Tag: Chiroptera

Novel research on African bats pilots new ways in sharing and linking published data

A colony of what is apparently a new species of the genus Hipposideros found in an abandoned gold mine in Western Kenya
Photo by B. D. Patterson / Field Museum

Newly published findings about the phylogenetics and systematics of some previously known, but also other yet to be identified species of Old World Leaf-nosed bats, provide the first contribution to a recently launched collection of research articles, whose task is to help scientists from across disciplines to better understand potential hosts and vectors of zoonotic diseases, such as the Coronavirus. Bats and pangolins are among the animals already identified to be particularly potent vehicles of life-threatening viruses, including the infamous SARS-CoV-2.

The article, publicly available in the peer-reviewed scholarly journal ZooKeys, also pilots a new generation of Linked Open Data (LOD) publishing practices, invented and implemented to facilitate ongoing scientific collaborations in times of urgency like those we experience today with the COVID-19 pandemic currently ravaging across over 230 countries around the globe.

In their study, an international team of scientists, led by Dr Bruce Patterson, Field Museum‘s MacArthur curator of mammals, point to the existence of numerous, yet to be described species of leaf-nosed bats inhabiting the biodiversity hotspots of East Africa and Southeast Asia. In order to expedite future discoveries about the identity, biology and ecology of those bats, they provide key insights into the genetics and relations within their higher groupings, as well as further information about their geographic distribution.

“Leaf-nosed bats carry coronaviruses–not the strain that’s affecting humans right now, but this is certainly not the last time a virus will be transmitted from a wild mammal to humans. If we have better knowledge of what these bats are, we’ll be better prepared if that happens,”

says Dr Terrence Demos, a post-doctoral researcher in Patterson’s lab and a principal author of the paper.
One of the possibly three new to science bat species, previously referred to as Hipposideros caffer or Sundevall’s leaf-nosed bat
Photo by B. D. Patterson / Field Museum

“With COVID-19, we have a virus that’s running amok in the human population. It originated in a horseshoe bat in China. There are 25 or 30 species of horseshoe bats in China, and no one can determine which one was involved. We owe it to ourselves to learn more about them and their relatives,”

comments Patterson.

In order to ensure that scientists from across disciplines, including biologists, but also virologists and epidemiologists, in addition to health and policy officials and decision-makers have the scientific data and evidence at hand, Patterson and his team supplemented their research publication with a particularly valuable appendix table. There, in a conveniently organized table format, everyone can access fundamental raw genetic data about each studied specimen, as well as its precise identification, origin and the natural history collection it is preserved. However, what makes those data particularly useful for researchers looking to make ground-breaking and potentially life-saving discoveries is that all that information is linked to other types of data stored at various databases and repositories contributed by scientists from anywhere in the world.

Furthermore, in this case, those linked and publicly available data or Linked Open Data (LOD) are published in specific code languages, so that they are “understandable” for computers. Thus, when a researcher seeks to access data associated with a particular specimen he/she finds in the table, he/she can immediately access additional data stored at external data repositories by means of a single algorithm. Alternatively, another researcher might want to retrieve all pathogens extracted from tissues from specimens of a specific animal species or from particular populations inhabiting a certain geographical range and so on.

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The data publication and dissemination approach piloted in this new study was elaborated by the science publisher and technology provider Pensoft and the digitisation company Plazi for the purposes of a special collection of research papers reporting on novel findings concerning the biology of bats and pangolins in the scholarly journal ZooKeys. By targeting the two most likely ‘culprits’ at the roots of the Coronavirus outbreak in 2020: bats and pangolins, the article collection aligns with the agenda of the COVID-19 Joint Task Force, a recent call for contributions made by the Consortium of European Taxonomic Facilities (CETAF), the Distributed System for Scientific Collections (DiSSCo) and the Integrated Digitized Biocollections (iDigBio).

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Original source:

Patterson BD, Webala PW, Lavery TH, Agwanda BR, Goodman SM, Kerbis Peterhans JC, Demos TC (2020) Evolutionary relationships and population genetics of the Afrotropical leaf-nosed bats (Chiroptera, Hipposideridae). ZooKeys 929: 117-161. https://doi.org/10.3897/zookeys.929.50240

Guest Blog Post: New Area of Importance for Bat Conservation in Honduras

The recognition of the “Ceguaca, la Mujer de los Juncos” locality comes as a result of research work – published last year in Subterranean Biology – which produced the first checklist of bats for Santa Bárbara

Guest blog post by Eduardo Javier Ordoñez-Trejo and Manfredo Alejandro Turcios-Casco

Bat populations are threatened due to fragmentation and loss of their habitats. Meanwhile, dry forests are some of the least studied and most threatened ecosystems in Honduras, and similarly, so have been the caves.

We had to walk at least two hours to reach either of the caves in El Peñon or Quita Sueño, so we would take our full equipment: for camping, cooking and studying bats.
Photo by Hefer Ávila

Caves are important reservoirs of species, as they offer perks no other habitat can provide at once: a refuge from predators, inconstant weather, and a critical venue for social interactions, reproduction, hibernation, roosting and nutrients. In order to protect bat populations, the Latin American and Caribbean Web for Bat Conservation (RELCOM) supports the establishment of Areas of Importance for the Conservation of Bats, abbreviated as AICOMS (Spanish for Areas with Importance for the Conservation of Bats) .

