Tag: scholarly publishing

New open-access journal Metabarcoding & Metagenomics joins the lines of publisher Pensoft

The new innovative academic journal makes use of the one-of-a-kind publishing platform ARPHA and its collaborative writing tool via the ARPHA-XML workflow

A new innovative open-access academic journal Metabarcoding and Metagenomics (MBMG) is launched to welcome novel papers from both basic and applied aspects.

Focusing on genetic approaches to study biodiversity across all ecosystems, MBMG covers a considerably large scope of research including environmental, microbial and applied metabarcoding and metagenomics (especially DNA-based bioassessment and -monitoring, quarantine, nature conservation, species invasions, eDNA surveillance), as well as associated topics, such as molecular ecology, DNA-based species delimitation and identification, and other emerging related fields. Submissions of bioinformatic approaches to MBMG (algorithms, software) are also encouraged.

Featuring novel article formats and data publishing workflows, MBMG is to reflect the rapid growth in the use of metabarcoding and metagenomics in life and environmental sciences.

Issued via ARPHA – the first ever publishing platform to support manuscripts all the way from authoring to peer review to publication and dissemination, designed by the academic publisher and technology provider Pensoft, the new journal is to host a wide range of outcomes from across the research cycle, including data, models, methods, workflows, software, perspectives, opinions, implementation strategies, as well as conventional research articles.

While the above-mentioned publication types are already available in other journals published on the ARPHA platform, such as Research Ideas and Outcomes (RIO), Biodiversity Data Journal and One Ecosystem, MBMG provides five extra domain-specific article types, namely: Emerging Technique, Applied Study, DNA Barcode Release, Primer Validation and Probe Validation.

The journal’s articles are to be available in three formats (PDF, XML, HTML) and full of semantic enhancements for better human- and machine-readability and discoverability. The XML-based workflow also ensures that content and data are available for extraction, indexing and re-use immediately after publication.

With Pensoft standing for transparent, reproducible and open science, the authors at MBMG are strongly encouraged to make all data publicly available either within the publication itself, or to link to external repositories. In their turn, the peer reviewers are also suggested to provide public access to their reviews and identities.

In time for the launch, MBMG has already gathered a team of experienced and renowned scientists from across the globe together on its editorial and advisory board.

“I am pleased to introduce the Metabarcoding and Metagenomics journal to the family of Pensoft,” says Prof. Lyubomir Penev, Founder and Managing Director at Pensoft. “With its exhaustive scope and advanced services and concept, I believe it fills fantastically a niche in our strong portfolio of mostly biodiversity- and ecology-themed journals.”

“Metabarcoding and metagenomics approaches are rapidly progressing and revolutionise research and its application alike,” Chief Editor Prof. Florian Leese states. “With the MBMG journal we provide an ideal platform to respond to this rapidly growing field, nucleate the emerging knowledge and stimulate further development.”

The first batch of research papers published in MBMG are now available on their new website.

“MBMG not only complements the range of journals in the field of molecular environmental life sciences, but also stands out as a novel outlet providing several unique features designed to help researchers to prepare for, and professionally deal with, the massive “deluge” of data,” reads the Editorial.

To celebrate the launch, MBMG starts with a tempting offer to potential authors: publishing will be completely free of charge during the beginning stages of the journal.

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Journal of Orthoptera Research joins scholarly publisher Pensoft’s open access portfolio

The Orthopterists’ Society’s Journal of Orthoptera Research (JOR) joins the growing portfolio of open access titles published on the Pensoft-developed journal publishing platform ARPHA (abbreviation for Authoring, Reviewing, Publishing, Hosting and Archiving).

The first issue in collaboration with Pensoft is live on the new journal’s website as of June 2017.

While preserving its attractive and well-known style and global expertise on the order Orthoptera and other closely allied insect orders, the journal now offers increased accessibility through a modernised design, intuitive interface, and many high-tech perks for authors, readers, reviewers and editors alike.

In continuous publication since 1992, Journal of Orthoptera Research is no newcomer to the arena of entomological peer-reviewed journals. It has enjoyed an esteemed place in the canon as the only global scientific publication dedicated to publishing work on the grasshoppers, crickets and bushcrickets. Now, the move to Pensoft ushers the journal to a new digital age by providing a modernised platform for showcasing fascinating research on these most charismatic and valuable of insects.

