Pensoft blog - Part 84

New species of terrestrial crab found climbing on trees in Hong Kong

A new species of terrestrial crab has been found to climb trees on the eastern coast of Hong Kong. All specimens spotted during the survey have been collected at a height of approximately 1.5 – 1.8 m, walking on the bark of the branches at ebbing and low tides. The species is described in the open access journal ZooKeys.

Among the crab’s characteristic traits are squarish predominantly dark brown carapace, very long legs and orange chelipeds. The species is less than a centimetre long, with the studied specimens measuring between 8 and 9 millimetres, irrespective of their sex. However, the chelipeds of the males appear stout, while in females they are distinctly more slender.

The scientists who found the new species (Haberma tingkok), Dr. Stefano Cannicci, the Swire Institute of Marine Science at the University of Hong Kong, and Dr. Peter Ng, National University of Singapore, have placed the new species in a small genus, which now contains merely three species. In fact, Dr. Peter Ng has been involved in the discovery of all of them. He also led the team that established the genus 15 years ago, having collected a small previously undescribed species of mangrove crab from Singapore.

The discovery of the tiny crustacean once again proves how little is known about the diversity of these crabs in Hong Kong. Furthermore, the mangroves that make for the habitat of the new species are under severe impact by both pollution and land reclamation, which underlines the urgent need for their conservation.

Earlier this year, Dr. Peter Ng teamed up with Dr. Jose Christopher Mendoza to describe another new species of crab, collected from the rubble at the island of Guam and named after two of the main characters in J. K. Rowling’s Harry Potter fantasy series.

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Original source:

Cannicci S, Ng PLK (2017) A new species of micro-mangrove crab of the genus Haberma Ng & Schubart, 2002 (Crustacea, Brachyura, Sesarmidae) from Hong Kong. ZooKeys 662: 67-78. https://doi.org/10.3897/zookeys.662.11908

New species of Brazilian copepod suggests ancient species diversification and distribution

A new species of groundwater copepod has been discovered in the rocky savannas of Brazil – an ecosystem suffering from heavy anthropogenic impact. Upon description, the tiny crustacean turned out to also represent a previously unknown genus. It is described by Dr. Paulo H. C. Corgosinho, Montes Claros State University, Brazil, and his team in the open access journal Zoosystematics and Evolution.

Prior to the discovery of the new species, named Eirinicaris antonioi, only one genus of its subfamily (Parastenocaridinae) had been recorded in the Neotropical region, which comes to show that related species had already spread across a huge range when the ancient supercontinent Gondwana split apart.

The new copepod measures about 0,300 mm and can be told apart by its morphological characteristics, including unusual sensorial structures at the rear part of the body, as well as unique sexual dimorphism.

The copepods of the family Parastenocarididae are adapted to life in groundwater, where they thrive between sand grains. These tiny creatures measure less than 1 mm, ranging between 0,200 and 0,400 mm in length. They can be found in various microbiotopes along rivers, lakes and human-made structures, such as dug or artesian wells. Alternatively, these copepods might be associated with mosses and other semi-terrestrial environments.

“This is the first species described from Goiás state, Central Brazil,” explain the authors. “With the discovery of this new species our knowledge about the geographical distribution of the copepod family Parastenocarididae is increased. Our project highlights the vast amounts of undiscovered biodiversity of the Brazilian rocky savannas, which are under high anthropogenic threat.”

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Original source:

Corgosinho PHC, Schizas NV, Previattelli D, Falavigna da Rocha CE, Santos-Silva EN (2017) A new genus of Parastenocarididae (Copepoda, Harpacticoida) from the Tocantins River basin (Goiás, Brazil), and a phylogenetic analysis of the Parastenocaridinae. Zoosystematics and Evolution 93(1): 167-187. https://doi.org/10.3897/zse.93.11602

Topical curcumin gel effective in treating burns and scalds

What is the effect of topical curcumin gel for treating burns and scalds? In a recent research paper, published in the open access journal BioDiscovery, Dr. Madalene Heng, Clinical Professor of Dermatology at the David Geffen School of Medicine, stresses that use of topical curcumin gel for treating skin problems, like burns and scalds, is very different, and appears to work more effectively, when compared to taking curcumin tablets by mouth for other conditions.

