Author: Pensoft Editorial Team

Rare, protected orchid thrives in a military base in Corsica

Counting over 155,000 individuals, the population is a world precedent. Globally, this orchid can only be found in the south of France, Italy, and along the east coast of the Adriatic.

In Corsica, away from the eyes of locals and tourists, hides a population of unprecedented proportions of a rare and protected orchid: the neglected Serapias (Serapiasneglecta). In a closed military base in the east of the island, researchers discovered 155,000 individuals of the plant.

Globally, this orchid can only be found in the south of France (including Corsica), Italy, and along the east coast of the Adriatic, but none of its known populations has been as abundant as the one documented in Solenzara.

High density of Serapias neglecta on the air base. Photo by Margaux Julien (Ecotonia)

Margaux Julien, Dr Bertrand Schatz, Simon Contant, and Gérard Filippi, researchers from the Center of Functional Ecology and Evolution (CEFE) and Ecotonia consultancy,came across this population while studying plant diversity in the Solenzara air base. Their research, published in Biodiversity Data Journal, documented impressive plant richness, including 12 other orchid species.

The maintenance of the closed military area turned out to be really favourable to the development of orchids. The flower was abundant around the edges of runways and on lawns near military buildings.

Serapias neglecta. Photo by Margaux Julien (Ecotonia)

“Мilitary bases are important areas for biodiversity because they are closed to the public, are not heavily impacted and these areas have soils that are often poorly fertilised and untreated due to old installations, so they often have high biodiversity,” the researchers say in their study.

The meadows around the airport are regularly mowed for security reasons, which allows orchids to thrive in a low vegetation environment with little competition. In addition, the history of the land with its position on the old Travo river bed favours low vegetation, providing rocky ground just a few centimetres beneath the soil.

“The case of S. neglecta is particularly remarkable, because this species benefits from a national protection status and it is a sub-endemic species with a very localised distribution worldwide,” the research team writes. Moreover, the species is classified as near threatened in the World and European Red Lists of the International Union for Conservation of Nature.

The Ecotonia consultancy also did several inventories on the air base, finding biodiversity of rare richness: 552 species of plants, including 19 with protected status in France. Within only 550 ha, they found 23% of the plant species distributed in Corsica. Among these are some very rare plants, as well as endangered species such as the gratiole (Gratiola officinalis) and Anthemis arvensis subsp. incrassate, a subspecies of the corn chamomile.

Serapias neglecta. Photo by Bertrand Schatz

The Solenzara military base hides rich floristic diversity thanks to its history, management, and the lack of public access. While the Corsican coastline is suffering from urbanisation, this sector is a testament to the local flora, featuring several species with conservation status.

The protection of this richness is crucial. “If logistical developments are carried out on this base, they will have to favour the conservation of this exceptional floristic biodiversity, and, in particular of this particularly abundant orchid. Military bases are a great opportunity for the conservation of species and would benefit from enhancing their natural heritage,” the researchers conclude.

Research article:

Julien M, Schatz B, Contant S, Filippi G (2022) Flora richness of a military area: discovery of a remarkable station of Serapias neglecta in Corsica. Biodiversity Data Journal 10: e76375. https://doi.org/10.3897/BDJ.10.e76375

Frog with tapir-like nose found in Amazon rainforest

The people of Peru’s Comunidad Nativa Tres Esquinas have long known about a tiny, burrowing frog with a characteristically long snout. Yet, until now, this species has remained elusive to biologists.

The people of Peru’s ​​Comunidad Nativa Tres Esquinas have long known about a tiny, burrowing frog with a long snout; one local name for it is rana danta, “tapir frog” for its resemblance to the large-nosed Amazonian mammal. But until now, this frog has remained elusive to biologists. Thanks to the help of local guides, an international team of researchers was able to find the frog and give it an official scientific name and description.

It’s an example of the Amazon’s hidden diversity, and it’s important to document it to understand how important the ecosystem functions.

Michelle Thompson, researcher in the Keller Science Action Center at Chicago’s Field Museum

“These frogs are really hard to find, and that leads to them being understudied,” says Michelle Thompson, a researcher in the Keller Science Action Center at Chicago’s Field Museum and one of the authors of a study describing the frog in Evolutionary Systematics. “It’s an example of the Amazon’s hidden diversity, and it’s important to document it to understand how important the ecosystem functions.”

