Pensoft blog - Part 11

The Evolutionary Adaptations of Cave-Dwelling Catfish in Brazil

What do brain morphology and sensory structures tell us about the evolutionary adaptations between catfish that live on the surface and those that live in caves?

Cave fauna fascinates young and old alike. Deep within the karst systems of Chapada Diamantina, Brazil, lives one of the world’s most diverse groups of cave-dwelling fish.

In fact, Brazilian cavefishes are the richest troglobitic (cave-dwelling) ichthyofauna worldwide, boasting 13 different genera. While the surface world is teeming with life, the subterranean realm, or the hypogean habitat, demands a very specific set of skills to survive.

The research, conducted by Thalia Rodovanski (from the Departamento de Biologia, Universidade Federal de São Carlos, Brazil) and her team, was published in Subterranean Biology and took a closer look at the Copionodontinae, a subfamily of primitive catfishes.

Shallow water pool in Igatu. Photo credit to Maria Elina Bichuette.

Building on previous findings regarding the aggressive (agonistic) nature of Copionodontinae species, the researchers used this behavioral foundation to investigate how their physical and sensory structures have evolved in response to their environment.

By comparing surface-dwelling (epigean) species such as Copionodon pecten, C. lianae, and G. rodriguesi with their cave-bound cousin, Glaphyropoma spinosum, the researchers undertook the task of uncovering how these fish transitioned from the sunlit rivers to the pitch-black cave riverine systems.

Specifically, they did this by measuring the brain morphology and sensory structures such as barbels, eyes and counted pores of the lateral canal system on the head.

Shallow water pools in Igatu. Photo credit to Maria Elina Bichuette.
Researcher in a cave system in Igatu. Photo credit to Maria Elina Bichuette.

The curious findings

One of the most striking finds involved the genus Glaphyropoma. While the cave-dwelling G. spinosum shows classic troglomorphisms (adaptations for life in constant darkness), such as reduced eyes and a loss of skin pigment, the researchers found something surprising: even the surface-dwelling species in this group showed eye asymmetry and reduction.

*Copionodon pecten*. Photo credit to Maria Elina Bichuette.

Based on this, the researchers hypothesized that the asymmetry in the eyes is a plesiomorphic character (an ancestral trait) of the genus, rather than a feature developed in response to the specific habitat of each species. This pre-existing condition likely favored the colonization of hypogean (underground) habitats by G. spinosum.

In other words, Glaphyropoma already had a tendency toward reduced eyes. Instead of evolving small eyes because of the cave environment, they likely had them from the start. This is known as exaptation: a trait that originally evolved for one function (or no function at all) and was later co-opted for a new, different purpose, in this case, better suited for the dark.

*Glaphyropoma spinosum*. Photo credit to Adriano Gambarini.

As you can imagine, seeing in pitch black is quite hard. Therefore, these species had to rely on their other senses. The study found that the cave-dwelling G. spinosum has a longer telencephalon than its relatives. This is significant because it is the part of the brain responsible for navigating through chemical cues, creating mental maps (spatial memory), and participating in social interactions. Interestingly, the mesencephalon (the vision-processing center) hasn’t shrunk significantly yet, suggesting that these fish are still in the middle of their evolutionary transition.

The researchers concluded that while G. spinosum shows clear cave-specialized traits, many of these features are shared by its surface-dwelling cousins.

However, because of a lack of specimens of G. rodriguesi, the only known epigean species of the genus, which occurs sporadically in caves, it is not yet possible to definitively conclude if the sensory troglomorphisms detected in this study are related to taxonomic identity or the habitat itself.

Ultimately, such research is key to understanding more about the complex life of the highly specialized species that inhabit these fascinating environments.

Original source:

Rodovanski T, Bichuette ME, Cetra M, Mattox GMT (2026) The influence of subterranean habitats in the sensorial and brain morphology of hypogean and epigean Copionodontinae catfish (Siluriformes, Trichomycteridae). Subterranean Biology 55: 27-42. https://doi.org/10.3897/subtbiol.55.175751

A New Species of Fly Found on the Lesser Brown Horseshoe Bat

A bizarre new species of parasitic fly sheds its wings and legs to live permanently embedded in a bat’s ear.

Imagine a fly that decides flying is overrated. Instead, it finds a bat, sheds its wings, drops its legs, and burrows into the host’s skin for the rest of its days. This is the reality of the genus Ascodipteron, a group of highly specialised bat flies that challenge our basic definition of what an insect looks like.

In a recent study published in the open-access journal ZooKeys, researchers led by Haoran Sun of Beijing Forestry University have identified a new member of this strange family in the Yunnan Province of China. It brings some fascinating, if slightly macabre, biological quirks to the table.

The newly discovered species has been named Ascodipteron euryale and was found on the lesser brown horseshoe bat, known scientifically as Rhinolophus stheno. This discovery is particularly significant because it represents the first time a fly from this genus has been documented on this specific species of bat. These flies often show an incredibly narrow host range and a strict preference for where they live on the bat’s body. In the case of Ascodipteron euryale, they prefer the base of the bat’s ear, the tragus, or the ear pinna.

*Ascodipteron* *euryale* sp. nov. and its host *Rhinolophus* *stheno*. (Image credit: Haoran Sun et al.).

The life of a female Ascodipteron fly is especially interesting. After a very brief period of seeking out a host, the female undergoes a radical transformation into what scientists call a neosome. It essentially becomes an endoparasite, embedded so deeply in the bat’s tissue that often only its posterior end is visible, protruding slightly so it can breathe and release larvae. This particular species was discovered in Xianren Cave, located in the Simao District of Pu’er City, at an elevation of 2428 meters above sea level.

*Ascodipteron* *euryale* sp. nov., ex. R. *stheno* – the top two images display the whole neosome. (Image credit: Haoran Sun et al.).