Among the innovative advantages is fast-track and convenient publishing thanks to ARPHA. Each manuscript is carried through all stages from submission and reviewing to dissemination and archiving on a single platform to facilitate and expedite the process using the best technological capabilities. Furthermore, this results in publications available in three formats (PDF, XML, HTML) with state-of-the-art semantic enhancements, so that articles can be easily found, accessed and harvested by both humans and machines.

Among the nine articles comprising the first Journal of Orthoptera Research issue since joining Pensoft [JOR Vol. 26(1)], there is a new species of bushcricket from China that sings an unusually complex tune when courting its potential partners; a curious experiment in the colour-shifting abilities of adult grasshoppers; and a description of a unique YouTube video showing two male bushcrickets engaging in previously unreported sexual activities.

“It’s pretty exciting to welcome Journal of Orthoptera Research to Pensoft’s family,” says Pensoft’s founder and CEO Prof. Lyubomir Penev. “We first started discussions on the possible publication of the journal by Pensoft back in 2010 and have resumed them a couple of times since. I am happy to see the journal now published in the modern design and format it really deserves!”

“I’m certain that ARPHA will secure the right place for Journal of Orthoptera Research among a whole portfolio of excellent zoological journals. Our journal will definitely feel at home next to the names of Journal of Hymenoptera Research, Nota Lepidopterologica, Zoologia, ZooKeys and many others,” says Editor-in-Chief Dr. Corinna Bazelet.

The journal will continue being released biannually. Traditionally, it publishes research on the insect order Orthoptera, as well as its close allies – Blattodea, Mantodea, Phasmatodea, Grylloblattodea, Mantophasmatodea and Dermaptera. The range of biological studies of these insects includes diversity, conservation, and control and management of pest species. As for the article types accepted in the journal, in addition to original research, editors will be considering review articles, short communications, and articles focusing on policy and management of Orthoptera.

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Scopus CiteScore metrics integrated with Pensoft journals

Having long been indexed by the largest abstract and citation database of peer-reviewed literature – Scopus, Pensoft journals published on the ARPHA journal publishing platform have now accommodated its latest handy products.

Both Scopus CiteScore and CiteScoreTracker have been integrated with journals published by Pensoft on ARPHA, so that evidence of their impact can be easily provided on a monthly, as well as yearly basis. The metrics are already visible on the homepages of 15 journals published by Pensoft.

Scopus calculates its CiteScore through a simple formula based on the average citations received per document.

The yearly CiteScore is how many times papers published in the previous three years with a single journal are cited in that particular year.

Meanwhile, the CiteScoreTracker provides an estimate on a monthly basis. Since the citation count builds up every month, it is still consistent with the complete year’s score, providing helpful information for a journal’s current performance. Furthermore, it ensures that journals which have only recently been indexed by Scopus are quick to receive their own CiteScore.

To provide an impact estimate as robust and reliable as possible, Scopus CiteScore relies on both the largest database of peer-reviewed literature, and inclusiveness of all publication types. While the latter is necessary in order to acknowledge the scientific value of all academic papers that have found their place in a scholarly journal, it also significantly reduces the risk of metrics manipulation.

To further illustrate the impact of Pensoft publications, a direct citation feed has recently been integrated that shows the number of Scopus citations for a particular publication. Accessible from a tab visible in each publication is a count of scholarly articles that have cited it in Scopus, in addition to previously integrated Crossref, Google Scholar and PubMed.

“Integrating Scopus CiteScore and CiteScoreTracker with all Pensoft journals and potentially with all journals published on ARPHA is what I believe to be of great benefit to all our present and future users, readers and editorial team,” says Pensoft’s founder and CEO Prof. Lyubomir Penev. “It is a fantastic way to keep a real-time track of our progress and impact in the scientific community.”

“We are delighted that Pensoft are including CiteScore metrics on their journal pages. They join a selection of early adopting publishers that recognise the need to provide their users with a range of indicators to better measure the impact of their journals,” says Chris James, Product Manager Research Metrics at Elsevier, who is responsible for CiteScore.

