Phylogenetics

Scientists discover White-handed gibbons that have been evolving in the south of Malaysia

Genetic assessment of captive gibbons to identify their species and subspecies is an important step before any conservation actions. A group of wildlife researchers recently discovered a previously unknown population of white-handed gibbons (subspecies lar) from Peninsular Malaysia. Their findings are now published in the open-access journal ZooKeys. Betsy and Lola are among the captive white-handed gibbons undergoing a strict rehabilitation process before being released back to the wild.

Many captive gibbons kept in zoos and rescue centres have been seized from illegal pet trade, private collectors, and plantations where their natural habitats are getting destroyed.

In 2013, the National Wildlife Rescue Centre (NWRC) of the Department of Wildlife and National Parks (PERHILITAN) was established in Peninsular Malaysia to help with the rehabilitation of wildlife species – including gibbons – before they are reintroduced or translocated back to the wild. Under the Primate Rehabilitation Programme initiated by PERHILITAN, captive gibbons have to go through a number of procedures and assessments, where their taxonomy and genetics might be examined, before they can go back to living in the wild.

Members of the research team at National Wildlife Forensic Laboratory of DWNP. Photo by PERHILITAN

Following the Guidelines for Reintroductions and Other Conservation Translocations provided by the IUCN Species Survival Commission, researchers Dr Jeffrine J. Rovie-Ryan from Universiti Malaysia Sarawak and Millawati Gani and colleagues from the National Wildlife Forensic Laboratory of PERHILITAN conducted a genetic assessment on 12 captive white-handed gibbons in NWRC. Determining the subspecies and origin of the animals is an important step that informs further decisions on their translocation and reintroduction.

In a research paper published in the open-access journal ZooKeys, the team describes a previously unknown southern population of the white-handed gibbon subspecies lar living in Peninsular Malaysia. In what started as a straightforward species and subspecies identification process using DNA technology, the researchers discovered unusual mutations in the DNA of the studied gibbons. This is how the researchers found themselves before a distinct population, which they concluded must have been evolving in isolation.

Lola (left) and Betsy (right), two of the White-handed gibbons of the Hylobates lar lar subspecies undergoing rehabilitation process at Pulau Ungka, NWRC. Photo by Hani Nabilia and PERHILITAN

“Given the prolonged isolation, it is likely that the southern population has undergone some local speciation, but this finding should be regarded as preliminary and requires further investigation,” explained Dr Jeffrine. Furthermore, the researchers suggest there might be a northern population inhabiting Southern Thailand.

Still going through rehabilitation, the gibbons from the study have been pre-released into a semi-wild enclosure known as Pulau Ungka (Gibbon Island), where their recovery is closely monitored by primate experts of PERHILITAN.

Research article:

Gani M, Rovie-Ryan JJ, Sitam FT, Mohd Kulaimi, NA, Zheng, CC, Atiqah AN, Abd Rahim, NM, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programme. ZooKeys 1076: 25–41 (2021), doi: 10.3897/zookeys.1076.73262

Scientists unravel the evolution and relationships for all European butterflies in a first

For the first time, a complete time-calibrated phylogeny for a large group of invertebrates is published for an entire continent. A German-Swedish team of scientists provide a diagrammatic hypothesis of the relationships and evolutionary history for all 496 European species of butterflies currently in existence. Their study provides an important tool for evolutionary and ecological research, meant for the use of insect and ecosystem conservation.

For the first time, a complete time-calibrated phylogeny for a large group of invertebrates is published for an entire continent.

The figure shows the relationships of the 496 extant European butterfly species in the course of their evolution during the last 100 million years.
*Image by Dr Martin Wiemers*

In a recent research paper in the open-access, peer-reviewed academic journal ZooKeys, a German-Swedish team of scientists provide a diagrammatic hypothesis of the relationships and evolutionary history for all 496 European species of butterflies currently in existence. Their study provides an important tool for evolutionary and ecological research, meant for the use of insect and ecosystem conservation.

In order to analyse the ancestral relationships and history of evolutionary divergence of all European butterflies currently inhabiting the Old continent, the team led by Martin Wiemers – affiliated with both the Senckenberg German Entomological Institute and the Helmholtz Centre for Environmental Research – UFZ, mainly used molecular data from already published sources available from NCBI GenBank, but also contributed many new sequences, some from very local endemics for which no molecular data had previously been available.

