Tag: LifeWatch

Advancing eScience for biodiversity: Pensoft at the LifeWatch ERIC Biodiversity & Ecosystem eScience Conference

The conference facilitated valuable networking opportunities, meeting us with old friends but also giving us a chance to discuss potential future collaborations.

Between 30 June and 3 July, Pensoft’s team attended the LifeWatch ERIC Biodiversity & Ecosystem eScience Conference (BEeS) in Heraklion, Greece. The event was organized by the LifeWatch ERIC Infrastructure with the aim of tackling the Triple Planetary Crisis (climate change, biodiversity loss, and pollution) through eScience and European Research Infrastructures (RIs). With almost 200 registered participants, the conference discussed “how cutting-edge eScience and European Research Infrastructures can work together to develop innovative solutions for a sustainable future.”

Hosted by the Hellenic Centre for Marine Research, BEeS convened 193 registrants, featured 59 presentations, 36 posters, and provided 12 training sessions, highlighting the vital role of technology, data, and collaborative efforts in confronting global environmental challenges.

Exterior view of the Greek Centre for Marine Research, featuring large windows and a shaded entrance under a blue sky.
A woman in a brown dress and a man in a maroon shirt approach a LifeWatch ERIC banner, entering a building in bright sunlight.

On the first day, a closed-door meeting was held with the aim of adopting a Declaration of Intent (the Crete Declaration) between the involved RIs, e-infrastructures, EU-relevant projects, and Pensoft, as a scientific publisher. The objective was to advance the One Health approach—a strategy that optimizes the health of people, animals, and ecosystems. The Declaration outlines four key strategic commitments:

  • strengthening strategic collaboration
  • advancing data integration and FAIR (Findable, Accessible, Interoperable, Reusable) principles
  • supporting Open Science Ecosystems
  • informing policy and practice

Christos Arvanitidis, the president of LifeWatch ERIC, came to the Pensoft stand to meet with our staff and discuss our agenda.

Two men stand behind an exhibition table filled with brochures and materials for biodiversity science, showcasing several organizations and journals.

Pensoft was also invited to present the outcomes of the BiCIKL project, on which we partnered with LifeWatch ERIC, as part of the Mapping Life on Planet Earth: Biogeography in a Changing World session.

Teodor Georgiev, Chief Technology Officer of Pensoft, delivered the presentation, titled The BiCIKL project traverses obstacles to FAIR and linked biodiversity data usage.

The BiCIKL project, which concluded on 30 April 2024, aims to catalyse the culture change in the way biodiversity data are identified, linked, integrated and re-used across the research lifecycle. Key outcomesinclude the creation of uni- and bi-directional links between biodiversity RIs, the establishment of best practices for Persistent Identifiers (PIDs), recommendations for interoperability between RIs, and the development of automated tools and workflows for published data liberation and FAIR-isation. The presentation also introduced the Biodiversity Knowledge Hub, a one-stop portal for understanding the complex, but increasingly interconnected landscape of biodiversity RIs.

Georgiev also delivered a poster presentation, discussing SOLO: a collaborative open-review and publishing platform supporting the EU Soil Mission.

SOLO, a Horizon Europe project in which Pensoft is involved, aims to identify current knowledge gaps, drivers, bottlenecks, and novel research and innovation approaches to be considered in the European Soil Mission research and innovation roadmap. Hosted on Pensoft’s ARPHA publishing platform and integrating the ARPHA Writing Tool, SOLO engages researchers, practitioners, citizens and other stakeholders in the development and review of ‘living’ open-access documents supporting the EU Mission “A Soil Deal for Europe.” Pensoft’s contribution to SOLO encompasses communication, dissemination, data management, and the crucial development of the platform itself.

Pensoft joins EU-funded project SOLO, supporting the EU Mission “A Soil Deal for Europe”

Fifteen research infrastructures and 15 projects were officially represented at BEes, including two other Horizon Europe projects where Pensoft is a partner: ANERIS, which focuses on scientific tools and methods for marine life-sensing and monitoring, and BMD, which offers a single access point to high-throughput biodiversity monitoring tools.

