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Lying forgotten in museum collections two new species of yellow-shouldered bats have been unearthed by scientists at the American Museum of New York and The Field Museum of Natural History and described in the open access journal ZooKeys. These two new additions to the genus Sturnira are part of a recent discovery of three bats hidden away in collections around the world, the third one still waiting to be officially announced.

Up until recently the genus Sturnira was believed to contain only 14 species. In the last years closer morphological and molecular analysis have revealed an unexpected species richness in the genus. Sturnira now includes 22 described species, making it the most speciose genus in the Neotropical bat family Phyllostomidae.

Phyllostomidae, or the New World leaf-nosed bats are exclusively found in the biodiversity rich tropical areas of Central and South America. Both the scientific and common names of these bats refer to their often large, lance-shaped noseleaves. Because these bats use echolocation to orientate in the darkness the “nose-leaf” is thought to serve some role in fine-tuning their call.

All species in the yellow-shouldered genus Sturnira are frugivorous which means they feed largely on fruit. They are endemic to the Neotropics where they inhabit tropical lowland and montane forests. In fact the greatest diversity in the genus occurs on the elevated forested slopes of the Andes where at least 11 species occur.

The two newly described species, Sturnira bakeri and Sturnira burtonlimi occur in western Ecuador and in Costa Rica and Panama. The reason why they went unrecognized in collections is a superficial resemblance with other species in the genus, most of which were described without adequate illustrations to communicate identifying characteristics. Only after an in-depth molecular analysis that included over 100 samples from most of the species of the genus could the new species be identified. “Modern electronic publications likeZooKeys permit extensive and detailed color photography to accompany taxonomic descriptions. Any reader can easily and clearly appreciate the character states we use to distinguish these new taxa.” said co-author Bruce Patterson.

Original Source:

Velazco PM, Patterson BD (2014) Two new species of yellow-shouldered bats, genus Sturnira Gray, 1842 (Chiroptera, Phyllostomidae) from Costa Rica, Panama and western Ecuador. ZooKeys 402: 43-66. doi:10.3897/zookeys.402.7228

Two new species of weakly electric fishes from the Congo River basin are described in the open access journal ZooKeys. One of them, known from only a single specimen, is named “Petrocephalus boboto.” “Boboto” is the word for peace in the Lingala language, the lingua franca of the Congo River, reflecting the authors’ hope for peace in troubled Central Africa.

On a 2010 field trip to the Congo River of Democratic Republic of the Congo, in the riverside village of Yangambi-Lokélé, French ichthyologist Sébastien Lavoué of the Taiwan Institute of Oceanography and American ichthyologist John Sullivan of Cornell University, both specialists on mormyrid weakly electric fishes, captured a single individual of the genus Petrocephalus not quite like any they had seen before.

“Sébastien has the best eye of anyone in the world for Petrocephalus,” says Sullivan. “So when he wasn’t certain what species it belonged to, we flagged it as one to look at carefully once we got home.”

As they had for hundreds of other Petrocephalus specimens collected in Central Africa since the late 1990s, they placed the small, silvery fish in a small basin with water from the river and recorded its electric organ discharge (EOD) with an oscilloscope, humanely euthanized it, took its photo, procured a tissue sample for DNA analysis, tagged it and preserved it in formaldehyde.

Petrocephalus are African weakly fishes of the family Mormyridae that produce pulses of only a few hundred millivolts from an organ made of modified muscle cells in front of their tail. Receptor cells on the fishes’ skin detect distortions to the electric field created by nearby objects in the water. In this way, they are able to “electrolocate” through their complex aquatic environment at night. Their short electric pulses, too weak to be sensed by touch, are also used to communicate the sender’s species identity and gender to other electric fishes.

When Sullivan and other researchers collect live electric fishes in the field, they routinely make recordings of these EODs, one fish at a time, so that they can later study and compare the signals and the specimens’ anatomy together. Specimens are individually tagged so that after they are preserved and placed in a museum collection, they remain linked to their EOD recordings. “With these electric fishes it is often difficult to determine where the species boundaries are, and we need all the available evidence, from morphology, DNA and their EODs to figure it out.” Sullivan said. In this case, the EOD of this odd Petrocephalus was not so different from EODs of other species in this genus.