“Curcumin gel appears to work much better when used on the skin because the gel preparation allows curcumin to penetrate the skin, inhibit phosphorylase kinase and reduce inflammation,” explains Dr Heng.

In this report, use of curcumin after burns and scalds were found to reduce the severity of the injury, lessen pain and inflammation, and improve healing with less than expected scarring, or even no scarring, of the affected skin. Dr. Heng reports her experience using curcumin gel on such injuries using three examples of patients treated after burns and scalds, and provides a detailed explanation why topical curcumin may work on such injuries.

Curcumin is an ingredient found in the common spice turmeric. Turmeric has been used as a spice for centuries in many Eastern countries and gives well known dishes, such as curry, their typical yellow-gold color. The spice has also been used for cosmetic and medical purposes for just as long in these countries.

In recent years, the medicinal value of curcumin has been the subject of intense scientific studies, with publication numbering in the thousands, looking into the possible beneficial effects of this natural product on many kinds of affliction in humans.

This study published reports that topical curcumin gel applied soon after mild to moderate burns and scalds appears to be remarkably effective in relieving symptoms and improved healing of the affected skin.

“When taken by mouth, curcumin is very poorly absorbed into the body, and may not work as well,” notes Dr. Heng. “Nonetheless, our tests have shown that when the substance is used in a topical gel, the effect is notable.”

The author of the study believes that the effectiveness of curcumin gel on the skin – or topical curcumin – is related to its potent anti-inflammatory activity. Based on studies that she has done both in the laboratory and in patients over 25 years, the key to curcumin’s effectiveness on burns and scalds is that it is a natural inhibitor of an enzyme called phosphorylase kinase.

This enzyme in humans has many important functions, including its involvement in wound healing. Wound healing is the vital process that enables healing of tissues after injury. The process goes through a sequence of acute and chronic inflammatory events, during which there is redness, swelling, pain and then healing, often with scarring in the case of burns and scalds of the skin. The sequence is started by the release of phosphorylase kinase about 5 mins after injury, which activates over 200 genes that are involved in wound healing.

Dr. Heng uses curcumin gel for burns, scalds and other skin conditions as complementary treatment, in addition to standard treatment usually recommended for such conditions.

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Original Source:

Heng M (2017) Phosphorylase Kinase Inhibition Therapy in Burns and Scalds. BioDiscovery 20: e11207. https://doi.org/10.3897/biodiscovery.20.e11207

With flying colors: Top entomology students honoured with wasp species named after them

The highly divergent parasitic wasps have long been causing headaches to scientists. At one point, taxonomists began using some genera as “dumping grounds for unplaced members”, simply to organise the species.

Two entomologists from the University of Kentucky, USA – Drs. Michael J. Sharkey and Eric Chapman, have recently addressed one such issue by describing ten new genera and many more new species and combinations. The resulting paper is published in the open access journal ZooKeys.

Interestingly, among the newly described species there are two wasps named after two excellent entomology students: Leuroagathis paulbakeri and Scabagathis emilynadeauae. Both Mr. Paul Baker and Ms. Emily Nadeau scored 100% during an Entomology class in 2015. Paul passed the written exam with flying colours, while Emily did best on the weekly quizzes.

One of the new genera (Chimaeragathis) is named after the Greek mythological monster Chimera. Known as the sibling of the infamous Cerberus and Hydra, the Hellenes would describe Chimera as a horrid hybrid comprising several animals – usually a lion, a goat, and a serpent. The scientists have picked this name as a reference to the multiple diagnostic characters of the genus. In turn, each of those characters consists of a set of features used to diagnose related genera.

To breed, the females of these wasps lay eggs inside the early stages of caterpillars of various moths. At first, the larva develops quietly as if unnoticed by the host. By the time the caterpillar is ready to spin a cocoon, the parasitoid ‘awakes’ and consumes the host from the inside.