It was at least a two-hour walk between the caves of Monte Grueso and the caves of El Peñon. The final stint, though, included a swim across Rio Ulúa, one of most extensive rivers in Honduras.
Photo by Hefer Ávila

Together with biologists of the National Autonomous University of Honduras (UNAH) and local community members, we provided the first ever checklist of bat species in the Dry Forest of Ceguaca, Santa Barbara (Honduras), and described the importance of two caves in the area for bat conservation based on species richness. We published this study last June in Subterranean Biology.

The study is openly accessible in Subterranean Biology

We found that caves in Ceguaca are inhabited by at least 23 bat species of four families, which represents approximately a fifth of all species known from Honduras. Their inhabitants include several threatened species like the hairy-legged vampire bat (Diphylla ecaudata), one of the three existing vampire bats, and rare species with few official records in the area, such as Schmidts’s big-eared bat (Micronycteris schmidtorum). These caves may also represent a critical site for roosting and nursing. During our study, we managed to record pregnant and lactating females of several species, as well as reproductive males.

The certificate issued by RELCOM recognising the caves in Ceguaca as an Area of Importance for the Conservation of Bats, dated 6th March 2020

“It feels wonderful to see that our work has had great results and that with our efforts, we established an area where bats will be protected and studied. This certification also includes the name of Roberto Castellano, an elder member of the community of Ceguaca, who helped us during the fieldwork as our guide. He was a great conservationist of this area and protector of the caves. Unfortunately, he passed away during the study, however, due to his enormous contribution, we dedicated our article to him and included him as part of this AICOM success.”

José Alejandro Soler Orellana, co-author of the study.

Using what we learned in Ceguaca’s caves, we approached the Program for Bat Conservation of Honduras (PCMH) and showed them the evidence the locality was indeed a precious place with a spectacular bat diversity. Consequently, thanks to our collaboration with the PCMH, the site was effectively declared as an Area of Importance for the Conservation of Bats by RELCOM on 6th March 2020. 

This is an enormous step for bat conservation in the country. Bat conservation efforts should focus on studying and protecting these and other important habitats. We also need to make sure that local people appreciate the important role the bats play in the ecosystem.

A close up of a spider Description automatically generated
We captured this adult Pallas’s long-tongued bat (Glossophaga soricina) female in a cave in Monte Grueso. She must have been returning to the cave after spending the day pollinating local plants. During these surveys, we found trees with opened flowers of Mexican calabash (Crescentia alata).
Photo by Hefer Ávila

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Research article:

Turcios-Casco MA, Mazier DIO, Orellana JAS, Ávila-Palma HD, Trejo EJO (2019) Two caves in western Honduras are important for bat conservation: first checklist of bats in Santa Bárbara. Subterranean Biology 30: 41–55. https://doi.org/10.3897/subtbiol.30.35420

Black mouse-eared bat goes green: First case of a fruit-eating bat in the largest genus

Out of more than 110 allegedly well-studied mouse-eared bat species, there turns out to be one that has been keeping its diet a mystery. Belonging to the largest group of bats, known to be feeding on insects exclusively, the widely common Black mouse-eared bat (Myotis nigricans) is found to also seek fruits. The Brazilian team of researchers, led by biologist Roberto Leonan Morim Novaes, Fiocruz, conducted their work in the Rio de Janeiro’s reserve Reserva Ecologica de Guapiacu (REGUA), a 5,500 ha remnant of Atlantic Forest, and have their findings and discussion published in the open-access Biodiversity Data Journal.

The unexpected first documentation of fruit consumption in this group of bats happened when the researchers captured a number of bats with mist-nets and kept them alone in cotton bags for about thirty minutes before handling for identification and biometry. Thus, they managed to retrieve feces of the specimens, which showed to contain small seeds. Later, in an experiment, part of the seeds even grew into seedlings. As a result, the scientists report the first fruit consumption within the mouse-eared bat genus, called Myotis, as well as the whole subfamily Myotinae. Their finding might also mean that the examined species plays the ecological role of a seed disperser.

Although the finding is based on a single specimen of Black mouse-eared bat, the researchers reject the possibility of the cotton bags having been previously contaminated with feces of other animals. Dismissed is also the chance of the seeds having been consumed on accident while predation, since the Black mouse-eared bat hunts insects during flight.

Overall, bats are remarkable because of their varied eating habits. Commonly eating insects, there are predatory groups specialised in feeding on other invertebrates, terrestrial vertebrates, fishes or blood. Among the plant-eating, there are those specialised in fruits, flowers or leaves. A few are classified as omnivores and yet few, which are known to be using one category of food exclusively, on rare occasions include an untypical food item to compliment their diet. For example, a carnivorous bat may sporadically consume a plant and vice versa.

“The discovery of a well-studied species, previously considered strictly insectivorous, foraging on fruits shows how little we know about the biology and natural history of Neotropical bats,” conclude the authors.

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Original source:

Novaes R, Souza R, Ribeiro E, Siqueira A, Greco A, Moratelli R (2015) First evidence of frugivory in Myotis(Chiroptera, Vespertilionidae, Myotinae). Biodiversity Data Journal 3: e6841. doi:10.3897/BDJ.3.e6841