Back in his laboratory in Taipei, Lavoué sequenced the gene cytochrome b from the specimen. Comparing this sequence to those from other Petrocephalus specimens and careful examination of the fish’s morphology and its EOD helped him determine that it belonged to an undescribed species. “Describing a new species from a single specimen is far from ideal,” Lavoué said, “but in this case it seemed the best thing to do. In the places we’ve sampled, it’s obviously very rare. Since we haven’t yet found any locality where it’s common, it’s unlikely we’ll find such a locality anytime soon.”

Lavoué and Sullivan named this species “Petrocephalus boboto“: the word “boboto” means peace and fellowship in the Lingala language spoken along the Congo River.

“We named this hard-to-find Petrocephalus species “boboto” in the hopes that solutions for peace—though elusive like this fish—can be found in eastern D.R. Congo and the other troubled areas of Central Africa,” said Sullivan.

The other new Petrocephalus species Lavoué and Sullivan describe in the paper, also from the Congo River basin, is named for their colleague, Matthew Arnegard, another mormyrid researcher currently working at the Fred Hutchinson Cancer Research Center in Seattle, Washington.

Funding:

The research that led to the discovery of the two new Petrocehpalus species was funded by the National Science Foundation of the United States and a Fulbright scholarship to J. Sullivan.

 

Original Source:

Lavoué S, Sullivan JP (2014) Petrocephalus boboto and Petrocephalus arnegardi, two new species of African electric fish (Osteoglossomorpha, Mormyridae) from the Congo River basin. ZooKeys 400: 43. doi: 10.3897/zookeys.400.6743

 

Contact:

John P. Sullivan,
PhD., Collection Archivist & Curatorial Affiliate,
Cornell University Museum of Vertebrates,
159 Sapsucker Woods Rd, Ithaca, NY 14850.
Email: jpsullivan@cornell.edu
Tel: 607.342.2234

Seabirds nest in places that are inaccessible for most humans – vertical cliffs and remote islands surrounded by raging waves. Worse still, many seabirds lay their eggs in burrows or cavities where they are protected from inclement weather and invisible for researchers. Hidden under rocks or in burrows during the day, and flying around only during dark nights – counting these birds is a researcher’s nightmare.

Despite their cryptic behaviour, the seabirds are ill-prepared to fend off furry invaders. Humans have brought cats and rats to many islands around the world, where the cats and rats roam freely and kill seabirds. Especially those seabirds that nest in burrows are often unable to escape, and many species have disappeared from islands where cats or rats have been introduced.

Although researchers have known for decades that many seabirds are in trouble, it is surprisingly hard to put a number on how fast populations decline. “Those species that are most vulnerable to rats are often the ones that are the most difficult to count.” says Steffen Oppel, a Conservation Scientist with the RSPB who recently tested a new approach to count the invisible birds with colleagues from SPEA in Portugal.

Seabirds that nest underground may be all but invisible in their breeding colonies, but they are very noisy at night. And the more birds there are, the louder a colony is. Oppel and his colleagues set up sound recorders on a remote island in the North Atlantic for two years to ‘count’ the number of nesting birds by recording their calls at night. They painstakingly counted every nest near the recorders to test whether larger colonies do in fact make more noise. The study was published in the open access journal Nature Conservation.

“Recording seabird calls for a few months is the easy part – but making sense of 1000s of hours of sound recording is quite tricky.” says Oppel. Together with Matthew McKown, a seabird researcher who specialises on sound recordings, the team developed an algorithm that automatically counted the seabird calls in terabytes of recordings. The results conformed with expectations: places with the most nests did indeed register the highest number of calls. With that relationship established, the team then extrapolated the seabird population size for the entire island – a number that had so far been derived from wild guesses.

“Estimating exactly how many birds nest on a cliff is not very precise.” admits Oppel, but the sound recordings provide a very valuable index of how large seabird colonies are. “We can use this index over time to assess whether colonies are stable or decreasing – which is extremely important for many remote colonies about which we know very little.”

Original source:

Oppel S, Hervías S, Oliveira N, Pipa T, Silva C, Geraldes P, Goh M, Immler E, McKown M (2014) Estimating population size of a nocturnal burrow-nesting seabird using acoustic monitoring and habitat mapping. Nature Conservation 7: 1–13. doi: 10.3897/natureconservation.7.6890

Hidden in one of Australia’s most developed and fastest growing areas lives one of the world’s smallest freshwater crayfish species. Robert B McCormack the Team Leader for the Australian Crayfish Project described the new species belonging to the genus Gramastacus, after 8 years of research in the swamps and creeks of coastal New South Wales, Australia. The study was published in the open access journal ZooKeys.