“Frogs of this genus are spread throughout the Amazon, but since they live underground and can’t get very far by digging, the ranges each species is distributed in are fairly small. Since we found this new species in Amazon peatland, it wouldn’t be strange for it to be restricted to this environment. Its body shape and general look seems to be adapted to the soft soil of the peatland, rather than the robust and wider shape of species in other environments,”says Germán Chávez, a researcher at Peru’s Instituto Peruano de Herpetología and the study’s first author.

Synapturanus danta. Photo provided by Field Museum

The tapir frog’s appearance is striking. “It looks like a caricature of a tapir, because it has a big blobby body with this tiny little pointy head,” says Thompson. But despite its goofy appearance, it was very difficult to find. “The frogs are tiny, about the size of a quarter, they’re like brown, they’re underground, and they’re quick,” she says. “You know these little frogs are somewhere underground, but you just don’t see them hopping around.”

But while the frogs are hard to see, they’re not hard to hear. “We just kept hearing this beep-beep-beep coming from underground, and we suspected it could be a new species of burrowing frog because there had recently been other species in its genus described,” says Thompson. “But how do we get to it?”

Local guides who were familiar with the frogs led the researchers to peatland areas– wetlands carpeted with nutrient-rich turf made of decaying plant matter. The team searched by night, when the frogs were most active. 

“After 15 to 20 minutes of digging and looking for them, I heard Michelle screaming, and to me that could only mean that she and David had found the first adult,” says Chavez.

“We could hear them underground, going beep-beep-beep, and we’d stop, turn off our lights, and dig around, and then listen for it again,” says Thompson. “After a few hours, one hopped out of his little burrow, and we were screaming, ‘Somebody grab it!’”

Synapturanus danta. Photo by Germán Chávez

In addition to finally finding adult specimens of the frogs, the team recorded their calls. “I am obsessed with recording frog calls, so I decided to record the call first and then continue digging,” says Chávez.

The researchers used the physical specimens of the frogs, along with the recordings of their calls and an analysis of the frogs’ DNA, to confirm that they were a new species. They named them Synapturanus danta– Synapturanus is the name of the genus they belong to, and danta is the local word for “tapir.”

The frogs’ burrowing behavior that made them hard to find likely makes them an important part of their peatland home. “They’re part of the underground ecosystem,” says Thompson. “They’re moving down there, they’re eating down there, they’re laying their eggs down there. They contribute to nutrient cycling and changing the soil structure.”

“Beside the important role of this new species in the food chain of its habitat, we believe that it could be an indicator of healthy peatlands,” says Chávez. “First, we have to confirm whether it’s restricted to this habitat, but its body adaptations seem to point in that direction. For instance, if the habitat is too dry, the soil would become too hard for a non-robust frog like this one to dig. This would leave our frog with far fewer chances to find a shelter and eventually, it would be hunted by a bigger predator. So I think possibilities that this frog would be a wetlands specialist are high, but still need to go further in this research to confirm it.”

Panoramic view of the type locality. Photo by Alvaro del Campo

And the study’s implications go beyond the description of one little frog. S. danta was found during a rapid inventory led by Field Museum scientists, a program in which biologists and social scientists spend a few weeks in a patch of the Amazon to learn what species live there, how the people in the area manage the land, and how they can help make a case for the area to be protected. “Even though it’s called a rapid inventory, it could take a year or more to plan these things, and then it could take a year or a decade to do the conservation follow-up,” says Thompson. “The rapid part is where you spend a month in the field. And it’s a total whirlwind.”

A view of the landscape in the Amazonian Peatlands inhabited by Synapturanus danta. Photo by Luis Montenegro

Peru’s Putumayo Basin, where this rapid inventory took place, is part of a larger conservation scheme by the Keller Science Action Center and its partners. “The Putumayo Corridor spans from Ecuador, Colombia, Peru, and down to Brazil, following the Putumayo River,” says Thompson. “There’s very little deforestation, and it’s also one of the last free flowing rivers that has no current dams. There’s like a huge conservation opportunity to conserve the whole corridor, watershed and surrounding areas. This tapir frog is another piece of evidence of why scientists and local people need to work together to protect this region.”