The phylogenetic tree also includes butterfly species that have only recently been discovered using molecular methods. An example is this Blue (*Polyommatus celina*), which looks similar to the Common Blue. It used to be mistaken for the Common Blue in the Canary Islands and the southwestern part of the Mediterranean Region.
*Photo by Dr Martin Wiemers*

Butterflies, the spectacular members of the superfamily Papilionoidea, are seen as an important proponent for nature conservation, as they present an excellent indicator group of species, meaning they are capable of inferring the environmental conditions of a particular habitat. All in all, if the local populations of butterflies are thriving, so is their habitat.

Furthermore, butterflies are pollinating insects, which are of particular importance for the survival of humans. There is no doubt they have every right to be recognised as a flagship invertebrate group for conservation.

While many European butterflies are seriously threatened, this one: Madeiran Large White (Pieris wollastoni) is already extinct. The study includes the first sequence of this Madeiran endemic which was recorded in 1986 for the last time. The tree demonstrates that it was closely related to the Canary Island Large White (Pieris cheiranthi), another threatened endemic butterfly, which survives only on Tenerife and La Palma, but is already extinct on La Gomera.
Photo by Dr Martin Wiemers

In recent times, there has been a steady increase in the molecular data available for research, however, those would have been only used for studies restricted either to a selected subset of species, or to small geographic areas. Even though a complete phylogeny of European butterflies was published in 2019, also co-authored by Wiemers, it was not based on a global backbone phylogeny and, therefore, was also not time-calibrated.

In their paper, Wiemers and his team point out that phylogenies are increasingly used across diverse areas of macroecological research, such as studies on large-scale diversity patterns, disentangling historical and contemporary processes, latitudinal diversity gradients or improving species-area relationships. Therefore, this new phylogeny is supposed to help advance further similar ecological research.

The study includes molecular data from 18 localised endemics with no public DNA sequences previously available, such as the Canary Grayling (Hipparchia wyssii), which is only found on the island of Tenerife (Spain).
Photo by Dr Martin Wiemers

Original source:

Wiemers M, Chazot N, Wheat CW, Schweiger O, Wahlberg N (2020) A complete time-calibrated multi-gene phylogeny of the European butterflies. ZooKeys 938: 97-124. https://doi.org/10.3897/zookeys.938.50878

Life in the fast flow: Tadpoles of new species rely on ‘suction cups’ to keep up

The frogs living in the rainforest of Sumatra also represent a new genus

Indonesia, a megadiverse country spanning over 17,000 islands located between Australia and mainland Asia, is home to more than 16% of the world’s known amphibian and reptile species, with almost half of the amphibians found nowhere else in the world. Unsurprisingly, biodiversity scientists have been feverishly discovering and describing fascinating new animals from the exotic island in recent years.

Such is the case of an international team from the University of Hamburg, Germany, University of Texas at Arlington, USA, University of Bern, Switzerland and Bandung Institute of Technology, Indonesia, who came across a curious tadpole while collecting amphibian larvae from fast-flowing streams as part of an arduous expedition in the remote forests on the island of Sumatra.

To the amazement of the scientists, it turned out that the tadpoles possess a peculiar cup-like structure on their bellies, in addition to the regular oral disk found in typical tadpoles. As a result, the team described two new species and a genus in the open access journal Zoosystematics and Evolution. A previously known, but misplaced in an unsuitable genus, frog was also added to the group, after it was proved that it takes advantage of the same modification.

“This phenomenon where tadpoles display ‘belly suckers’ is known as gastromyzophory and, albeit not unheard of, is a rare adaptation that is only found in certain toads in the Americas and frogs in Asia,” explains lead author Umilaela Arifin.

The abdominal sucker, it is hypothesized, helps these tadpoles to exploit a very special niche – fast-flowing streams – where the water would otherwise be too turbulent and rapid to hang around. Gastromyzophorous species, however, rely on the suction provided by their modified bellies to secure an exclusive access to plentiful food, such as algae, while the less adapted are simply washed away.

When the scientists took a closer look at the peculiar tadpoles and their adult forms, using a powerful combination of molecular and morphological data, they realized that they had not only stumbled upon a rare amphibian trait, but had also discovered two brand new species of frogs in the process.

Moreover, the animals turned out so distinct in their evolutionary makeup, compared to all other frogs, that the scientists had to create a whole new genus to accommodate them. Formally named Sumaterana, the genus is to be commonly referred to as Sumatran Cascade Frogs.