The aim of the present study is to revise the representatives of a tribe of braconid parasitoid wasps inhabiting Southeast Asia with a focus on Thailand. While having described a lot of new taxa, the scientists have saved another batch of new species for a separate future paper.

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Original source:

Sharkey MJ, Chapman E (2017) Ten new genera of Agathidini (Hymenoptera, Braconidae, Agathidinae) from Southeast Asia. ZooKeys 660: 107-150. https://doi.org/10.3897/zookeys.660.12390

Faster, Better, Stronger: New batch of updates now available in ARPHA Writing Tool

Only a couple of months ago, we announced a whole set of exciting features newly applied to ARPHA Writing Tool, based on the feedback we received from our users. Now, we are delighted to announce that we are back with a fresh batch of updates.

Here’s what we recently got in store for all authors in Research Ideas and Outcomes (RIO), Biodiversity Data Journal, One Ecosystem and BioDiscovery, all powered by the innovative end-to-end journal publishing platform ARPHA and making use of the new-age ARPHA Writing Tool:

We have become faster. ARPHA has been optimised, so that it is even easier to prepare your manuscript. Enjoy your references and whole datasets being delivered straight into your draft in the blink of an eye!

Speaking of references, we have updated our Reference Parser. Simply copy-paste a reference in the box and click Parse – ARPHA Writing Tool will have it ready to go on your list momentarily!

Yet, there’s even more to the reference-related updates! To double-check an in-text citation in your manuscript, all you need to do is hover over it to see the full-text reference it is linked to.

Our new toolbar and re-arranged functionalities make up for the better intuitivity of the ARPHA Writing Tool that welcomes you the moment you open a new manuscript.

Hover over the new toolbar and you will notice another new perk we have added for your convenience. Keyboard shortcuts are now implemented to the ARPHA Writing Tool to let you add smart objects as you type.

Get a stronger grip on your figures! Two new buttons let you re-order your figures either by number, or by order of appearance. Alternatively, enter editing mode and simply drag and drop any figure wherever you wish.

We thank you for your continuous feedback which helps us focus on tailoring the ARPHA Writing Tool according to the needs and taste of our clients.

We are already working hard on the next updates, so keep an eye on us!

In the meantime, please feel welcome to test our new features and let us know what you think. We will be happy to address any comments and requests on info@arphahub.com.

Drug resistance of cancer cells crucially affected by expression levels of ABC-transporters

How is drug resistance of cancer cells affected by ABC-transporters? A new research paper, published in the open access journal BioDiscovery, looks at the complex relationship between the second generation of tyrosine kinase inhibitor (TKI) – Dasatinib (DAS), and the expression of ATP-binding cassette (ABC) transporters, ABCB1 and ABCG2, to assess whether these drug transporters might compromise therapeutic effect.

Cancer enabled “targeted” treatment is an effective method with a minimal damage for healthy cells. Targeted therapy brought about a revolution in cancer treatment in the last decades by utilising rationally designed drugs that interfere with specific molecules (molecular targets) essential for proliferation and survival of malignant cells.

While DAS represents excellent choice for the treatment of chronic myeloid leukemia resistant to imatinib, recent laboratory studies suggested that antiproliferative effect of DAS might be significantly reduced when overexpression of the ATP-binding ABC transporters, ABCB1 and ABCG2 comes into the equation.

“Despite the importance of this relationship, it was still unclear whether these drug transporters might compromise therapeutic effect of DAS in clinic,” explains Dr. Petr Mlejnek, Palacky University Olomouc, Czech Republic. “Believing that the drug transporter expression level is a crucial factor that affects the results and thus may help to explain the existing controversy we decided to study relationship between expression levels of ABCB1 and ABCG2 and cell resistance to DAS in vitro.”