Research article:

Chávez G, Thompson ME, Sánchez DA, Chávez-Arribasplata JC, Catenazzi A (2022) A needle in a haystack: Integrative taxonomy reveals the existence of a new small species of fossorial frog (Anura, Microhylidae, Synapturanus) from the vast lower Putumayo basin, Peru. Evolutionary Systematics 6(1): 9-20. https://doi.org/10.3897/evolsyst.6.80281

Simplified method to survey amphibians will aid conservation

Researchers developed a method to determine which amphibians inhabit a specific area. The new technique will resolve some of the issues with conventional methods, such as capture and observational surveys.

Ryukyu Sword Tailed Newt, or Firebellied Newt. Photo by Neil Dalphin via Creative Commons CC0.

An international collaborative research group of members from seven institutions has developed a method to determine which amphibians (frogs, newts and salamanders) inhabit a specific area. Their work was published in the open-access, peer-reviewed journal Metabarcoding and Metagenomics (MBMG).

To do so, the scientists amplified and analysed extra-organismal DNA (also known as environmental DNA or eDNA) found in the water. This DNA ends up in the water after being expelled from the amphibian’s body along with mucus and excrement. 

The research group included Postdoctoral Researcher Sakata K. Masayuki and Professor Minamoto Toshifumi (Kobe University), Associate Professor Kurabayashi Atsushi (Nagahama Institute of Bio-Science and Technology), Nakamura Masatoshi (IDEA Consultants, Inc.) and Associate Professor Nishikawa Kanto (Kyoto University). 

The newly developed technique will resolve some of the issues with conventional methods, such as capture and observational surveys, which require a specialist surveyor who can visually identify species. Conventional surveys are also prone to discrepancies due to environmental factors, such as climate and season.

The researchers hope that the new method will revolutionise species monitoring, as it will enable anyone to easily monitor the amphibians that inhabit an area by collecting water samples.  

While monitoring in general is crucial to conserve the natural ecosystems, the importance of surveying amphibians is even more pressing, given the pace of their populations’ decline.

Amongst major obstacles to amphibian monitoring, however, are the facts that they are nocturnal; their young (e.g. tadpoles) and adults live in different habitats; and that specialist knowledge is required to capture individuals and identify their species. These issues make it particularly difficult to accurately survey amphibians in a standardised way, and results of individual efforts often contradict each other.

On the other hand, eDNA analysis techniques have already been established in programmes targeted at monitoring fish species, where they are already commonplace. So, the researchers behind the present study joined forces to contribute towards the development of a similar standardised analysis method for amphibians.

First of all, the researchers designed multiple methods for analysing the eDNA of amphibians and evaluated their performance to identify the most effective method. Next, they conducted parallel monitoring of 122 sites in 10 farmlands across Japan using the developed eDNA analysis along with the conventional methods (i.e. capture surveys using a net and observation surveys). 

As a result, the newly developed method was able to detect all three orders of amphibians: Caudata (the newts and salamanders), Anura (the frogs), and Gymnophiona (the caecilians). 

Furthermore, this novel eDNA analysis method was able to detect more species across all field study sites than the conventional method-based surveys, indicating its effectiveness.

Research Background

Amphibian biodiversity is continuing to decline worldwide and collecting basic information about their habitats and other aspects via monitoring is vital for conservation efforts. Traditional methods of monitoring amphibians include visual and auditory observations, and capture surveys.

However, amphibians tend to be small in size and many are nocturnal. The success of surveys varies greatly depending on the climate and season, and specialist knowledge is required to identify species. Consequently, it is difficult to monitor a wide area and assess habitats. The last decade has seen the significant development of environmental DNA analysis techniques, which can be used to investigate the distribution of a species by analysing external DNA (environmental DNA) that is released into the environment along with an organism’s excrement, mucus and other bodily fluids. 

The fundamentals of this technique involve collecting water from the survey site and analysing the eDNA contained in it to find out which species inhabit the area. In recent years, the technique has gained attention as a supplement for conventional monitoring methods. Standardised methods of analysis have already been established for other species, especially fishes, and diversity monitoring using eDNA is becoming commonplace. 

However, eDNA monitoring of amphibians is still at the development stage. One reason for this is that the proposed eDNA analysis method must be suitable for the target species or taxonomic group, and there are still issues with developing and implementing a comprehensive method for detecting amphibians. If such a method could be developed, this would make it possible for monitoring to be conducted even by people who do not have the specialised knowledge to identify species nor surveying experience.