Being a small crayfish species it has remained undescribed and undiscovered in one of the fastest developing regions of Australia. Only one other species of Gramastacus crayfish is known and it occurs some 900 km away in the Grampians region of Victoria.

This new species is found in lowland ephemeral habitats surrounding coastal lakes and lagoons from Wamberal Lagoon, north along the coastal strip to Wallis Lake. Being dependent on regular natural flooding and drying cycles, only lowland, swampy areas are suitable for this tiny crayfish.

Each crayfish digs a small rounded cross-section burrow up to one metre deep into the water table to survive the drying cycle. Some areas are riddled with these small burrows as they are a very prolific species and can occur in very high numbers in small habitat areas.

The newly described crayfish are found in one of Australia’s most developed regions. Unfortunately, this means that much of their habitat has been lost in the past as these ephemeral areas are the first to be drained or reclaimed to make way for agriculture, industry, housing developments, golf courses, infrastructure, etc. Now, being found and officially described, this crayfish must be considered in any further developments and hopefully future habitat loss will be reduced.

The scattered populations of Gramastacus seem highly fragmented and many are increasingly threatened by a range of risks other than human development. Invasive crayfish, pest fish species like plague minnows and swordtails, rising sea levels and falling water tables all are increasing dangers. Luckily, the large number of National Parks and Reserves along the coastal strip provides safe refuges for some populations.

About the Australian Crayfish Project:

Started in 2005 The Australian Crayfish Project (ACP) is a privately funded project run entirely by volunteers with a thirst for knowledge on freshwater crayfish. We all freely give our time and resources to support the project. Australia has one of the most diverse ranges of freshwater crayfish species on the planet yet there is much confusion with the description and distribution of species and many species remain undiscovered & undescribed. The project is discovering dozens of new species or new populations that were never known to exist. Our aim is to find and identify all species of freshwater crayfish and their habitat, the bottom line is that if no one knows these species are there and they don’t even have a name then how can they be protected and conserved into the future? The results of this project will ensure that all management agencies take the crayfish and their habitat into consideration for future environmental, conservation, development and catchment management plans, etc.

Australia’s unique crayfish are important keystone species which have a disproportionately large effect on the whole catchment relative to their abundance. They play a critical role in maintaining the structure of the whole ecological community, their prosperity and abundance directly affecting the health and abundance of numerous other species (macroinvertebrates, fish, eels, turtles, lizards, snakes, water rats, platypus and birds, to name just a few) in the ecosystem. Please help us help the crayfish and all the other species that rely on them for their survival. http://www.aabio.com.au/the-australian-crayfish-project/

 

Original source:

McCormack RB (2014) The eastern swamp crayfish Gramastacus lacus sp. n. (Decapoda, Parastacidae) a new species of freshwater crayfish from coastal New South Wales, Australia. ZooKeys 398: 53–67. doi: 10.3897/zookeys.398.7544

 

Additional Information:

Article under conservation and research Australian Aquatic Biological.

For a full list of all Australian Freshwater Crayfish:

http://www.aabio.com.au/crayfish-list/

The horseshoe worm is a worm-like marine invertebrate inhabiting both hard and soft substrates such as rock, bivalve shells, and sandy bottom. The name “horseshoe” refers to the U-shaped crown of tentacles which is called “lophophore.” Horseshoe worms comprise a small phylum Phoronida, which contains only ten species decorating the bottom of the oceans.

The new species Phoronis emigi, the eleventh member of the group described in the open access journal ZooKeys, comes after a long 62 year gap of new discoveries in the phylum. It is unique in the number and arrangement of body-wall muscle bundles and the position of the nephridia which is the excretory organ of some invertebrates. The new species is morphologically similar to sand-dwelling species Phoronis psammophila and it is also closely related to Phoronis hippocrepia, which inhabits hard substrate.

The morphology of the topotypes for Phoronis ijimai is also described in this study after 117 years since its original description. The combination of a detailed observation of the internal morphologies and the molecular phylogenetic analyses including the topotypes ensure a synonymy between P. ijimai and the northeastern pacific species Phoronis vancouverensis that has long been disputed.