What makes Ascodipteron euryale stand out from its 17 known cousins? The most defining physical trait is the shape of its mesosternum, a part of its underside, which features gently rounded lobes on the back corners. Further, unlike many related flies that are covered in soft skin and easily removed, these neosomes were found encased in a fibrous cyst or shell – this is a reaction from the host bat’s own immune system, creating a protective barrier that makes the parasite very difficult to extract.

*Ascodipteron* *euryale* sp. nov., ex. R. *stheno*, head and thorax. (Image credit: Haoran Sun et al.).

The naming of the species is a clever nod to Greek mythology. The host bat, Rhinolophus stheno, shares a name with Stheno, one of the three Gorgon sisters who could turn onlookers to stone. The researchers decided to name the new fly euryale after Euryale, another of the Gorgon sisters. In the myths, these two sisters were immortal, and the authors note that this name choice reflects their hope that the deep-rooted biological association between this specific bat and its resident fly continues long into the future.

This research adds a sixth species of Ascodipteron to the records in China, emphasising the impressive biodiversity hidden within the country’s cave systems. It also raises new questions for future study, particularly regarding why some of these flies trigger the formation of fibrous shells while others do not. For now, Ascodipteron euryale remains a testament to the strange and highly specific ways life finds a niche (even if that niche is the inside of a bat’s ear)!

Original source:

Sun H, Ding L, Zhang D, Pape T (2026) Ascodipteron (Diptera, Nycteribiidae, streblid grade) from China: a new species from the lesser brown horseshoe bat, Rhinolophus stheno. ZooKeys 1273: 277-286. https://doi.org/10.3897/zookeys.1273.183551

New Way of Conservation: An Acoustic Device Helps Reduce Bycatch of Endangered Black Sea Porpoises

A new study published in Nature Conservation shows that not all acoustic deterrent devices may be effective in protecting the Black Sea porpoise, Europe’s smallest marine mammal.

Guest blog post by Dr. Dimitar Popov

The endangered Black Sea harbour porpoise (Phocoena phocoena relicta) is facing a critical fight for survival. As Europe’s smallest marine mammal, this isolated population is being pushed toward extinction by bycatch – the unintentional entanglement in fishing gear. The crisis is most acute in the Black Sea turbot fishery, where recent estimates reveal that more than 10,000 porpoises die annually.

Led by a strong motivation to address threats to this iconic species, a team of Bulgarian researchers has carried out a four-year trial study of 57 hauls seeking effective solutions to reduce porpoise mortality. The study, now published in Nature Conservation, found bycatch in 61% of all hauls, accounting for 189 cetaceans: 182 harbour porpoises, five bottlenose dolphins, and two common dolphins.

Bycaught Black Sea harbour porpoises. Photo credit to Dimitar Popov.

The trials did not begin promisingly, as the first two models of acoustic deterrent devices (pingers) tested, proved ineffective at reducing bycatch.
the researchers noted

This initial setback prompted the team to search for an alternative solution, eventually leading to a breakthrough with the PAL Wideband pinger, an acoustic deterrent device developed in Germany.

PAL Wideband pinger attached to a fishing net. Photo credit to Dimitar Popov.

Field trials demonstrated that this device can reduce harbour porpoise bycatch in the Black Sea by approximately 74%. Researchers believe the specific acoustic signals, namely the wider frequency band (between 10 and 150 kHz) emitted by the PAL Wideband model, contributed to its effectiveness, as it was the only one of the three pingers tested, that successfully deterred porpoises from approaching fishing nets.

Map of the conducted trials involving PAL Wideband pingers in 2020 and 2021. Credit to Popov et al., 2026

“Other recent studies have highlighted significant shortcomings in the conservation of harbour porpoise populations in European waters,” the researchers stated. This underscores the urgent need for effective strategies to reduce bycatch, the leading human-induced cause of mortality for the species.

Mitigation measures could include spatio-temporal closures of high-risk fisheries in areas where harbour porpoises are most abundant, as well as the adoption of alternative or modified fishing gear, including the use of acoustic deterrent devices.
the experts noted

black sea harbour porpoise in a net — Bycaught Black Sea harbour porpoise. Photo credit to Dimitar Popov.

Among the available options, the use of effective pingers, supported by appropriate financing mechanisms, is increasingly seen as one of the most practical and widely accepted approaches to reducing bycatch while maintaining profitable fishing operations.

Not all acoustic deterrent devices are equally effective in reducing the bycatch of the harbour porpoise in the Black Sea.
the researchers concluded

Their findings demonstrate that certain pinger models fail to mitigate porpoise bycatch in the bottom-set gillnets specifically used to target turbot.

The study underscores the importance of careful selection and testing of deterrent devices and emphasizes that this distinction must be explicitly taken into account in the development of targeted and effective strategies to reduce bycatch in Black Sea fisheries.

If you are interested in other marine research from Bulgaria, take a look at the topical collection “Black Sea ecosystem in the spotlight” which includes this study.

Original source:

Popov D, Meshkova G, Dimitrov H, Panayotova M (2026) Can pingers mitigate the bycatch of the endangered Black Sea Harbour Porpoise? Nature Conservation 63: 1-15. https://doi.org/10.3897/natureconservation.63.183768

Inside the Hidden World of Spider-Attacking Fungi

Newly discovered groups of “zombie” fungi have been found to mummify spiders and adapt their physical forms.

Deep within the humid leaf litter of China and the dense canopies of Brazil’s Atlantic Forest, a silent ambush unfolds.

While we often think of spiders as the ultimate predators of the undergrowth, they have an arch-nemesis: araneopathogenic fungi. These “zombie” fungi are capable of parasitising spiders by hijacking their bodies and consuming them from the inside out.

Two studies published in the open-access peer-reviewed scientific journals MycoKeys and IMA Fungus, respectively, offer insight into this macabre world of spider assassins.