Hopefully, this would be established as a unified standard for large-scale monitoring surveys, such as those on a national scale. This research group’s efforts to develop and evaluate analysis methods will hopefully lay the foundations for eDNA analysis to become a common tool for monitoring amphibians, as well as fish. 

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Follow Metabarcoding and Metagenomics (MBMG) journal on Twitter and Facebook.

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Research article: 

Sakata MK, Kawata MU, Kurabayashi A, Kurita T, Nakamura M, Shirako T, Kakehashi R, Nishikawa K, Hossman MY, Nishijima T, Kabamoto J, Miya M, Minamoto T (2022) Development and evaluation of PCR primers for environmental DNA (eDNA) metabarcoding of Amphibia. Metabarcoding and Metagenomics 6: e76534. https://doi.org/10.3897/mbmg.6.76534

Study ranks potentially harmful invasive species in Ghana

Scientists ranked the 110 arthropod and 64 pathogenic species posing the greatest potential threat to the country if established.

A CABI-led study has conducted a comprehensive survey of nearly 200 potentially harmful alien plant species that could have a detrimental impact upon agriculture, forestry and biodiversity in Ghana once they enter the country.

Invasive Alien Species (IAS) continue to shape the global landscape through their effects on biological diversity and agricultural productivity. The effects are particularly pronounced in Sub-Saharan Africa, which has seen the arrival of many IAS in recent years. This has been attributed to porous borders, weak cross border biosecurity, and inadequate capacity to limit or stop invasions.

A farmer shows cassava root affected by cassava brown streak virus alongside a healthy root in a country where the disease is present – one of the 64 pathogens assessed by the scientists. Credit: CABI

The research, the findings of which are published in the journal NeoBiota, ranks 110 arthropod and 64 pathogenic species that pose the greatest threat but are not yet officially present in the country. However, they could arrive as ‘stowaways’ in cargo from other countries around the world, the scientists believe.

Dr Marc Kenis, Head Risk Analysis and Invasion Ecology at CABI, led on the horizon scanning exercise supported by colleagues from a range of institutions including Ghana’s Plant Protection and Regulatory Services Directorate (PPRSD).

Among the top arthropods prioritised by Dr Kenis and his team were the pink hibiscus mealybug (Maconellicoccus hirsutus Green) and melon thrips (Thrips palmi Karny) while the top pathogens highlighted include cassava brown streak virus and Maize lethal necrosis disease.

Cassava in Ghana, for example, is a main staple crop and contributes about 22% and 30% to the Agricultural Gross Domestic Product (AGDP) and daily calories intake respectively. The crop, however, can be at risk from cassava brown streak virus which can reduce yields by up to 70%.

Maize lethal necrosis disease, on the other hand for instance, can be a major disruptor of maize crops in Ghana where maize accounts for more than 50% of the country’s total cereal production. The disease can cause losses of between 50-90% depending on the variety of maize and the growing conditions of the year.

The scientists also found other species recorded in Africa that included 19 arthropod and 46 pathogenic species which were already recorded in the neighbouring countries of Burkina Faso, Côte d’Ivoire, and Togo.

Dr Kenis, who is based at CABI’s centre in Switzerland, said, “The ultimate objective of this research was to enable prioritization of actions including pest risk analysis, prevention, surveillance and contingency plans. Prioritisation was carried out using an adapted version of horizon scanning and consensus methods developed for ranking IAS worldwide.

“We have demonstrated that through horizon scanning, a country can identify potential invasive plant pests, both invertebrates and pathogens, and use the information to determine the risk associated with each.

“This will enable the country to invest the limited resources in priority actions such as preventing arrival and establishment of IAS, Pest Risk Analysis (PRA), surveillance and developing contingency plans.

“This study can serve as a model for future projects on plant pests’ prioritisation in Africa and elsewhere. It would be applicable for assessing the risk of invasive plant pests in any country or region, e.g. trade blocks, with minor modifications of the method, particularly in the mini-PRA protocol used to score species.”

The full lists of arthropod and pathogenic species surveyed can be found within the full paper which can be read online.

Mr Prudence Attipoe, Deputy Director Head Plant Quarantine Division, PPRSD, said, “The horizon scanning exercise for Ghana would give the PPRSD an insight into invasive pests which could possibly enter the Nation. The tool is timely and appropriate for conducting PRA for planning, training and future preparedness. The success of this exercise would pre-empt the introduction of these invasive pests into the country in order to protect Ghana’s agriculture, forestry and also cause staff of PPRSD to be more vigilant at the borders for these pests.”