“It is necessary to use both internal anatomy and molecular data for reveal the global diversity of horseshoe worm. The known phoronid diversity still remains low, with all specimens reported from limited habitats and the localities by the limited reports. Investigations at new localities or habitats may yield additional species in the future.”, explains Dr Masato Hirose, Atmosphere and Ocean Research Institute, The University of Tokyo, Japan.

Original source:

Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1. doi: 10.3897/zookeys.398.5176

Zoosystematics and Evolution moves to Pensoft Publishers to combine tradition and innovation in a new publishing format

Established in 1898 as Mitteilungen aus dem Museum für Naturkunde in Berlin, Zoologische Reihe by the Museum für Naturkunde Berlin, Zoosystematics and Evolution is one of the oldest European zoological journals. The journal joined Pensoft Publishers Open Access family earlier this year and the first issue using the benefits of the new publishing platform is now a fact.

Marking the new collaboration and combining tradition and innovation, this first issue for 2014, is now available in a novel, attractive open access, semantically enriched format, while keeping at the same time the traditional PDF and print versions.

“We are excited to welcome Zoosystematics and Evolution in Pensoft. The attractive combination between historical legacy and tradition and the advanced publishing technologies of Pensoft ensures for this authoritative journal a jump right into the future!” said the Managing Director of Pensoft Publishers, Prof. Lyubomir Penev.

Being already a member of Pensoft’s family of advanced open access journals, Zoosystematics and Evolution now benefits from the innovative “platinum “open access model. For Pensoft, “platinum” open access means not just that the articles and all associated materials are free to download and that there are no author-side fees but even more so that novel approaches are used in the dissemination and reuse of published content. This publishing model includes:

• Free to read, reuse, revise, remix, redistribute
• Easy to discover and harvest by both humans and computers
• Content automatically harvested by aggregators
• Data and narrative (text) integrated to the widest extent possible
• Community peer-review and rapid publication
• Post-publication peer-review
• Easy and efficient communication with authors and reviewers
• Active promotion and dissemination of scientists’ work in the society
• A “fremium” model assuming no author-side fees within an yearly limit of number of pages

“Making published data available online is good but not sufficient. The ultimate goal is to make the journal content more attractive for the readers and authors, so that to increase visibility and re-usability of the published information to generate new knowledge”, said Dr Matthias Glaubrecht from the Museum für Naturkunde, Editor-in-Chief of Zoosystematics and Evolution.

Dr. Gregor Hagedorn, Head of the Museum’s science division “Digital World and Information Science”, adds: “Original scientific articles and the underlying scientific data have to be published in new, connected ways if we want to be able to face the challenges to mitigate global biodiversity loss. By making this journal accessible under Open Access and by joining our efforts in developing the Museum’s digital infrastructures with the novel publishing technologies invented by Pensoft, we make a significant step towards these goals.”

“I am glad to see Zoosystematics and Evolution, originally established more than a Century ago as a journal to publish studies on Museum’s collections, now serving the great task to open the treasury of biodiversity data from these collections gathered by generations of naturalists with the strong support from society over 250 years of history of explorations!” concluded Prof. Johannes Vogel, Director General of the Museum für Naturkunde, Berlin.

Additional Information:

Museum für Naturkunde – Leibniz Institute for Research on Evolution and Biodiversity is a research museum within the Leibniz Association. It is one of the most significant research institutions worldwide in biological and geo-scientific research on evolution and biodiversity. Established in 1810, its collections comprise more than 30 million items relating to zoology, palaeontology, geology and mineralogy, which are highly significant for science as well as for the history of science and at the centre of the research performed at the Museum.

Pensoft Publishers specialize in academic and professional book and journal publishing, mostly in the field of biodiversity science and natural history. In 2008, Pensoft launched its first open-access journals named ZooKeys and BioRisk, and since then, it has taken a leadership in introducing innovations in the field of open access. On 16th of September 2013, Pensoft launched the Biodiversity Data Journal (BDJ) and the associated Pensoft Writing Tool (PWT), as the first workflow ever to put together article authoring, community peer-review, publishing and dissemination within a single online collaborative platform.

It is often difficult to decide whether two animals belong to the same or two distinct species. This can be especially challenging for animals which externally look very similar. In a recent study, published in the open access journal Zoosystematics and Evolution, scientists from the Museum für Naturkunde Berlin use genetic data and sound analysis to test if treefrogs from West and Central Africa belong to different or the same species.