In Southeast Asia, researchers led by Chen-xin Chang of the Guizhou University of Traditional Chinese Medicine have identified three new species of Gibellula fungi in China and Laos, which erupt from spiders in branch-like structures: Gibellula pseudopigmentosa, Gibellula pseudosolita, and Gibellula sinensis. These species are distinguished from one another by their slight variations in sexual reproductive structures and morphology. The below figure displays morphological plates, showing the three fungi species at both a macroscopic and microscopic level – notice their unique conidial heads and spore arrangements, coloured in blue.

Morphologies of Gibellula pseudopigmentosa, Gibellula pseudopigmentosa, Gibellula pseudosolita, and Gibellula sinensis. Photo credit: Chang et al.

To identify new species of spider-pathogenic fungi, the research group conducted field surveys in the forest leaf of China and Laos, where they collected specimens for detailed laboratory study. A combination of traditional microscopy and modern DNA sequencing rendered the discovery possible. The fungi’s sighting in Laos is particularly significant because it provides the first formal record of the Gibellula genus in the region.

This study – published in MycoKeys – therefore serves to fill a major distributional gap in Southeast Asia, as well as expand our understanding of the morphological diversity within this group of spider-pathogenic fungi.

Meanwhile, in Brazil, a study led by Joao Paulo Machado De Araújo of the University of Copenhagen and the Royal Botanic Gardens of Kew, published in IMA Fungus, described a new species of Purpureocillium fungus belonging to the Purpureocillium atypicola group: Purpureocillium atlanticum. This fungus specifically targets trapdoor spiders inhabiting burrows on the forest floor, where it mummifies the host in white mycelia and subsequently emerges from its cephalothorax in the form of a purple fruiting body.

The discovery was notably featured in The Guardian, where it was placed alongside other unusual botanical and fungal discoveries compiled by the Royal Botanic Gardens, Kew.

Phylogeny of hypocrealean fungi (A), highlighting the *Purpureocillium atypicola* complex (B) and morphology of the new species, *P. atlanticum* (C–G). Photo credit: Araújo et al.

Purpureocillium atypicola was originally recorded in Japan by Yasuda (1894), and was thought to be a single species found all over the world for over a century. The discovery of the Purpureocillium atlanticum in Brazil is significant because it finally confirms that Purpureocillium atypicola is actually a global complex of many unique species.

To identify this new fungus, De Araújo’s research group used taxogenomics, a method which entailed bringing portable DNA sequencing gear directly into the Brazilian rainforest. By analysing the genetic code of the fungus and its environment immediately in the field, they were able to identify the specimen within just four days as opposed to waiting months for traditional lab results.

Both of these studies highlight the impressive diversity of spider-pathogenic fungi across distinct global environments. They additionally reveal the different evolutionary strategies of their respective species – while Purpureocillium atlanticum has adapted to infect underground trapdoor spiders by producing purple stalks to escape burrows, the Gibellula species represent the most diverse genus of spider parasites, found primarily in forest debris.

As researchers continue to map these complex ecological networks, it becomes clear that preserving threatened biomes, including the Atlantic Forest and the jungles of Southeast Asia, is critical to expanding our knowledge in fungal taxonomy.

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Original studies:

Araújo JPM, Przelomska NAS, Smith RJ, Drechsler-Santos ER, Alves-Silva G, Martins-Cunha K, Hosoya T, Luangsa-ard JJ, Perrigo A, Repullés M, Matos-Maraví P, Woods R, Pérez-Escobar OA, Antonelli A (2025) A new species of Purpureocillium (Ophiocordycipitaceae) fungus parasitizing trapdoor spiders in Brazil’s Atlantic Forest and its associated microbiome revealed through in situ “taxogenomics”. IMA Fungus 16: e168534. https://doi.org/10.3897/imafungus.16.168534

Chang C-xin, Chen H, Loinheuang C, Dai Y-dong, Wang Y (2026) Morphological and phylogenetic analyses reveal three new species of Gibellula (Cordycipitaceae, Hypocreales) from spiders. MycoKeys 127: 135-154. https://doi.org/10.3897/mycokeys.127.177871

To stay up-to-date with new studies made openly available from the MycoKeys and IMA Fungus journal, subscribe to their journal newsletters via Email Alert on their journal websites, and don’t forget to follow them on social media!

A Philosopher’s Serpent: New Grass-Green Pitviper Discovered in China’s Giant Panda National Park

The species name honours the philosopher known as Laozi, whose teachings emphasise the balance between humanity and the natural world.

The misty forests of the Giant Panda National Park in western Sichuan have long been a focus for biodiversity conservation. While the park is synonymous with its namesake bear, recent research has highlighted a different kind of resident. A team of scientists from the Chengdu Institute of Biology and other regional institutions recently identified a new species of pitviper that had been overlooked for decades. The results are published in the open-access journal Zoosystematics and Evolution.

*Trimeresurus* *lii* in life. (Image credit: Bo Cai).

Named Trimeresurus lii, or the Huaxi Green Pitviper, the snake was previously confused with the more common bamboo pitviper. Through a combination of genetic sequencing and detailed physical analysis, researchers determined that these populations represent a distinct lineage. The species name honours Li Er, the philosopher known as Laozi, whose teachings emphasise the balance between humanity and the natural world.

Fresh specimen of the holotype of *Trimeresurus lii*. (Image credit: Bo Cai).

Visually, the Huaxi Green Pitviper is defined by its vibrant grass-green body and distinct eye colors that range from amber to orange-yellow. There are clear physical differences between the sexes. Males feature a tricolor stripe of red and white along their sides, while females possess a simpler yellow stripe. One of the technical features that helped researchers distinguish this snake from its relatives is its smooth head scales, a trait not found in similar species within the region.