Journal publishing platform ARPHA partners with content recommendation engine TrendMD

Thanks to the new collaboration between content recommendation engine TrendMD and journal publishing platform ARPHA, readers of all journals under Pensoft’s imprint, as well as those using the white-label publishing solution provided by the platform, will be given a useful list of recommended articles related to the study they are reading. The new widget is to save the users a great amount of time, by simply pointing them to the most relevant papers on the topic from across a constantly expanding network of of peer-reviewed articles and research news.

While nearly 8,000 new scholarly articles are published each day, it is basically impossible staying up-to-date with the news from a single scientific field, let alone doing cross-disciplinary research. Furthermore, sifting out the quality literature is another painstaking activity no academic is looking forward to. Hence, TrendMD comes as the sensible solution to help a reader find the most relevant and fine studies on a particular topic. The widget’s recommendations are based on the topic a user is currently reading, what papers they have read in the past, and the articles others with similar interests have sought out – all available from the most authoritative and quality journals in the world.

“TrendMD is excited to welcome Pensoft, a highly innovative, open access, online publishing platform, to the TrendMD network! This partnership will bring over 5,000 open access articles and books in the field of natural history, predominantly taxonomy and organismal biology, to TrendMD’s ever expanding network,” says Paul Kudlow, CEO and co-founder of TrendMD.

“In our continuing effort to develop and implement the most novel tools and workflows in academic publishing, at Pensoft we are pleased to have integrated our journal publishing platform ARPHA with the new-age scholarly innovation that is TrendMD’s tool, so that our readers have an easy and constant access to the most relevant and best-quality research,” says Pensoft’s CEO and founder Prof. Lyubomir Penev.

Five new Pensoft journals integrated with Dryad to improve data discoverability

Academic publisher Pensoft strengthens partnership with Dryad by adding its latest five journals to the list integrated with the digital repository. From now on, all authors who choose any of the journals published under Pensoft’s imprint will be able to opt for uploading their datasets on Dryad. At the click of a button, the authors will have their data additionally discoverable, reusable, and citable.

Started in 2011 as one of the first ever integrated data deposition workflows between a repository (Dryad) and a publisher (Pensoft), the partnership has now been reinforced to cover publications submitted to any of Pensoft’s 21 journals, including recently launched Research Ideas and Outcomes (RIO) and One Ecosystem, as well as BioDiscovery, African Invertebrates and Zoologia, which all moved to Pensoft within the last year.

By agreeing to deposit their datasets to Dryad, authors take advantage of a specialised and highly acknowledged platform to easily showcase and, hence, take credit for their data. On the other hand, the science community, including educators and students, can readily access the data, facilitating verification, citability and even potential collaborations.

“Dedicated to open and reproducible science, at Pensoft we have always strived to encourage our authors to make their research as transparent and, hence, trustworthy as possible, by providing the right infrastructure and support,” says Pensoft’s founder and CEO Prof. Lyubomir Penev. “By strengthening our long-year partnership with Dryad, I envision more and more authors, who publish in our journals, adding open data to their list of best practices.”

“Dryad works to promote data that are openly available, integrated with the scholarly literature, and routinely re-used to create knowledge,” said Dryad’s Executive Director, Meredith Morovati. “We are encouraged by the growth of our partnership with Pensoft, one of our earliest supporters. We are honored to provide services to Pensoft authors to ensure their data is openly available, linked to the article, and preserved for future use and for the future of science.”

Articles published in journals on ARPHA indexed by ReadCube for easier discoverability

While research outputs are being published at a rate greater than ever, it is becoming more and more likely to simply pass by the study that is most relevant to your particular interest. This is where ReadCube comes to aid. Now, thanks to the new partnership between ARPHA and ReadCube, all articles in the journals published on Pensoft‘s ARPHA platform, have been indexed and therefore, easily discoverable via ReadCube’s free web, desktop and mobile apps.

“Our mission is to ensure that scholarly literature is not only easily discoverable but also that each article itself is seen as a conduit for deeper discovery, not simply an endpoint,” said Robert McGrath, CEO at ReadCube. “This collaboration with Pensoft supports both these objectives, and we are thrilled to have them as a partner.”