Research paper:

Kenis M, Agboyi LK, Adu-Acheampong R, Ansong M, Arthur S, Attipoe PT, Baba A-SM, Beseh P, Clottey VA, Combey R, Dzomeku I, Eddy-Doh MA, Fening KO, Frimpong-Anin K, Hevi W, Lekete-Lawson E, Nboyine JA, Ohene-Mensah G, Oppong-Mensah B, Nuamah HSA, van der Puije G, Mulema J (2022) Horizon scanning for prioritising invasive alien species with potential to threaten agriculture and biodiversity in Ghana. NeoBiota 71: 129 148. https://doi.org/10.3897/neobiota.71.72577

How to get people interested in invasive species?

While blacklists are an effective tool for preventing and managing new biological invasions, they don’t always raise public awareness of invasive alien species, a new study published in the open-access journal NeoBiota found. Important policy-making initiatives do not necessarily raise public awareness about biological invasions, and efforts should be more focused on supporting policy-making with well-planned communication campaigns, the research concludes.

Catchy news and viral videos work best to attract public attention to invasive alien species

Blacklists are one of the most common policy measures to limit biological invasions. They identify small groups of highly impactful invasive alien species: species introduced outside their native range that threaten biodiversity. By doing so, they inform key decision-makers, who then impose limitations or bans on their trade and introduction, or set requirements about specific actions to manage already established populations.

While they have been found to be effective at preventing and managing new biological invasions, we don’t know if blacklists actually raise public awareness of invasive alien species. In principle, they could do so, as they might attain a certain echo in the media and provide the general public with notorious examples of invasive alien species.

Coypu. Photo by Aurelio Perrone

In 2016, the European Union published the List of Invasive Alien Species of Union concern, which contains species that are banned from import, trade, and release in Europe. It had a certain echo in the media, and having come at a time where Internet searches are so pervasive that they can be used to measure public attention,  the Union List made a good case study for exploring blacklist impact on public awareness.

Grey squirrels. Photos by Sandro Bertolino

A research study, coordinated by Jacopo Cerri from the University of Primorska, Slovenia, and Sandro Bertolino from the University of Turin, Italy, explored if the publication of the Union List increased visits of the  Italian Wikipedia pages about invasive alien mammals, many of which were included in the list. Wikipedia is the largest online encyclopedia and a major source of information for motivated Internet users who go beyond search engines such as Google. As a comparison, the researchers used visits to Wikipedia pages about native mammals in Italy, and adopted a causal impact analysis to quantify differences.

The study found no effect of the publication of the Union lists over visits to Italian Wikipedia pages of invasive alien mammals, compared to pages about native mammals. After 2016, there were single peaks of visits to pages of some of the species, probably caused by viral videos and news about large-scale control initiatives or mass escapes from captivity. In one instance, peaks in visits aligned with news about the coypu – at the time, several national media outlets ran stories addressing the concerns of public administrations regarding the rodent’s impact on the stability of river banks. Similarly, a peak observed between late 2018 and February 2019 was likely caused by news about the release of 4,000 minks from a fur factory in Northern Italy, which attracted considerable attention in the national and regional media.

These attention peaks, however, did not last in time and don’t reflect a systematic change in public awareness about invasive alien species.

“Overall, our findings indicate that blacklists, despite having the potential to raise public awareness towards biological invasions, might fail to do so in practice,” the researchers conclude.

“Agencies who want to achieve this goal should rather develop tailored communication campaigns, or leverage on sensational news published in the media.”
 

Research article:

Cerri J, Carnevali L, Monaco A, Genovesi P, Bertolino S (2022) Blacklists do not necessarily make people curious about invasive alien species. A case study with Bayesian structural time series and Wikipedia searches about invasive mammals in Italy. NeoBiota 71: 113-128. https://doi.org/10.3897/neobiota.71.69422

Natural History Museum of Berlin’s journal Fossil Record started publishing on ARPHA Platform

Fossil Record – the paleontological scholarly journal of the Natural History Museum of Berlin (Museum für Naturkunde Berlin) published its first articles after moving to the academic publisher Pensoft and its publishing platform ARPHA Platform in late 2021. The renowned scientific outlet – launched in 1998 – joined two other historical journals owned by the Museum: Deutsche Entomologische Zeitschrift and Zoosystematics and Evolution, which moved to Pensoft back in 2014.