Habitat of *Trimeresurus lii*. (Image credit: Bo Cai).

The discovery took place in the West China Rain Zone, specifically around Mt. Emei and Xiling Snow Mountain. This area is a known biodiversity hotspot, yet many of its smaller or less charismatic species remain understudied. The identification of Trimeresurus lii as the 58th species in its genus serves as a reminder that even well-documented regions still hold biological secrets.

Map showing the type localities of *Trimeresurus* species and the localities of *Trimeresurus lii*. (Image credit: Cai et al.).

This find underscores the broader value of the Giant Panda National Park. By protecting large swaths of habitat for flagship species, the park inadvertently preserves a complex ecosystem of specialised reptiles and amphibians. Documenting these animals is a necessary step toward understanding the full scope of life within China’s protected wilderness.

Original source:

Cai B, Gou Y, Wang G, Liu F, Liang D, Gu X, Gu H, Fang H, Liu Y, Li Q, Ding L (2026) A new species of the genus Trimeresurus Lacépède, 1804 (Squamata, Viperidae) from western Sichuan Province, China. Zoosystematics and Evolution 102(1): 285-302. https://doi.org/10.3897/zse.102.178601

Check out the Zoosystematics and Evolution website and follow the journal on BlueSky and Facebook.

The Emerald Forest: The middle Magdalena river Valley in Colombia, a biodiversity treasure hidden until recently

Lowland tropical rainforests, especially in South America, harbour the world’s most diverse flora – including a wide array of neotropical trees.

Guest Blog Post by M. Alejandra Jaramillo

The Mountains

In May 2022, we went on our first expedition to Serranía de Las Quinchas. To reach the Serranía, we turned west in the municipality of Chiquinquirá (known by its beautiful Cathedral, dated 1796), Boyacá department.

Little by little, we left behind the farmland and paved roads, reaching the deep green forest patches a few miles after the town of Otanche (one of the main sites of Emerald commerce).

Serranía de las Quinchas, a well-conserved forest in the middle of emerald production. Photo by Juan Pablo Alarcón.

Leydi Galvis and her parents, Don Lucindo y Doña Edilsa, greeted us with kind smiles and hot coffee, and we subsequently set up the camp to prepare for the next day’s expedition. We spent three days walking up and down the slopes, finding beautiful plants wherever we looked.

Accompanying our group of students from Universidad Militar was Dayro Rodriguez, a young botanist with an incredible eye for plants and a perceptive photographer. It was like visiting the Chocó Region – very humid, green, and diverse!

In our first expedition, we collected most of our plants, including a new species of peltate leaves belong to pepper family (Piperaceae); “caipe” (Orphanodendron gradiflorum C. Cast. & G.P. Lewis), and Romeroa verticillata Dugand.

Interestingly, our Piper quinchasense M. A. Jaram., has now been spotted in several localities in the middle Magdalena Valley. The enigmatic legume Orphanodendron, meanwhile, derives its generic name from its classification within a subfamily of the Fabaceae. However, “caipe” is a locally common tree used for timber.

Romeroa, on the other hand, is a monospecific genus of trees in the Bignoniaceae with unifoliolate leaves. It is a Colombian endemic taxon, known exclusively in wet forests, such as the Las Quinchas region, located in the Boyacá, Cundinamarca, and Santander departments. The genus has been collected only a few times after its description 70 years ago.

Thus, the flora at Las Quinchas is an exciting combination of species with affinities to the Andes, Chocó Region, and the North West Amazon, with many endemics that make the area a deep, green paradise.

Left, flower of “caipe”, *Orphanodendron grandiflorum* (Leguminosae). On the right, *Romeroa verticillata* (Bignoniaceae). Photos by Dayro Rodriguez.

Subsequent expeditions to the site have consistently yielded discoveries of new and rare plant species. These efforts are supported by a close collaboration with Gerardo Aymard, an expert botanist whose unrivaled ability to review collections and identify new taxa is essential to our work.

Gerardo’s botanical expertise has allowed him to identify two new species to science: Grias lucindoae Aymard & M. A. Jaram. (Lecythidaceae) and Schlegelia longirachis Aymard & M. A. Jaram. (Schlegeliaceae). Both rare genera are often missed by collectors or remain untouched in Herbaria.

Sarcaulus paujuliensis M. A. Jaram & T. D. Penn. Photo by Andres Majin-Ladino.

The Lowlands

In 2024, we had the opportunity to visit the lowlands in the same region. A team of faculty and students from Universidad Militar Nueva Granada visited Reserva “El Paujil”.

Lizette Sierra, Paula Lara, and Luisa Suarez came across a tree species with a unique flower that, no doubt, turned out to be a new taxon. Again, by the joint efforts of the young and inquisitive Andres F. Majin-Ladino, and the expert eye of Gerardo Aymard, we decided it was a rare Sapotaceae – this is one of those families for which indeterminate specimens pile up in herbaria around the world, as botanists just do not find flowers or the courage to identify species.

We consulted the world expert in Sapotaceae, Terrance D. Pennington (The Royal Botanical Gardens, Kew), who was puzzled by the flowers he did not recall. Andres F. Majin-Ladino, with support from Fundación Proaves, visited the locality several times to collect additional samples. We conducted molecular sequence analyses, and the four of us henceforth described a new species of Sarcaulus, S. paujilensis M. A. Jaram. & T. D. Penn, now published in the open-access journal PhytoKeys.

Local naturalist Lucindo Galvis with botanist M. Alejandra Jaramillo. Photo by Juan Pablo
Alarcón.

The Bigger Picture

It is noteworthy that the Serranía de las Quinchas is at the heart of Emerald’s business in Colombia. Mining has been the fundamental activity in the region for very long time, not only of emeralds but also coal. We ought to thank the locals for conserving the remaining beautiful forests. More exploration is needed in the region to uncover its diversity, and efforts should be made to provide alternative economic activities for the community if we want to curb deforestation.