In addition to advanced searchability, all Pensoft articles are also available in ReadCube’s Enhanced PDF format. While maintaining the simple and clean look of a standard PDF at first glance, Enhanced PDFs offer interactive feature connecting the reader to relevant information around the article including supplements, article metric, annotation tools, clickable in-line references and even hyperlinked author names which redirect readers to the author’s historical publications.

“I am pleased to see all journals published on ARPHA, which is to say not only the ones published by Pensoft, but also those that use our white-label journal publishing platform, being indexed by ReadCube,” said Pensoft’s founder and CEO Prof Lyubomir Penev. “As a strictly open-access publisher and technological provider with a strong background in semantic content enrichment, Pensoft has always strived to keep research as accessible and discoverable as possible. We are very pleased to collaborate with like-minded people who have their own innovative view on science to be on hand to anyone who asks for it.”

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Additional information:

About ReadCube:

ReadCube develops software to make the world of research more accessible and connected – serving researchers, publishers, academic and commercial organizations.

ReadCube’s web, desktop, and mobile reference management apps, including the ReadCube and Papers brands, dramatically improve the ways researchers find, organize, read, share, and cite research literature

ReadCube’s publisher solutions, adopted by over 70 partners to date, include indexing via Readcube Discover, enhanced PDF viewing and sharing via ReadCube Connect, and article-level ecommerce via ReadCube Checkout.

About ARPHA:

ARPHA is the first end-to-end journal publishing solution that supports the full life cycle of a manuscript, from authoring through submission, peer review, publication and dissemination. With ARPHA, journals and publishers enjoy a complete set of services, which enable tailored, technologically advanced publishing solutions. The platform enables a variety of publishing models through a number of options for branding, production and revenue models to choose from.

Publishing platform ARPHA partners with Altmetric to track online attention to research

With a research output mentioned online every 1.8 seconds, it only makes sense for the science community to grow curious of how they could access the knowledge of this public interest to better and build on their work.

Journal publishing platform ARPHA, developed by academic publisher Pensoft, has partnered with Altmetric to enable authors, readers and other users to track the online shares and discussions relating to each research output in journals published on ARPHA.

Thanks to the integration, a single click in the top menu of an article reveals the Altmetric donut visualisation, which provides an at-a-glance summary of the attention the item has received. The colours of the donut reflect the source of the attention, and the user can click on the image to be taken to the Altmetric details page, which provides a record of all of the mentions. Data is updated in real-time to provide insight into how the item is being received and shared.

To deliver such detailed information, Altmetric follows 2,000 mainstream media outlets in over 30 languages, social networks, public policy documents, post-publication peer-review forums, online reference managers, blogs, and Wikipedia.

As a result, all authors, readers, editors and funders can easily and immediately track the popularity, reception and impact of each of their studies.

“Having built an extensive portfolio of innovations as a technological provider, we are always looking forward to making yet another effort at providing our users with the best-quality experience. The integration of Altmetric data provides us with another opportunity to do exactly this,” says Pensoft’s founder and CEO Prof Lyubomir Penev.

“Furthermore, the science community has long been in need of a more adequate measure of the influence and engagement of individual research outputs, and Altmetric provides this.”

Altmetric’s Founder Euan Adie adds, “We’re excited to see the Altmetric badges being implemented across the ARPHA platform. Helping researchers get credit for their work and demonstrate its reach and influence is a core part of what we do, and this integration provides new opportunities to do so.”

The Altmetric badges and associated details pages are now available for all articles within Pensoft’s journals, as well as the journals using the white-label publishing available from ARPHA.

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Additional information:

About Altmetric:

Altmetric was founded in 2011 and has made it a mission to track and analyze the online activity around scholarly literature. Altmetric tracks what people are saying about research outputs online and works with some of the biggest publishers, funders, and institutions around the world to deliver this data in an accessible and reliable format. Altmetric is supported by Digital Science. Visit http://www.altmetric.com for more information, and follow on Twitter @altmetric.

