern humans, but not in Neanderthals, is deleterious and is expected to be lost in a population without an associated acquisition of PFS and recursive language. Thus, the model suggests that the “PFC delay” mutation triggered simultaneous synergistic acquisition of PFS and recursive language.

This model calls for:

  • two or more children with extended critical period due to “PFC delay” mutation;
  • these children spending a lot of time talking to each other;
  • inventing the recursive elements of language, such as spatial prepositions;
  • acquiring recursive-conversations-dependent PFS;
  • teaching recursive language to their offsprings.

The hypothesis is named after the celebrated twin founders of Rome, Romulus and Remus. Similar to legendary Romulus and Remus, whose caregiver was a wolf, the real children’s caregivers had an animal-like communication system with many words, but no recursion. Their parents could not have taught them spatial prepositions or recursion; children had to invent recursive elements of language themselves. Such an invention of a new recursive language has been observed in contemporary children, for example among deaf children in Nicaragua.

“The acquisition of PFS and recursive language 70,000 years ago resulted in what was in essence a behaviorally new species: the first behaviorally modern Homo sapiens,” concludes Dr. Vyshedskiy. “This newly acquired power for fast juxtaposition of mental objects in the process of PFS dramatically facilitated mental prototyping and led to fast acceleration of technological progress. Armed with the unprecedented ability to mentally simulate any plan and equally unprecedented ability to communicate it to their companions, humans were poised to quickly become the dominant species.”

Humans acquired an ability to trap large animals and therefore gained a major nutritional advantage. As the population grew exponentially, humans diffused out of Africa and quickly settled in the most habitable areas of the planet, arriving in Australia around 50,000 years ago. These humans were very much like modern humans since they possessed both components of full language: the culturally transmitted recursive language along with the innate predisposition towards PFS, enabled by the “PFC delay” mutation.

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Original source:

Vyshedskiy A (2019) Language evolution to revolution: the leap from rich-vocabulary non-recursive communication system to recursive language 70,000 years ago was associated with acquisition of a novel component of imagination, called Prefrontal Synthesis, enabled by a mutation that slowed down the prefrontal cortex maturation simultaneously in two or more children – the Romulus and Remus hypothesis. Research Ideas and Outcomes 5: e38546. https://doi.org/10.3897/rio.5.e38546