Currently, Las Quinchas region represents a complex and fragile spot of biodiversity that remains largely uncharted, even after centuries of exploration. Humans have long modified the environment and examples of overexploitation and associated species eradication are well-documented.

Forest ecosystems, such as the Magdalena River valley, are the most important global repository of terrestrial biodiversity, with more than half of tree species at risk of extinction. Quantifying the current global forest biodiversity is therefore an essential step towards mitigating global biodiversity loss and restoring biodiversity in severely affected areas.

Tree species diversity underpins forest ecosystem functionality and services, as well as the diversity of assemblages of flora, fauna, and microbes. Therefore, characterising and describing tree species diversity (i.e., Sarcaulus paujilensis), as well as its spatial patterns, is also crucial for safeguarding global ecosystem functioning, food, water, energy security, and our well-being.

*Sarcaulus* *paujilensis*. A. Flowering branch; B. Seed; C. Fruiting branch; D. Immature fruit; E. Mature fruit; **F, G**. Transversal section of fresh fruit. Photos by A. Lizette Sierra, Paula Lara, and Luisa Suarez; **B–G**. Andrés F. Majín-Ladino.

We are confident that many new plant species of the common families (i.e., Burseraceae, Lecythidaceae, Leguminosae, Meliaceae) of these wet forests will reveal themselves as we visit the locality and walk along the ridges with our eyes open.

Key to our discoveries is our passion for exploring the forest. Indeed, we have young students like Andrés Majin, and young botanists like Dayro Rodriguez on our side. Don Lucindo is equally attentive to let us know about flowering and fruiting periods and rare plants to examine. The contribution of young botanists and local experts has been key to our discoveries!

Original source:

Jaramillo MA, Pennington TD, Aymard-Corredor GA, Majin-Ladino AF (2026) Morphological and genetic evidence for the Sarcaulus brasiliensis complex (Sapotaceae, Chyrsophylloideae) reveals a new species from the rainforests of the Middle Magdalena Valley, Colombia. PhytoKeys 273: 37-54. https://doi.org/10.3897/phytokeys.273.175192

How Tiny Cave Shrimps Power the Underworld of the Yucatan

Stable isotopes reveal how tiny cave shrimp act as keystone species and interact with one another within the food web of subterranean ecosystems.

Beneath the lush rainforests of the Yucatan Peninsula lies a hidden, subterranean world: a vast network of flooded sinkholes and anchialine caves. These unique underwater systems, which mix fresh and saltwater and are influenced by the tides, have no open connection to the surface and have served as an evolutionary refuge for millions of years.

When marine biologist Fernando Álvarez first encountered these sinkholes (cenotes), he was captivated.

My first impression of these incredibly beautiful places was that I had to work there to find out how that rich crustacean fauna had evolved in those exceptionally large cave systems.
Álvarez recalls

Entrance to a cenote. Photo credit to Fernando Álvarez.
Entrance to a cenote. Photo credit to Fernando Álvarez.
The cenotes where Typhlatya shrimps occur. Photo credit to Fernando Álvarez.

A recent study published in Subterranean Biology, reveals that the answer lies with a tiny, fascinating creature: the anchialine cave shrimp of the genus Typhlatya.

The Keystone of the Cave Food Web

The cenotes where Typhlatya shrimps occur. — The cenotes where *Typhlatya* shrimps occur. Photo credit to Fernando Álvarez.

In most surface ecosystems, sunlight fuels plants, which then feed the rest of the food chain. In the pitch-black depths of anchialine caves, nature has found other ways. Instead of photosynthesis, this ecosystem relies on a chemosynthetic route.

Organic matter from the rainforest floor decomposes and percolates through the porous limestone rock, eventually bringing methane into the cave’s waters. Methanotrophic bacteria consume this methane to produce energy and grow. And this is where Typhlatya shrimp comes in. Equipped with specialized, scraping appendages, these shrimps are adapted to graze on these bacterial mats.

Because they convert microbial growth into animal biomass, Typhlatya shrimps act as “keystone species,” introducing essential nutrients into the cave’s food web. They serve as a crucial initial link that larger subterranean predators feed on.

What we see now is that Typhlatya shrimps are a key component of the anchialine trophic web.
explains Álvarez

Stable Isotopes reveal ecological niches

To better understand how these shrimps survive, Brenda Durán and Fernando Álvarez used stable isotope analysis (looking at carbon and nitrogen signatures in the shrimps’ tissue) to figure out exactly what they are eating.

Typhlatya mitchelli. Photo credit to Fernando Álvarez.
Typhlatya mitchelli. Photo credit to Fernando Álvarez.

Over the years my research has evolved from very descriptive taxonomic studies… to more ecological studies about the interactions among species.
Álvarez notes regarding the motivation behind the study.

Their findings revealed that the different species of Typhlatya living in the Yucatan have carved out their own unique dietary niches, allowing them to peacefully coexist.

For instance, Typhlatya mitchelli relies mostly on decaying vegetation and nitrifying bacteria found in shallower cave sections. While, Typhlatya dzilamensis hangs out deeper in the caves near the halocline (the zone where fresh and saltwater mix), exploiting organic material trapped in that layer. Typhlatya pearsei feeds heavily on the methanotrophic bacterial biomass near the cave ceilings.

@pensoft.publishers
Beneath the lush rainforests of the Yucatan Peninsula lies a hidden, subterranean world: “My first impression of these incredibly beautiful places was that I had to work there to find out how that rich crustacean fauna had evolved in those exceptionally large cave systems.” – Marine biologist Fernando Álvarez. 👇 A reminder to check out our blog here for further insights: https://blog.pensoft.net/?p=18058 👇 Full article in the open-access journal Subterranean Biology: https://doi.org/10.3897/subtbiol.55.164068 #shrimp #yucatan #sciencenews #subterranean #ecology
♬ original sound – Pensoft Publishers

Interestingly, the study found that the shrimps’ diets remain stable across the rainy and dry seasons. However, their diets do shift based on regional geography, such as the difference between the deep, isolated sinkholes of the “Ring of Cenotes” and the sprawling, highly interconnected tunnels of the “Caribbean Cave Area”.