In their study Dr. Petr Mlejnek and his team from the Palacky University Olomouc, Czech Republic observed that the expression level of the studied ABC-transporter is an important factor that affects the cell resistance. While the antiproliferative and pro-apoptotic effects of DAS might be reduced by ABCB1 or ABCG2 overexpression at clinically relevant concentration, the actual effect of the studied ABC transporters on DAS efficiency depends on their expression levels. The lower expression levels of ABC transporters mediate lower resistance. Considering the fact that expression levels of ABCB1 and ABCG2 transporters are hardly high in clinical samples, their contribution to the overall resistance to DAS is probably low but significant.

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Additional Information:

This research is published in the open access journal BioDiscovery, as part of the special collection “From Drug Discovery to Clinical Trials” dedicated to outputs from the Second Clinical Sciences and Drug Discovery Conference, which took place in July, in Dundee, Scotland.

The aim of BioDiscovery is to provide a platform for scientists in all areas of biology and medicine to promote, share and discuss new ideas and developments. BioDiscovery considers for publication original, high quality research which contributes significantly for the development of the knowledge in biology and medicine. Articles submitted to BioDiscovery benefit from its broad scope and readership, and dedicated media promotion.

Follow BioDiscovery on Twitter @BioDiscoveryJrn

Original Source:

Mlejnek P, Dolezel P, Ruzickova E (2017) Drug resistance of cancer cells is crucially affected by expression levels of ABC-transporters. BioDiscovery 20: e11211. https://doi.org/10.3897/biodiscovery.20.e11211

New frog from the Peruvian Andes is the first amphibian named after Sir David Attenborough

While there are already a number of species named after famous British broadcaster and naturalist Sir David Attenborough, including mammals, reptiles, invertebrates and plants, both extinct and extant, not until now has the host of the BBC Natural History’s Life series been honoured with an amphibian.

A new fleshbelly frog, recently discovered in the Peruvian Andes, is formally described as Pristimantis attenboroughi, while commonly it is to be referred to as the Attenborough’s Rubber Frog. The new species is published in the open-access journal ZooKeys.

Scientists Dr. Edgar Lehr, Illinois Wesleyan University, and Dr. Rudolf von May, University of Michigan, spent two years (2012-2014) surveying montane forests in central Peru, in order to document the local amphibians and reptiles, and evaluate their conservation statuses. Their efforts have been rewarded with several new species of frogs and a new spectacled lizard.

Each of these discoveries, including the Attenborough’s Rubber Frog, prove how beneficial it is to take into account both morphological and the genetic data, while looking for species new to science. For example, the authors report that when they spotted the P. attenboroughi frog for the first time, both of them were sure that they had found a species of another genus.

The Attenborough’s rubber frog is known to inhabit several localities across the Pui Pui Protected Forest, a nature reserve located at elevations between 3400 and 3936 m a.s.l. in central Peru. The adult males reach size of 14.6-19.2 mm in length, while the females are larger measuring between 19.2 and 23.0 mm. Their ground colour ranges from pale to dark gray, or reddish brown to brownish olive with dark gray scattered flecks. Meanwhile, the juveniles are paler (yellowish to reddish brown) with contrasting dark brown flecks and distinct stripes.

Due to the amphibian being known from fewer than ten localities, spread across less than 20,000 km2, the species should be deemed either Vulnerable or Endangered, according to the IUCN Red List Categories and Criteria. However, the authors suggest that the Attenborough’s Rubber frog should be listed as Near Threatened instead, since the Piu Piu forest is formally protected and still largely unknown, so it is likely that there are more additional populations of the new species. On the other hand, factors such as fungal infections, climate change, pollution, and man-made fires continue to be threats for many Andean amphibians even inside protected areas.

“We dedicate this species to Sir David Frederick Attenborough in honor for his educational documentaries on wildlife, especially on amphibians (e.g., Life in Cold Blood, Fabulous Frogs), and for raising awareness about the importance of wildlife conservation,” explain the authors.

In the present study, the scientists note that there are more terrestrial-breeding frogs from the surveyed montane forests that will be described in the near future.