“We decided to call the new genus Sumaterana after Sumatra, to reflect the fact that these new species, with their rare evolutionary adaptation are endemic to Sumatra’s rainforests and, in a sense, are emblematic of the exceptional diversity of animals and plants on the island,” says co-author Dr. Utpal Smart. “Tragically, all of them are in peril today, given the current rate of deforestation.“

The authors agree that much more taxonomic work is still needed to determine and describe Sumatra’s herpetofaunal diversity, some of which they fear, could be irreversibly lost well before biologists have the chance to discover it.

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Original source:

Arifin U, Smart U, Hertwig ST, Smith EN, Iskandar DT, Haas A (2018) Molecular phylogenetic analysis of a taxonomically unstable ranid from Sumatra, Indonesia, reveals a new genus with gastromyzophorous tadpoles and two new species. Zoosystematics and Evolution 94(1): 163-193. https://doi.org/10.3897/zse.94.22120

A hair’s breadth away: New tarantula species and genus honors Gabriel García Márquez

With its extraordinary defensive hairs, a Colombian tarantula proved itself as not only a new species, but also a new genus. It is hypothesised that the new spider is the first in its subfamily to use its stinging hairs in direct attack instead of ‘kicking’ them into the enemy.

Described in the open access journal ZooKeys by an international research team, led by Carlos Perafán, University of the Republic, Uruguay, the name of the new spider genus honours an indigenous people from the Caribbean coast region, whose language and culture are, unfortunately, at serious risk of extinction. Meanwhile, its species’ name pays tribute to renowned Colombian author and Nobel laureate for his novel ‘One Hundred Years of Solitude’ Gabriel García Márquez.

The new tarantula, formally called Kankuamo marquezi, was discovered in Sierra Nevada de Santa Marta, Colombia. When examined, the arachnid showed something extraordinary about its defensive hairs and its genitalia. The hairs were noted to form a small oval patch of lance-shaped barbs, hypothesised by the scientists to have evolved to defend their owners by direct contact.

On the other hand, when defending against their aggressors, the rest of the tarantulas in this subfamily need to first face the offender and then vigorously rub their hind legs against their stomachs. Aimed and shot at the enemy, a ball of stinging hairs can cause fatal injuries to small mammals when landed into their mucous membrane (the layer that covers the cavities and shrouds the internal organs in the body). Once thrown, the hairs leave a bald spot on the tarantula’s belly.

“This new finding is a great contribution to the knowledge of the arachnids in Colombia and a sign of how much remains to be discovered,” point out he authors.

“The morphological characteristics present on Kankuamo marquezi open the discussion about the phylogenetics relationship between subfamilies of Theraphosidae tarantulas and the evolutionary pressures that gave rise to the urticating hairs.”

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Original source:

Perafán C, Galvis W, Gutiérrez M, Pérez-Miles F (2016) Kankuamo, a new theraphosid genus from Colombia (Araneae, Mygalomorphae), with a new type of urticating setae and divergent male genitalia. ZooKeys 601: 89-109. doi: 10.3897/zookeys.601.7704

Known from flower stalls as ‘Big Pink’ orchid proved to be an undescribed wild species

As easy as it might seem, seeking new species among cultivated plants could be actually quite tricky. While looking into the undescribed orchid, known at the market as ‘Big Pink’, Bobby Sulistyo and his team were likely to find yet another man-made hybrid. In reality, they are now describing as ‘new’ a wild orchid species that has been sitting at the flower stalls since 2013. The story behind their discovery is published in the open access journal PhytoKeys.

While studying a cultivated plant might be quite a motivator and serve as a starting point for scientific quests around the world, the assumptions that one has found a new species at the florist’s could easily be wrong. Not only is the place of origin, written on the label, often doubtful, but there is always the chance of accidentally describing a man-made hybrid as a new species.

Such could have been the case of Bobby Sulistyo and his team when they discovered that although previously assumed impossible, the relatives of ‘Big Pink’, they were surveying, could also make human-assisted hybrids. Moreover, both of the specimens they have had at hand had come from uncertain place of origin.

However, the scientists conducted a series of sophisticated DNA analyses to conclude that firstly, ‘Big Pink’ is a separate species within its genus and then, that there is no evidence for it being an artificial hybrid. Eventually, the species was found in the wild as well. As a result, the orchid species was given the official name Dendrochilum hampelii.

In the wild, ‘Big Pink’ is found at around 1,200 m above sea level in the Philippines, where it harmlessly plants its roots on tree trunks and branches among mosses.

So far, little is known about the orchid’s distribution in nature, so the researchers suggest its conservation status to be considered as Data Deficient according to the IUCN Red List of Threatened Species (IUCN 2012).

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Original source:

Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as ‘Big Pink’ is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. doi:10.3897/phytokeys.56.5432