A Fragile World Under Threat

These remarkable cave shrimps belong to an ancient lineage that has survived since the time of the dinosaurs, with relatives spanning the globe from the Mediterranean to Australia. Yet, they are now facing a modern, unprecedented threat.

The rapid urbanization of the Yucatan Peninsula brings deforestation, pollution, and severe environmental deterioration. Because these caves rely entirely on the organic matter percolating from the rainforest above, any damage to the surface environment directly destroys the “vertical integrity” necessary for the caves to function. As Álvarez warns:

We are losing the vertical integrity that these anchialine caves need to function; any changes occurring on the surface within the caves’ area will inevitably affect them.

The anchialine caves of the Yucatan Peninsula are complex, unique ecosystems filled with extraordinary biodiversity. To save the remarkable Typhlatya shrimp and the hidden food web it supports, we must protect the forests above ground.

Blind eel in an anchialine cave. Video credit to Fernando Álvarez.

The Yucatan Peninsula is an area of extraordinary cultural wealth and contains sophisticated and unique ecosystems as the anchialine caves, but sadly all this is disappearing.
he reflects

After all, the survival of this dark, subterranean world depends entirely on the health of the sunlit world above.

Original study

Durán B, Álvarez F (2026) The trophic role of cave shrimps of the genus Typhlatya seen through stable isotope eyes. Subterranean Biology 55: 43-56. https://doi.org/10.3897/subtbiol.55.164068

Remarkable Bat Discoveries from the ZooKeys Archives

These discoveries, ranging from a species rediscovered after a century to new regional records, emphasise the impressive diversity of bats.

Bats are nocturnal mammals that are critical to healthy ecosystems around the globe; they act as pollinators, seed dispersers, and natural pest controllers. In honour of Bat Appreciation Day (17 April), we are highlighting some of the most interesting bats published in our open-access journal ZooKeys.

The following discoveries, ranging from a species rediscovered after a century to new regional records, emphasise the remarkable diversity of bats and the ongoing efforts of researchers to understand and protect them.

The Strange Big-eared Brown Bat (Histiotus alienus)

Adult male of *Histiotus alienus*, captured on the municipality of Palmas, Paraná state, Brazil. (Image credit: Cláudio et al.).

For over a hundred years, the strange big-eared brown bat was known only from a single specimen collected in Uruguay in 1916. This elusive species remained unseen by the scientific community for a century, leading to significant uncertainty regarding its biology and true distribution.

However, a study led by Brazilian researchers documents the rediscovery of this bat in the Palmas Grasslands of southern Brazil, providing the first confirmed record for the country. This finding significantly expands the known range of the species and offers researchers the first opportunity to provide a detailed redescription.

Histiotus alienus is distinguished by its large and oval ears that are connected by a low skin fold. Its fur is a deep, dark brown on the back, while the underside is slightly paler. The rediscovery occurred in a unique landscape characterised by high-altitude grasslands and Araucaria forests, a habitat that is increasingly threatened by human activity.

Learn more: Cláudio VC, Almeida B, Novaes RLM, Navarro MA, Tiepolo LM, Moratelli R (2023) Rediscovery of Histiotus alienus Thomas, 1916 a century after its description (Chiroptera, Vespertilionidae): distribution extension and redescription. ZooKeys 1174: 273-287. https://doi.org/10.3897/zookeys.1174.108553

The Flat-skulled Woolly Bat (Kerivoula depressa)

*Kerivoula depressa*. (Image credit: Liang et al.).

The world of bat taxonomy is constantly shifting as researchers use new tools to differentiate species that look nearly identical. Another study formally documents the first records of the flat-skulled woolly bat, Kerivoula depressa, in China.

Previously, many woolly bats in the region were grouped together under other names, but detailed morphological and genetic analysis confirmed that K. depressa is a distinct part of the Chinese fauna, specifically in Guangdong and Yunnan provinces.

The defining feature of this species is its notably flattened braincase. This physical trait is an evolutionary adaptation that allows the bat to roost in very narrow spaces, such as the hollow internodes of bamboo. The bat has woolly fur that ranges from buff brown to dark brown, and it is relatively small in size.

The presence of this specialist bat in China highlights the complexity of tropical forest ecosystems and the need for further taxonomic work to correctly identify and conserve local biodiversity.

Learn more: Liang X, Xie H, Li Y, Huang Z, Li S, Wu Y, Yu W (2023) First record of the flat-skulled woolly bat Kerivoula depressa and the Indochinese woolly bat K. dongduongana (Chiroptera, Vespertilionidae) in China. ZooKeys 1149: 1-15. https://doi.org/10.3897/zookeys.1149.85821

The Lesser False Vampire Bat (Megaderma spasma)

*Megaderma* *spasma*. (Image credit: Cook-Price et al.).

Islands often host a high number of unique species, yet their mammalian populations are frequently understudied. A comprehensive survey on Ko Pha-ngan, an island off the coast of Thailand, identifies the lesser false vampire bat, Megaderma spasma, as a new record for the island.

This species is a member of a group known for their distinctive appearance and predatory habits. While its name might sound ominous, it does not feed on blood; instead, it preys on insects and occasionally small vertebrates.

The lesser false vampire bat is easily recognised by its exceptionally large ears that are joined at the base and the absence of a visible external tail. During the survey, researchers found this species in a variety of environments, including national park forests, disturbed forest fragments, and areas with human settlements.