Berta Companys of the Spanish National Research Council introduced ANERIS with an insightful presentation on the project’s innovative technologies, workflow, and overall approach. Her talk highlighted the key challenges connected to marine biodiversity and monitoring sea and ocean ecosystems that ANERIS is tackling and outlined the solutions the project is developing to address them, such as the implementation of Operational Marine Biology (OMB) data products.

A speaker gestures behind a transparent podium adorned with a ship logo, in a conference setting.

BMD was represented by coordinator Niels Raes of Naturalis Biodiversity Center.

An exhibition booth displays various informational materials related to biodiversity, flanked by two attendees.

The conference facilitated valuable networking opportunities, meeting us with old friends but also giving us a chance to discuss potential future collaborations. Pensoft engaged with partners from other European Research Infrastructures, sharing a dedication to collaborative research and the development of open-access resources addressing global environmental challenges.

LifeWatchGreece launches a Special Paper Collection for Greek biodiversity research

Developed in the 1990s and early 2000s, LifeWatch is one of the large-scale European Research Infrastructures (ESFRI) created to support biodiversity science and its developments. Its ultimate goal is to model Earth’s biodiversity based on large-scale data, to build a vast network of partners, and to liaise with other high-quality and viable research infrastructures (RI).

Being one of the founding LifeWatch member states, Greece has not only implemented LifeWatchGreece, but it is all set and ready to “fulfill the vision of the Greek LifeWatch RI and establish it as the biodiversity Centre of Excellence for South-eastern Europe”, according to the authors of the latest Biodiversity Data Journal‘s Editorial: Dr Christos Arvanitidis, Dr Eva Chatzinikolaou, Dr Vasilis Gerovasileiou, Emmanouela Panteri, Dr Nicolas Bailly, all affiliated with the Hellenic Centre for Marine Research (HCMR) and part of the LifeWatchGreece Core Team, together with Nikos Minadakis, Foundation for Research and Technology Hellas (FORTH), Alex Hardisty, Cardiff University, and Dr Wouter Los, University of Amsterdam.

lwg-presentationMaking use of the technologically advanced open access Biodiversity Data Journal and its Collections feature, the LifeWatchGreece team is publishing a vast collection of peer-reviewed scientific outputs, including software descriptions, data papers, taxonomic checklists and research articles, along with the accompanying datasets and supporting material. Their intention is to demonstrate the availability and applicability of the developed e-Services and Virtual Laboratories (vLabs) to both the scientific community, as well as the broader domain of biodiversity management.

The LifeWatchGreece Special Collection is now available in Biodiversity Data Journal, with a series of articles highlighting key contributions to the large-scale European LifeWatch RI. The Software Description papers explain the LifeWatchGreece Portal, where all the e-Services and the vLabs provided by LifeWatchGreece RI are hosted; the Data Services based on semantic web technologies, which provide detailed and specialized search paths to facilitate data mining; the R vLab which can be used for a series of statistical analyses in ecology, based on an integrated and optimized online R environment; and the Micro-CT vLab, which allows the online exploration, dissemination and interactive manipulation of micro-tomography datasets.

The LifeWatchGreece Special Collection also includes a series of taxonomic checklists (preliminary, updated and/or annotated); a series of data papers presenting historical and original datasets; and a selection of research articles reporting on the outcomes, methodologies and citizen science initiatives developed by collaborating research projects, which have shared human, hardware and software resources with LifeWatchGreece RI.

LifeWatchGreece relies on a multidisciplinary approach, involving several subsidiary initiatives; collaborations with Greek, European and World scientific communities; specialised staff, responsible for continuous updates and developments; and, of course, innovative online tools and already established IT infrastructure.

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Original source:

Arvanitidis C, Chatzinikolaou E, Gerovasileiou V, Panteri E, Bailly N, Minadakis N, Hardisty A, Los W (2016) LifeWatchGreece: Construction and operation of the National Research Infrastructure (ESFRI). Biodiversity Data Journal 4: e10791. https://doi.org/10.3897/BDJ.4.e10791

Additional information:

This work has been supported by the LifeWatchGreece infrastructure (MIS 384676), funded by the Greek Government under the General Secretariat of Research and Technology (GSRT), ESFRI Projects, National Strategic Reference Framework (NSRF).