Due to the fact that, when external characters are used, only size is useful to distinguish these frogs the scientists employed additional characters to determine species affiliations. One the one hand, they used genetics, and, on the other, advertisement calls of different populations. Male frogs have to attract their females via species specific calls, so call characteristics (e.g. duration, frequency) reliably tell whether animals belong to one or several species.

The two sets of populations have been previously declared as belonging to the same species based on morphological, meaning external, similarities. With their work the researchers from Berlin proved their expectations right, and revealing they were in fact working with four and not two species: two different sets of one large and one small specie, which live in West and Central Africa respectively.

In order to facilitate other researchers the verification of these results, not only genetic but also acoustic data are publicly available and the latter can be downloaded from the animal sound archive of the Museum für Naturkunde.

Species are the basis for all biological questions. Therefore, they are not only important for taxonomists but also a reference parameter for physiologists, ecologists or conservationists. Thus it is of central importance to be able to distinguish whether animals of two different populations belong to one or two distinct species. A clear showcase is an example, which was examined in a recent publication by zoologist from Berlin and Geneva.

“A colleague grouped animals to two species which were formerly known as four species, each now with a distribution across West and Central Africa. However, this contradicted known zoogeographical facts which found that forest frogs live either in West or in Central Africa but very rarely simultaneously in both regions. The clarification of that question is for example important to understand how the landscapes in these regions have developed over the past millions of years.” explains Dr. Rödel, one of the authors if the recent study.

Original Source:

Roedel M, Emmrich M, Penner J, Schmitz A, Barej M (2014) The taxonomic status of two West African Leptopelis species: L. macrotis Schiøtz, 1967 and L. spiritusnoctis Rödel, 2007 (Amphibia: Anura: Arthroleptidae). Zoosystematics and Evolution 90(1): 21-31. DOI: 10.3897/zse.90.7120

Sirenians, or sea cows, are a particular group of mammals that superficially resembles whales in having, amongst other features, a streamlined-body and horizontal tail fluke. Though belonging to the so-called marine mammals, such as whales and seals, sea cows are members of a group having a single origin that includes their closest living relatives, the proboscideans (or elephants in the broader sense).

Today, sirenians are known by only four species, but their fossil record is much more diverse documenting the transition from land-dwelling animals to fully aquatic ones. This makes fossil representatives of this group not only very fascinating, but also crucial for the understanding of the transition from life on land to the sea and the past diversity of the order Sirenia.

Considering the oldest known member of this order, Prorastomus from the Eocene (~50 Ma – Millions of years before present) of Jamaica, first fully aquatic sea cows already occurred by approximately 42 Ma, which indicates a relatively fast transitional process. Later forms still retained a small femur, which however was no more visible outside. Amongst such sirenians, one species was distributed in a shallow marine area, now occupied by Germany and Belgium, about 30 Millions of years ago in the early Oligocene. This respective species was hitherto known as Halitherium schinzii and believed to represent the only sea cow that evolved in that region to that time.

In a recent publication of the open access journal Zoosystematics and Evolution, Manja Voss from the Museum für Naturkunde Berlin deals with a contrasting hypothesis of two distinct species in the early Oligocene of Central Europe. Considering the always incomplete fossil record, palaeontologists face the challenge to determine species on a material basis being as informative as possible. In the present study Manja Voss provides arguments why this is not the case with the so-called holotype, a single tooth, of H. schinzii and explains why this species name is not applicable to any currently known sirenian.

Additionally, Manja Voss emphasises that consequences are to be drawn including a morphological re-assessment of skeletal material originally assigned to this species and the requirement of new generic names for all species formerly grouped under Halitherium. Moreover, it is acknowledged that this genus does not only include unrelated species, but is also the name giving basis for a subfamily, the Halitheriinae, that is likewise far from forming a single entity. Therefore, the proposed rejection of these specific termini shall help to better handle the known diversity of the sirenian order.

Original Source:

Voss M (2014) On the invalidity of Halitherium schinzii Kaup, 1838 (Mammalia, Sirenia), with comments on systematic consequences. Zoosystematics and Evolution 90(1): 87-93. DOI: 10.3897/zse.90.7421

Six new species of Dracula ants from the Malagasy region have been discovered by scientists at the California Academy of Sciences. The discoveries, by postdoctoral fellow Masashi Yoshimura from Japan and curator of entomology Brian L. Fisher, represent a completely new twist in the typically rigid caste system of ants, where anatomy is typically destiny. The study was published in the open access journal ZooKeys.