Among the numerous namesakes of Sir David Attenborough to date, there are a rare genus of beautiful flowering plants, a rare butterfly species, commonly known as the Attenborough’s black-eyed satyr, a flightless weevil species, as well as a number of extinct species.

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Original source:

Lehr E, von May R (2017) A new species of terrestrial-breeding frog (Amphibia, Craugastoridae, Pristimantis) from high elevations of the Pui Pui Protected Forest in central Peru. ZooKeys 660: 17-42. https://doi.org/10.3897/zookeys.660.11394

RAINBIO: a mega database improves knowledge on distribution of vascular plants in tropical Africa

Last November, PhytoKeys published an exciting paper on the launch of the first-of-its kind RAINBIO mega database of tropical African vascular plant distributions.

The publication is part of the RAINBIO project (African RAIN forest community dynamics: implications for tropical BIOdiversity conservation and climate change mitigation, http://rainbio.cesab.org) funded by CESAB (CEntre de Synthèse et d’Analyse sur la Biodiversité) of the FRB (Fondation pour la Recherche sur la Biodiversité, France). Making use of the innovative data paper format, offered by most Pensoft journals, the project announced is key product – a state-of-the-art high quality mega database of vascular plant species distribution across tropical Africa.

The RAINBIO mega database is a response to the limited knowledge of plant species distribution patterns when it comes to the tropical vegetation of Africa. Africa’s vegetation is characterised by high levels of species diversity. However, it is now undergoing important shifts in response to the challenges of ongoing climate change and increasing anthropogenic pressures. To better foster conservation and preservation of ecosystems, basic knowledge about plant species distribution is an important prerequisite.

To compile a comprehensive collection of data, RAINBIO merged large publicly available datasets, in combination with smaller private databases, resulting in a mega database containing 609,776 unique georeferenced records allowing the exploration and extraction of distributional data for 22,577 plant species across continental tropical Africa.

After announcing the database with us at the end of last year, the project published a companion research article providing a state-of-the-art synthesis about our understanding of vascular plant distribution across tropical Africa. The paper, published in BMC Biology concludes that botanical exploration of tropical Africa is far from complete, stressing the importance of continued field inventories and herbarium digitization of past collections.

Analysing this unique dataset provides some important insights into African biodiversity. For example, the observed number of tree species for African forests was smaller than those estimated from global tree data, suggesting that a significant number of species are yet to be discovered. The article also contains a comprehensive list of the total number of plant species for 31 countries across tropical Africa.

The data compiled in the RAINBIO database provides a solid basis for a more sustainable management and improved conservation of tropical Africa’s unique flora, and is important for achieving Objective 1 of the Global Strategy for Plant Conservation 2011–2020.

Original Sources:

Dauby G, et al. (2016) RAINBIO: a mega-database of tropical African vascular plants distributions. PhytoKeys 74: 1-18. https://doi.org/10.3897/phytokeys.74.9723

Sosef M S M, et al. (2016) Exploring the floristic diversity of tropical Africa. BMC Biology 15:15. https://doi.org/10.1186/s12915-017-0356-8

Portuguese moth’s mystery solved after 22 years

An unknown moth, collected from Portugal 22 years ago, has finally been named and placed in the tree of life thanks to the efforts of an international team of scientists. The moth was unambiguously placed in the family of geometer moths (Geometridae), commonly known as loopers or inchworms due to the characteristic looping gait of their larvae.

The new species description is published in the open access journal Nota Lepidopterologica, along with a taxonomic review of the genus Ekboarmia, thought to comprise four species in the western Mediterranean area.

The first specimen, a male, was found in 1995 in Lagoa de Santo André, south of Lisbon, near the Atlantic coast. Despite its unique appearance, the specialists did not find enough similarities with any other European species, making its classification impossible. When three females were finally found following an intensive search in 2009, the team of scientists hoped they would find enough evidence to solve the mystery.

“The discovered females had different wing patterns compared to the males, suggesting sexual dimorphism, adding another complexity in the identification. This new species could not have been classified on the basis of external characters alone,” explains Dieter Stüning from Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany.