The discovery of M. spasma and eighteen other new records on Ko Pha-ngan demonstrates the importance of conducting biodiversity surveys in tourist-heavy regions to inform better conservation policies.

Learn more: Cook-Price DR, Petko ON, Makchai S, Artchawakom T, Suwanwaree P (2025) Mammal diversity survey of Ko Pha-ngan in Surat Thani Province, Thailand. ZooKeys 1229: 77-102. https://doi.org/10.3897/zookeys.1229.118127

The Grey-bellied Dwarf Dog-faced Bat (Molossops griseiventer)

Details specimen of *Molossops* *temminckii*. (Image credit: Ramírez-Chaves et al.).

Some species remain hidden until scientists take a closer look at existing museum collections and genetic data. For years, the grey-bellied dwarf dog-faced bat was considered a synonym of the more common Molossops temminckii. However, a recent revision has revalidated Molossops griseiventer as a separate species.

This grey-bellied dwarf dog-faced bat can be identified by its characteristic greyish ventral fur and specific cranial proportions. Beyond its appearance, the revalidation of this species has major implications for its protection. Unlike its more widespread relatives, M. griseiventer is restricted to the inter-Andean valleys of Colombia, a region heavily impacted by agricultural development.

Because it is now recognised as an endangered species, conservationists can advocate for specific protections for its remaining habitat. This case proves that understanding the true diversity of bats is a prerequisite for effective conservation.

Learn more: Ramírez-Chaves HE, Morales-Martínez DM, Martínez-Medina D, Ossa-López PA, Rivera-Páez FA (2023) Revising the diversity within the Dwarf Dog-faced Bat, Molossops temminckii (Chiroptera, Molossidae), with the revalidation of the endangered Molossops griseiventer. ZooKeys 1180: 237-256. https://doi.org/10.3897/zookeys.1180.109091

The stories of these four species remind us that our understanding of biodiversity is always evolving. Through continued exploration and open-access publishing, we can better appreciate and protect the bats that share our planet.

Once again, Happy Bat Appreciation Day from ZooKeys and Pensoft Publishers!

For more articles on zoology, visit the ZooKeys website and follow the journal on BlueSky and Facebook.

Agricultural and Environmental Modelling (AEM): A New Chapter for Modelling Science Publishing

Pensoft’s Agricultural & Environmental Modelling journal broadens its scope and strengthens its Open Science commitment across agri-food & environmental research.

Today marks the official relaunch of the Food and Ecological Systems Modelling Journal (FESMJ) under a new name – Agricultural and Environmental Modelling (AEM), an open-access journal dedicated to advancing the science and practice of computational and mathematical modelling across agriculture, food systems, natural resources, and environmental sciences.

The first editorial published under the AEM name sets out the journal’s expanded vision, its new article types, and its call to the modelling community.

What Has Changed and What Has Not

AEM retains the founding mission of its predecessors: to make ‘modelling research objects citable, discoverable, and reusable’ and transparent. The journal’s commitment to open access, rigorous peer review, and the recognition of modelling as a first-class scientific endeavour remains unchanged. Publication in AEM remains entirely free for all authors.

What has changed is the scope and structure. The journal’s disciplinary scope now spans the full breadth of modelling in the agricultural and environmental sciences, including management systems, production dynamics, agroecological modelling, as well as food safety, production, quality and supply-chain control, biotechnological research, socio-ecological systems, resource management and more.

Publishing the Full Modelling Lifecycle

A defining feature of AEM is its structured range of article types, designed to give formal, peer-reviewed recognition to each group of authors at every stage of a model’s development.

A complex model is not born in a single paper: it emerges through cycles of formal specification, software implementation, calibration, testing, and application, often carried out by different teams across different project phases. Each of those steps represents genuine scientific work; each deserves recognition.
reads the editorial

Among the most distinctive publication types is the Formal Model, which offers a citable recognition for foundational mathematical and conceptual design. Alongside the more standard article types, such as Review Article; Research Article; and Short Communication, AEM also welcomes contributions framed as Model Testing and Calibration; Model Implementation and Documentation; Software Description; and Data Paper. For each article, the journal’s team has provided an article template to assist authors.

Commitment to Open Science and Reproducibility

AEM is built around the FAIR principles – Findability, Accessibility, Interoperability, and Reusability – these are applied to data, code, and models as peer-reviewed outputs. As such, the journal mandates that all underlying data and source code are made openly available; while machine-learning methods must follow the DOME-ML reproducibility guidelines.

Published on Pensoft’s ARPHA Platform, the journal establishes transparency standards and requires author declarations for LLM use. AEM is archived in CLOCKSS, Zenodo, Portico, and Zendy, and indexed in more than 40 services, including AGRICOLA, Cabells, CABI, FAO AGRIS, and ResearchGate.

Recent research

Overview diagram of the conceptual population model for APODEMUS. The model simulates the wood mouse life cycle, growth and reproduction. Landscape composition is captured by habitat types (numbers) and influences the space use of the simulated wood mice. Exposures can be linked to the use of defined habitat patches and types. Credit to Singer et al., 2026

The most recent paper demonstrates how the Formal Model article type has been utilised to describe APODEMUS, a spatially-explicit simulation model designed to improve pesticide risk assessments for the wood mouse (Apodemus sylvaticus) in European agricultural landscapes. The model provides regulators with a rigorous, transparent blueprint for evaluating how agricultural pesticides affect wild animal populations at the landscape scale.

An Invitation: Submissions and Editorial Board Applications

AEM welcomes submissions from researchers across all disciplines within its scope – whether describing a formal mathematical framework, documenting the calibration of a long-standing model, sharing data, or presenting a new computational workflow. Authors are encouraged to contact the editors directly to discuss specific publication needs.

The journal also welcomes applications from editors worldwide who share AEM’s vision. Experts willing to actively contribute to this unique journal and its community are invited to get in touch via the journal website.