“The genus Mystrium is the most mysterious group within the bizarre Dracula ants.” said Yoshimura.

Mystrium species have unique features such as long, spatulate mandibles that snap together (Gronenberg et al. 1998); wingless queens that in some undetermined species are even smaller than workers (Molet et al. 2007); and large, wingless individuals intermediate between workers and queens, which behave like queens (Molet et al. 2012).

“Mystrium was a difficult group to identify because of the remarkable variation within each species.” Yoshimura said.

“Our team has explored Madagascar and its surrounding islands for 20 years and collected thousands of specimens to solve the mysteries of Mystrium.” said Fisher, an expert on Malagasy ants.

Fisher explained why Mystrium poses such a fiendish problem Mystrium to taxonomists, who identify new and different species. “Mystrium has three different styles in reproduction within a single genus, and the role of an individual in a colony is not always obvious by its appearance. Ants that look similar may be minor workers in one species but queens in another species.” This makes classifying the Dracula ants extremely difficult, he said.

“The discovery of the division of females into major and minor forms were the key to solving this complicated puzzle.” explained Yoshimura. “We found that all species in Mystrium share a common original components consisting of male, usual large queen, and major and minor workers. Furthermore, the major or minor workers develop as reproductives in some species and even take over queen’s position. They are revolutionaries finding in the anatomy-is-destiny world of ants! Taxonomists usually compare the anatomy of ants of the same caste to find differences between species. But in the case of the genus Mystrium, we need to compare individuals from the same original phenotype, not on the their current functional role (caste).” he said.

The authors have reclassified all species into three subgroups based on the reproductive styles, and developed a new taxonomic framework for this complicated group featuring innovative pictorial keys to the species. The illustrations include color photographs showing every hair in focus (produced using a computer-assisted method called auto-montage), and drawings for all castes. The paper looks more like a picture book than your average scientific treatise. “I learned drawing techniques from Japanese manga.” Yoshimura says.

“To name three of the species we chose words that evoke the air of mystery around this genus, calling them Mystrium labyrinth, Mystrium mirror, and Mystrium shadow.” Yoshimura said.

Original source:

Yoshimura M, Fisher BL (2014) A revision of the ant genus Mystrium in the Malagasy region with description of six new species and remarks on Amblyopone and Stigmatomma (Hymenoptera, Formicidae, Amblyoponinae). ZooKeys 394: 1-99. doi: 10.3897/zookeys.394.6446

 

Additional Information:

Gronenberg W, Hölldobler B, Alpert GD (1998) Jaws that snap: control of mandible movements in the ant Mystrium. J Insect Physiol 44: 241-253. doi: http://dx.doi.org/10.1016/S0022-1910(97)00145-5

Molet M, Peeters C, Fisher BL (2007) Winged queens replaced by reproductives smaller than workers in Mystrium ants. Naturwissenschaften 94: 280-287. doi: http://dx.doi.org/10.1007/s00114-006-0190-2

Molet M, Wheeler DE, Peeters C (2012) Evolution of Novel Mosaic Castes in Ants: Modularity, Phenotypic Plasticity, and Colonial Buffering. Am Nat 180: 328-341. http://www.jstor.org/stable/10.1086/667368

New species discovery, description and data sharing in less than 30 days

Researchers and the public can now have immediate access to data underlying discovery of new species of life on Earth, under a new streamlined system linking taxonomic research with open data publication.

The partnership paves the way for unlocking and preserving a wealth of ‘small data’ backing up research conclusions, which often become lost within a few years of an article’s publication in an academic journal.

In the first example of the new collaboration in action, the Biodiversity Data Journal carries a peer-reviewed description of a new species of spider discovered during a field course in Borneo just one month ago. At the same time, the data showing location of the spider’s occurrence in nature are automatically harvested by the Global Biodiversity Information Facility (GBIF), and richer data such as images and the species description are exported to the Encyclopedia of Life (EOL).

This contrasts with an average ‘shelf life’ of twenty-one years between field discovery of a new species and its formal description and naming, according to a recent study in Current Biology.

A group of scientists and students discovered the new species of spider during a field course in Borneo, supervised by Jeremy Miller and Menno Schilthuizen from the Naturalis Biodiversity Center, based in Leiden, the Netherlands. The species was described and submitted online from the field to the Biodiversity Data Journal through a satellite internet connection, along with the underlying data . The manuscript was peer-reviewed and published within two weeks of submission. On the day of publication, GBIF and EOL have harvested and included the data in their respective platforms.