Fossil Record – the paleontological scholarly journal of the Natural History Museum of Berlin (Museum für Naturkunde Berlin) published its first articles after moving to the academic publisher Pensoft and its publishing platform ARPHA in late 2021. The renowned scientific outlet – launched in 1998 – joined two other historical journals owned by the Museum: Deutsche Entomologische Zeitschrift and Zoosystematics and Evolution, which moved to Pensoft back in 2014.

Published in two issues a year, the open-access scientific outlet covers research from all areas of palaeontology, including the taxonomy and systematics of fossil organisms, biostratigraphy, palaeoecology, and evolution. It deals with all taxonomic groups, including invertebrates, microfossils, plants, and vertebrates.

As a result of the move to ARPHA, Fossil Record utilises the whole package of ARPHA Platform’s services, including its fast-track, end-to-end publishing module, designed to appeal to readers, authors, reviewers and editors alike. A major advantage is that the whole editorial process, starting from the submission of a manuscript and continuing into peer review, editing, publication, dissemination, archiving and hosting, happens within the online ecosystem of ARPHA. 

As soon as they are published, the articles in Fossil Record are available in three formats: PDF, machine-readable JATS XML and semantically enriched HTML for better and mobile-friendly reader experience. 

The publications are equipped with real-time metrics on both article and sub-article level that allow easy access to the number of visitors, views and downloads for every article and each of it’s figures, tables or supplementary materials. In their turn, the semantic enhancements do not only allow for easy navigation throughout the text and quick access to cited literature and the article’s own citations, but also tag each taxon that appears in the paper to provide links to further information concerning its occurrences, genomics, nomenclature, treatments and more as available from various databases.      

The first five papers – now available on the brand new journal website powered by ARPHA – already demonstrate the breadth of topics covered by Fossil Record, including systematics, paleobiogeography, palaeodiversity and morphology, as well as the international appeal of the scholarly outlet. The articles are co-authored by collaborative research teams representing ten countries and spanning three continents: Europe, Asia and Africa.

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About the Natural History Museum of Berlin:

The “Museum für Naturkunde – Leibniz Institute for Evolution and Biodiversity Science” is an integrated research museum within the Leibniz Association. It is one of the most important research institutions worldwide in the areas of biological and geological evolution and biodiversity.

The Museum’s mission is to discover and describe life and earth – with people, through dialogue. As an excellent research museum and innovative communication platform, it wants to engage with and influence the scientific and societal discourse about the future of our planet, worldwide. Its vision, strategy and structure make the museum an excellent research museum. The Natural History Museum of Berlin has research partners in Berlin, Germany and approximately 60 other countries. Over 700,000 visitors per year as well as steadily increasing participation in educational and other events show that the Museum has become an innovative communication centre that helps shape the scientific and social dialogue about the future of our earth. 

Cultivated and wild bananas in northern Viet Nam threatened by а devastating fungal disease

For over 100 years, Fusarium, one of the most important fungal plant pathogens, has affected banana production worldwide.

Fusarium is one of the most important fungal plant pathogens, affecting the cultivation of a wide range of crops. All over the world, thousands of farmers suffer agricultural losses caused by Fusarium oxysporum f. sp. cubense (referred to as Foc for short), which directly affects their income, subsistence, and nourishment.

As a soil-borne fungus, Foc invades the root system, from where it moves into the vascular tissue that gradually deteriorates, until eventually the plant dies. What makes it particularly hard to deal with is that, even 20 years after all infected plants and tissue are removed, spores of it still remain in the soil.

One industry significantly affected by Foc is global banana export, largely dependent on the cultivation of members of the Cavendish subgroup, which are highly susceptible to some of the Foc strains.

For over 100 years, the fungus has affected banana production worldwide. Researchers predict it will continue spreading intensively in Asia, affecting important banana-producing countries such as China, the Philippines, Pakistan, and Viet Nam.

For Viet Nam, predictions on the impact of Foc for the future are dramatic: an estimated loss in the banana production area of 8% within the next five years, and up to 71% within the next 25 years. In particular, the recent rise of the novel TR4 strain has resulted in worldwide anxiety about the future of the well-known Cavendish banana and many other cultivars. Fusarium oxysporum f. sp. cubense is, however, not limited to TR4 or other well-known strains, like Race 1 or Race 2; it is a species complex that plant pathologists are yet to fully disentangle. 