Agricultural and Environmental Modelling is the first journal designed around the full lifecycle of modelling research, from formal specification to calibration, implementation, and application. Every contribution is important; every contribution is citable; credit where credit is due.
commented the Editor-in-Chief, Prof. Christopher Topping

The renaming reflects a natural evolution of the journal’s mission. Agricultural and Environmental Modelling better represents the breadth of work it publishes – spanning the full spectrum of modelling across agricultural, food, and environmental sciences – and reaffirms the journal’s founding commitment to Open Science and to recognising every stage of model development as rigorous scientific work in its own right.
added Pensoft’s founder and CEO, Prof. Lyubomir Penev

You can follow the journal on social media – Bluesky, Facebook and LinkedIn, and sign up for the journal’s email newsletter through the journal’s homepage.

Original sources:

Topping CJ, Nogoy N, Boyadzhieva I, Stoev P, Penev L (2026) A journal by modellers, for modellers: Introducing Agricultural and Environmental Modelling. Agricultural and Environmental Modelling 8: e194160. https://doi.org/10.3897/aem.8.194160

Singer A, Schmolke A, Becher MA, von Blanckenhagen F, van den Brink N, Grimm T, Ibrahim L, Imholt C, Jacob J, Jakoby O, Laucht S, Løvik AN, Martin T, Muñoz CC, Preuss TG, Galic N (2026) Concept for APODEMUS – a wood mouse population model for pesticide risk assessment. Food and Ecological Systems Modelling Journal 7: e175714. https://doi.org/10.3897/fmj.7.175714

The Giants of the Reef: New Citizen Science Project Races to Document Centennial Corals

Ancient, massive coral reef colonies hold scientific treasures but remain largely unknown – now they are being mapped with the help of citizen science.

Guest blog post by Federica Siena

Coral reefs hide “scientific treasures” that have survived for centuries, yet many of these giant, ancient organisms remain largely unknown to science. A new study published in the journal Nature Conservation introduces “Map the Giants,” a pioneering citizen-science initiative launched by researchers from the University of Milano-Bicocca to find these giant coral colonies before they are lost to escalating global pressures.

Map the Giants® was born from a sobering yet stimulating realization by the research team: despite their centennial age and their remarkable sizes – defined by the project as colonies measuring at least 5 meters in length – these colonies lack formal recognition. This leaves them vulnerable to disappearance simply because we do not know they exist.

A Mission of Discovery

Coral giant, video credit to Map the Giants®

While these coral giants have withstood the elements for hundreds of years, the last century has brought unprecedented local and global threats. “We are in a race to recognize these organisms. They have survived for centuries, but modern pressures are increasing so rapidly that some colonies may disappear before they are even documented,” the authors emphasized the urgency.

The research highlights that identifying these giants is not just a scientific necessity, but a vital tool for fostering ocean literacy and raising awareness among local stakeholders and the broader community – a goal made possible through a standardized reporting protocol and multi-expert validation that ensures robust data collection regardless of the contributor’s background.

Secrets of Survival

Pavona cf. clavus from Vietnam, 195 metres in perimeter. Credits to Anuar Abdulla
Turbinaria sp. measuring 11m in diameter. Credits to Map the Giants
Pavona sp. from Indonesia measuring 78 m in perimeter. Credits to Easy Divers Bali

The team searched for more than just size; they also looked for vital clues to “coral resilience“. Long-lived giant corals act as high-resolution time capsules, archiving centuries of past climate and environmental conditions within their skeletons.

By locating and studying these ancient survivors, we hope to unlock the genetic secrets and traits that have enabled these specific individuals to resist and acclimatize to environmental changes.
researchers explained

Furthermore, the project aims to provide a validated sampling frame to support peer-reviewed studies on resilient “super-corals,” which could help future-proof and restore the reefs of tomorrow. Ultimately, by identifying these culturally and ecologically valuable colonies, the researchers plan to collaborate with stakeholders to explore protection measures and establish them as marine monuments.

The Power of the Community

@pensoft.publishers
Some #corals have been alive for CENTURIES – and scientists are just now racing to find them before they disappear. 🪸 “Map the Giants” is a new citizen science project tracking coral colonies 5+ metres long. In just 18 months, contributors from 22 countries have already added 133 verified entries to the global database. 👐Pretty incredible what a community can do. Photo and video credit to: Map the Giants, Luca Fallati, Federica Siena, Anuar Abdulla and Easy Divers Bali #coralreefs #science #marine #climatechange
♬ mirage – théos & Antent

The project has already seen remarkable success. In its first 18 months, the initiative received 195 submissions from 22 countries, resulting in 133 validated entries added to the public database. Most surprisingly, the project reports of an incredibly large Porites sp. coral measuring over 60 metres in linear length or a Pavona cf. clavus over 195 metres in perimeter, offering new inspirations for future scientific research.

Citizen science is pivotal. The sheer scale of coral reefs requires a concerted effort. Anyone with a camera and a snorkel can join us. A simple report of a giant’s existence is the first step in recognizing and studying them.
said the project lead Prof. Simone Montano

How to Join the Search

The project is designed for total accessibility. Through a dedicated website (www.mapthegiants.com) and social media presence, the public can contribute data and learn about the beauty and fragility of reef ecosystems. The adaptable protocol ensures that whilst data are robust, the background of the contributor will only affect the level of complexity of the data, not the report on its own. By turning divers and reef users into “coral seekers,” the project aims to bridge the gap between professional science and community-led conservation.

Original source:

Siena FM, Gabbiadini A, Fallati L, Galli P, Montano S (2026) Map the Giants: a new citizen-science portal to map, study and protect the largest coral colonies. Nature Conservation 63: 127-151. https://doi.org/10.3897/natureconservation.63.182923