About ARPHA:

New open access journal Rethinking Ecology publishes novel ideas under Pensoft’s imprint

Needless to say, it is through sharing new ideas and hypotheses that critical issues such as climate change and biodiversity loss can be addressed. However, few scientists are currently in a position to do so, because publishing bold ideas in peer-reviewed journals is very difficult, especially for those who are not world-renowned scientists in their field. At the same time, scientists sharing novel ideas that have not been published yet, carry the risk of being ‘scooped’. This is probably a scientist’s worst nightmare: seeing someone else publish the idea they have been working on. In this context, many innovative ideas are kept secret and it can take years before they are made available to the scientific community.

This is the niche that the novel open access peer-reviewed journal Rethinking Ecology aims to fill by providing a platform for forward thinking and publication of novel ideas in all aspects of ecology, evolution and environmental science.

Adding to its innovative nature, Rethinking Ecology joins the modern technologically advanced Pensoft journals published on next-generation platform ARPHA (abbreviation standing for Authoring, Reviewing, Publishing, Hosting and Archiving). Not only is the platform to provide fast-track and convenient publishing for the authors, reviewers and editors in Rethinking Ecology, as it takes care of a manuscript through all stages from authoring and reviewing to dissemination and archiving, but it is user-friendly to the readers as well, who enjoy publications in three formats (PDF, XML, HTML) and full of semantic enhancements.

The innovative journal aims to encourage all scientists, regardless of their seniority, publication track record, gender, or country of origin, to publish perspective papers, so that they are put in the open for peers to discuss and build on, while credit is given where credit is due. Publishing these ideas early also draws attention from the scientific community, potential collaborators and potential funders. To further avoid potential bias, Rethinking Ecology implements double-blind peer review, with the journal supporting the notion that it is the content of a manuscript that matters. Moreover, reviewers will not be asked for a formal recommendation. Instead, they will comment and evaluate the work against a set of specific questions. Thus, each paper ends up with a score on Novelty, Feasibility, Scholarship and Literacy, so that only perspective papers with an emphasis on novel hypotheses and bold ideas are accepted for publication.

Another innovative feature applied in the new journal is an Author Contribution Index (ACI), meaning that each publication will include a pie chart pointing to the contribution of each of the authors, estimated in percentage. This is the editors’ answer to the so-called ‘guest authorship’ (i.e. inclusion of authors who did not significantly contribute to the work).

It is no coincidence that Rethinking Ecology has a spiral-shaped unfurling fern leaf as a logo. Called Koru in the language of the indigenous Polynesian people of New Zealand – Māori, it symbolises novelty, new life and new beginning, as well as perpetual movement.

“Each publication in Rethinking Ecology can be seen as the beginning of life for a new idea and its metaphorical unfurling as it reaches out to the scientific community,” explain the journal editors in their very first Editorial at Rethinking Ecology.

“We see Rethinking Ecology as an incubator for novel ideas, and a catalyst for new thinking,” says the journal’s Editor-in-Chief Dr Stephane Boyer, Unitec Institute of Technology, New Zealand.

“In a world where scientific publications are increasingly open source and immediately available, it makes no sense to keep our most innovative ideas hidden from the world for years while we secretly test them,” he elaborates. “Bold ideas and new hypotheses need to be shared, they may or may not turn into world-changing paradigm shifts, but they all have the potential to contribute to new thinking.”

“I am pleased to welcome a groundbreaking journal such as Rethinking Ecology to the Pensoft family, which has already built a nice and extensive portfolio of innovations in scholarly publishing,” says Pensoft’s founder and CEO Prof. Lyubomir Penev. “Seeing genuine ideas and hypotheses yet to be tested, and possibly, yet to revolutionise the ecological science is certainly a thing worthy of eager anticipation.”

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About ARPHA:

Business: Theory and Practice journal moves to the ARPHA white label publishing platform

Vilnius Gediminas Technical University and Pensoft launch a new joint pilot project for the open access peer-reviewed journal BTP

In a new joint pilot project, the open access peer-reviewed journal Business: Theory and Practice (BTP), issued by VGTU Press since 2000, runs on the new journal publishing platform ARPHA, developed by Pensoft. ARPHA provides end-to-end technological solution for all peer-review stages starting from submission to fully functional dedicated new website. Publications are also available in semantically enriched HTML and XML formats, as well as the traditional PDF. The journal’s authors and editors enjoy easily manageable peer-review workflow in ARPHA.