In Viet Nam, like in the rest of Asia, Africa, Latin America, and the Caribbean, most bananas are consumed and traded locally, supporting rural livelihood. This means that any reduction in crop harvest directly affects local people’s income and nourishment. 

It has thus become necessary to find out what are the individual species causing the Fusarium wilt among Vietnamese bananas. Only by understanding which species are infecting the cultivated bananas can concrete measures be taken to control the future spreading of the disease to other regions.

Using DNA analyses and morphological characterization, an international team of researchers from Viet Nam (Plant Resources Center, Vietnam National University of Agriculture), Belgium (Meise Botanic Garden, KU Leuven, Bioversity Leuven, MUCL) and the Netherlands (Naturalis Biodiversity Center) investigated the identity of the Fusarium wilt infections. They recently published their joint research in the open-access, peer-reviewed journal MycoKeys.

The study shows that approximately 3 out of 4 Fusarium infections of the northern Vietnamese bananas are caused by the species F. tardichlamydosporum, which can be regarded as the typical Race 1 infections. Interestingly, Foc TR4 is not yet a dominant strain in northern Viet Nam, as the species causing the disease – F. odoratissimum – only accounts for 10% of the Fusarium infections. A similar proportion of Fusarium infections is caused by the species Fusarium cugenangense – considered to cause Race 2 infections among bananas.More importantly, Fusarium wilt was not only found in cultivated bananas: the disease seemed to also affect wild bananas. This finding indicates that wild bananas might function as a sink for Fusarium wilt from where reinfections towards cultivars could take place.

Research article:

Le Thi L, Mertens A, Vu DT, Vu TD, Anh Minh PL, Duc HN, de Backer S, Swennen R, Vandelook F, Panis B, Amalfi M, Decock C, Gomes SIF, Merckx VSFT, Janssens SB (2022) Diversity of Fusarium associated banana wilt in northern Viet Nam. MycoKeys 87: 53-76. https://doi.org/10.3897/mycokeys.87.72941

Call for data papers describing datasets from Northern Eurasia in Biodiversity Data Journal

In collaboration with the Finnish Biodiversity Information Facility (FinBIF) and Pensoft Publishers, GBIF has announced a new call for authors to submit and publish data papers on Russia in a special collection of Biodiversity Data Journal (BDJ). The call extends and expands upon a successful effort in 2020 to mobilize data from European Russia.

GBIF partners with FinBIF and Pensoft’s Biodiversity Data Journal to streamline publication of new datasets about biodiversity from Northern Eurasia

Original post via GBIF

In collaboration with the Finnish Biodiversity Information Facility (FinBIF) and Pensoft Publishers, GBIF has announced a new call for authors to submit and publish data papers on Northern Eurasia in a special collection of Biodiversity Data Journal (BDJ). The call expands upon successful efforts to mobilize data from European Russia in 2020 and from the rest of Russia in 2021.

Until 30 June 2022, Pensoft will waive the article processing fee (normally €650) for the first 50 accepted data paper manuscripts that meet the following criteria for describing a dataset:

See the complete definition of these terms below.

Detailed instructions

Authors must prepare the manuscript in English and submit it in accordance with BDJ’s instructions to authors by 30 June 2022. Late submissions will not be eligible for APC waivers.

Sponsorship is limited to the first 50 accepted submissions meeting these criteria on a first-come, first-served basis. The call for submissions can therefore close prior to the deadline of 30 June 2022. Authors may contribute to more than one manuscript, but artificial division of the logically uniform data and data stories, or “salami publishing”, is not allowed.

BDJ will publish a special issue including the selected papers by the end of 2021. The journal is indexed by Web of Science (Impact Factor 1.225), Scopus (CiteScore: 2.0) and listed in РИНЦ / eLibrary.ru.

For non-native speakers, please ensure that your English is checked either by native speakers or by professional English-language editors prior to submission. You may credit these individuals as a “Contributor” through the AWT interface. Contributors are not listed as co-authors but can help you improve your manuscripts. BDJ will introduce stricter language checks for the 2022 call; poorly written submissions will be rejected prior to the peer-review process.