In 2015, two specimens, a male and a female, have been DNA barcoded and recently became targets of detailed morphological examinations. DNA data played an essential role in demonstrating that the male and the female belong to the same species, whereas morphological structures finally provided unambiguous evidence to place the mystery moth in the geometrid genus Ekboarmia. The species name miniaria seemed appropriate to denote its small size. The tiny moth is the smallest in its genus whose other species are externally dissimilar.

Peder Skou from Denmark played a central role in the discovery of the species, tirelessly searching for more material to solve the questions. “Discovery of an undescribed and distinct macromoth from Europe is a rare occasion, because the continent’s fauna is probably the most exhaustively studied in the world,” explains Skou.

Pasi Sihvonen from the Finnish Museum of Natural History concludes: “Virtually nothing is known about the species. Altogether, only 11 specimens have been found between 1995 and 2011. Larvae of related species feed on juniper needles, which might also be the foodplant of the new species. We hope that the richly illustrated publication of the new moth will lead to new discoveries of this mysterious species. More data are needed, for instance, its conservation status cannot be evaluated due to insufficient life history and distribution data.”

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Original source:

Skou P, Stüning D, Sihvonen P (2017) Revision of the West-Mediterranean geometrid genus Ekboarmia, with description of a new species from Portugal (Lepidoptera, Geometridae, Ennominae). Nota Lepidopterologica 40(1): 39-63. https://doi.org/10.3897/nl.40.10440

Shadow-loving insect named after Tuomas Holopainen of Nightwish

Tuomas Holopainen, the multi-talented musician and founder of the symphonic metal band Nightwish, is also a full-blooded nature person. This gave conservation biologist Jukka Salmela of Metsähallitus Parks & Wildlife Finland an idea for the name of a new species he found in Finland. Discovered in eastern Lapland during an insect survey, the fungus gnat was given the scientific name Sciophila holopaineni after Tuomas. The new species is described in the open access Biodiversity Data Journal.

“I am very, very touched. This is the highest honour a nature nerd like me can receive,” Tuomas Holopainen replied after Jukka, who collected and described the fungus gnat, asked him for permission to name the species after him.

The idea for the name came up to Salmela while he was thinking about the habitat and appearance of the species. Then, he recalled Tuomas Holopainen’s interest in the natural sciences.

So far, the new species of fungus gnat has been only known from two locations: the Törmäoja Natura Area in Savukoski, eastern Lapland, and a meadow close to the White Sea, Russian Karelia.

The dark and beautiful gnat thrives in shadowy environments. In Törmäoja, it was caught in a river gulch next to the river source, while hiding under the shelter of the forest. Salmela proposes ‘tuomaanvarjokainen’ as the common Finnish name, inspired by the latest Nightwish album. After all, the themes of the album, Endless Forms Most Beautiful, are evolution and the diversity of nature.

Fungus gnats are flies, which feed on dead wood or fungi. Some of the larvae are predaceous. At current count, there are almost 800 species in Finland and about 1,000 in the Nordic countries. In fact, the Fennoscandia region is one of Europe’s biodiversity hotspots for this group of insects.

The Tuomas Holopainen’s species is only one of the eight new flies described in the study. Among them are the Boletina norokorpii fungus gnat, named after Docent Yrjö Norokorpi and known only from Ylitornio; Phronia reducta, which inhabits Salla and Siberia; and Orfelia boreoalpina found in Törmäoja and the German Alps.

The Parks & Wildlife Finland of Metsähallitus is responsible for the management and species surveys of the State’s nature reserves. The collected data is needed in activities such as assessing the status of biodiversity, the protection of species, and planning the management and use of the reserves. Insects are as good an indicator of the state of the natural environment as better-known vertebrates or plants. The diversity of insect species forms part of natural biodiversity and is necessary to human well-being.

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Original source:

Salmela J, Kolcsár L (2017) New and poorly known Palaearctic fungus gnats (Diptera, Sciaroidea). Biodiversity Data Journal 5: e11760. https://doi.org/10.3897/BDJ.5.e11760