The new workflow established between GBIF, EOL and Pensoft Publishers’ Biodiversity Data Journal, with the support of the Swiss NGO Plazi, automatically exports treatment and occurrence data into a Darwin Core Archive, a standard format used by GBIF and other networks to share data from many different sources. This means GBIF can extract these data on the day of the article’s publication, making them immediately available to science and the public through its portal and web services, further enriching the biodiversity data already freely accessible through the GBIF network. Similarly, the information and multimedia resources become accessible via EOL’s species pages.

One of the main purposes of the partnership is to ensure that such data remain accessible for future use in research. A recent study published in Current Biology found that 80 % of scientific data are lost in less than 10 years following their creation.

Donald Hobern, GBIF’s Executive Secretary, commented: “A great volume of extremely important information about the world’s species is effectively inaccessible, scattered across thousands of small datasets carefully curated by taxonomic researchers. I find it very exciting that this new workflow will help preserve these ‘small data’ and make them immediately available for re-use through our networks.”

“Re-use of data published on paper or in PDF format is a huge challenge in all branches of science”, said Prof. Lyubomir Penev, managing director of Pensoft and founder of the Biodiversity Data Journal. “This problem has been tackled firstly by our partners from Plazi who created a workflow to extract data from legacy literature and submit it to GBIF. The workflow currently launched by GBIF, EOL and the Biodiversity Data Journal radically shortens the way from publication of data to their sharing and re-use and makes the whole process cost efficient.”, added Prof. Penev.

The elaboration of the workflow from BDJ and Plazi to GBIF through Darwin Core Archive was supported by the EU-funded project EU BON (Building the European Biodiversity Observation Network, grant No 308454). The basic concept has been initially discussed and outlined in the course of the pro-iBiosphere project (Coordination and policy development in preparation for a European Open Biodiversity Knowledge Management System, addressing Acquisition, Curation, Synthesis, Interoperability and Dissemination, grant No 312848).

Miller J, Schilthuizen M, Burmester J, van der Graaf L, Merckx V, Jocqué M, Kessler P, Fayle T, Breeschoten T, Broeren R, Bouman R, Chua W, Feijen F, Fermont T, Groen K, Groen M, Kil N, de Laat H, Moerland M, Moncoquet C, Panjang E, Philip A, Roca-Eriksen R, Rooduijn B, van Santen M, Swakman V, Evans M, Evans L, Love K, Joscelyne S, Tober A, Wilson H, Ambu L, Goossens B (2014) Dispatch from the field: ecology of micro web-building spiders with description of a new species. Biodiversity Data Journal 2: e1076. DOI: 10.3897/BDJ.2.e1076

 

Additional information:

The Global Biodiversity Information Facility (GBIF) is an international open data infrastructure, funded by governments. It allows anyone, anywhere to access data about all types of life on Earth, shared across national boundaries via the Internet. By encouraging and helping institutions to publish data according to common standards, GBIF enables research not possible before, and informs better decisions to conserve and sustainably use the biological resources of the planet.

The Encyclopedia of Life (EOL) operates as an ongoing collaboration among its international partners with the mission to raise awareness and understanding of living nature. With additional support from a global network of content partners, curators and users, EOL works to provide free, open, multilingual, digital access to trusted information on all known species.

Pensoft Publishers specialize in academic and professional book and journal publishing, mostly in the field of biodiversity science and natural history. On 16th of September 2013, Pensoft launched the Biodiversity Data Journal (BDJ) and the associated Pensoft Writing Tool (PWT), as the first workflow ever to put together article authoring, community peer-review, publishing and dissemination within a single online collaborative platform.

Plazi GmbH is a service SME owned by the Swiss based not for profit Plazi Verein, supporting and promoting the development of persistent and openly accessible digital taxonomic literature. Plazi GmbH has been founded to provide services, training and consulting in the domain of digitization, open access publishing and access to taxonomy related published content.

 

Contacts:

Tim Hirsch
Global Biodiversity Information Facility (GBIF)
Email: thirsch@gbif.org
Tel.: +45 28751485

Jeremy Miller
Naturalis Biodiversity Center
Email: jeremy.miller@naturalis.nl

Lyubomir Penev
Pensoft Publishers
Email: penev@pensoft.net