Business: Theory and Practice publishes original research articles and reviews that integrate economic development and globalization, interpretations and consequences of entrepreneurship, strategic management and organizational behavior, theoretical questions and empirical questions of industrial organizations. It covers a variety of fields, including business environment, economic development and globalization, entrepreneurial finance, interpretations and consequences of entrepreneurship, strategic management, organizational behavior, theoretical questions and empirical questions of industrial organization, and case studies.

BTP has opted for the ARPHA-DOC publishing workflow, which provides an individually designed website under the imprint and logo of VGTU Press, a document-based article submission, as well as peer review, publication, hosting and dissemination. The manuscripts submitted to BTP will be subject to double-blind peer review.

“It is a great pleasure to work with the Pensoft team on establishing an innovative publishing platform for Business: Theory and Practice. I am sure the new platform will exceed the expectations of all – the authors, the editors and the readers,” says VGTU Press Director Eleonora Dagiene.

“Academic publishing is in a process of disruptive transition. As a result, small journal publishers and society journals are strongly affected and threatened with decline and even extinction. This is because access to high-level publishing technologies is not easy and, in most cases, not affordable. So, we developed ARPHA specially for them! ARPHA is not only an end-to-end journal publishing platform, covering the whole process from website design, authoring, editorial management and peer-review to publishing and dissemination – it also delivers a wide range of easily customizable end-to-end services, on the choice of the journal. I am glad to see Business: Theory and Practice published by VGTU Press as the first Lithuanian journal coming to the ARPHA platform and becoming a member of ARPHA’s growing family of international partners,” says Pensoft’s founder and CEO Prof. Lyubomir Penev.

The articles accepted for the current issue of 2016 in BTP, published via ARPHA, are already available on the journal’s new website.

ARPHA is open to journals looking for a technologically advanced publishing platform plus all associated services, which can be customized to the journal’s preferences.

Next-Generation Journal Publishing Platform ARPHA at Frankfurt Book Fair 2016

Following the launch of our self-developed journal publishing platform ARPHA (standing for Authoring, Reviewing, Publishing, Hosting and Archiving, all happening at one place), we were so happy with the outcome, that we couldn’t help sharing it with the world. Therefore, it’s on offer not only to our own journals and authors, but it’s also at hand to journals looking for their new home. Just let us know you’re interested!

On these lines, what could be a better place to have a chat about the transition in scholarly publishing, open science, research reproducibility and, of course, the advantages of having a journal published on ARPHA, than Frankfurt Book Fair 2016? Between 18th and 23rd October, this immense event will be all about unveiling and celebrating the evolution in the publishing industry, with exhibitors, trade and private visitors from across the globe, gathering together, led by their common expertise and passion.

Meet us at HotSpot Professional and Scientific Information Stage, Hall 4.2, Stand M90, during the Fair, and make sure you don’t miss the “ARPHA: Next-Generation Journal Publishing” presentation at 11:30 AM (local time) on Friday, 21st October, where Pensoft’s Founder and Managing Director Prof Lyubomir Penev will shed more light on the first end-to-end publishing solution, providing everything a journal needs in a technologically advanced, highly efficient and user-friendly manner.

ARPHA in a few notes:

The platform

With ARPHA you can choose between two journal publishing workflows: ARPHA-DOC and ARPHA-XML. The former provides document-based submission for the articles in a journal, as well as peer review and publication. The latter makes use of the ARPHA Writing Tool, which takes all processes, including authoring, peer review and post-publication updates, to an online environment, created with collaboration and openness in mind.

Our services

ARPHA takes care of all the steps that go along with academic publishing and its efficient dissemination, so that it provides a long list of perks to make it easier for the scientific community to bring research to light. Website design, online editorial management system, linguistic editing, semantic markup, promotion and (sub-)article usage metrics are only a part of the services the platform has to offer.

The publishing models

ARPHA basically lets users mix-and-match services and features to create the publishing model that’s the best fit for their journals. How do you envision your imprint / web-design look / manuscript input / peer review process / publication output / revenue model? ARPHA understands your journal’s individual needs and works around them.

Find out more about ARPHA at our talk, or come and meet us at our stand in HotSpot Professional and Scientific Information (Hall 4.2, M90).