In addition to the BDJ instruction to authors, data papers must referenced the dataset by
a) citing the dataset’s DOI
b) appearing in the paper’s list of references
c) including “Northern Eurasia 2022” in the Project Data: Title and “N-Eurasia-2022“ in Project Data: Identifier in the dataset’s metadata.

Authors should explore the GBIF.org section on data papers and Strategies and guidelines for scholarly publishing of biodiversity data. Manuscripts and datasets will go through a standard peer-review process. When submitting a manuscript to BDJ, authors are requested to assign their manuscript to the Topical Collection: Biota of Northern Eurasia at step 3 of the submission process. To initiate the manuscript submission, remember to press the Submit to the journal button.

To see an example, view this dataset on GBIF.org and the corresponding data paper published by BDJ.

Questions may be directed either to Dmitry Schigel, GBIF scientific officer, or Yasen Mutafchiev, managing editor of Biodiversity Data Journal.

This project is a continuation of successful calls for data papers from European Russia in 2020 and 2021. The funded papers are available in the Biota of Russia special collection and the datasets are shown on the project page.

Definition of terms

Datasets with more than 7,000 presence records new to GBIF.org

Datasets should contain at a minimum 7,000 presence records new to GBIF.org. While the focus is on additional records for the region, records already published in GBIF may meet the criteria of ‘new’ if they are substantially improved, particularly through the addition of georeferenced locations.” Artificial reduction of records from otherwise uniform datasets to the necessary minimum (“salami publishing”) is discouraged and may result in rejection of the manuscript. New submissions describing updates of datasets, already presented in earlier published data papers will not be sponsored.

Justification for publishing datasets with fewer records (e.g. sampling-event datasets, sequence-based data, checklists with endemics etc.) will be considered on a case-by-case basis.

Datasets with high-quality data and metadata

Authors should start by publishing a dataset comprised of data and metadata that meets GBIF’s stated data quality requirement. This effort will involve work on an installation of the GBIF Integrated Publishing Toolkit. BDJ will conduct its standard data audit and technical review. All datasets must pass the data audit prior to a manuscript being forwarded for peer review.

Only when the dataset is prepared should authors then turn to working on the manuscript text. The extended metadata you enter in the IPT while describing your dataset can be converted into manuscript with a single-click of a button in the ARPHA Writing Tool (see also Creation and Publication of Data Papers from Ecological Metadata Language (EML) Metadata. Authors can then complete, edit and submit manuscripts to BDJ for review.

Datasets with geographic coverage in Northern Eurasia

In correspondence with the funding priorities of this programme, at least 80% of the records in a dataset should have coordinates that fall within the priority areas of Russia, Ukraine, Belarus, Kazakhstan, Kyrgyzstan, Uzbekistan, Tajikistan, Turkmenistan, Moldova, Georgia, Armenia and Azerbaijan. However, authors of the paper may be affiliated with institutions anywhere in the world.

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Unwelcome guests: International tourism and travel can be a pathway for introducing invasive species

International tourism can facilitate the dispersal of exotic species. A new analysis of data from tourism accommodations and exotic organism detections in New Zealand, published in NeoBiota, shows that levels of detection significantly correlated to international and domestic tourist movement, even with population levels taken into account. There was no detectable difference between the risk from international and domestic tourists, indicating that tourism as an activity correlates with the introduction and spread of exotic species.

Tourists, albeit unwittingly, may help such unwanted organisms spread further and conquer new lands – they can carry them over in their luggage or on their clothes and shoes. In 2011, a study from New Zealand found that, for every gram of soil on the footwear of aircraft passengers arriving from abroad, there were 2.5 plant seeds, 41 roundworms, 0.004 insects and mites, and many microorganisms, such as fungi that could cause plant diseases. Moreover, these organisms were alive, and some of them were known to be biosecurity threats. Importantly, tourism can introduce risk in two directions, namely from the arrival of international travellers and also the return of residents from international travel.

An important question, then, is to what degree they play a role in the spread of exotic organisms. A study, carried out by Dr Andrew Robinson of the Centre of Excellence for Biosecurity Risk Analysis at the University of Melbourne and Mark McNeill of AgResearch New Zealand, looks to answer that question.

To do so, the researchers compared data on the interceptions of exotic organisms in New Zealand against accommodation data for international and domestic tourists, factoring for the country’s population distribution. The study, recently published in the open-access journal NeoBiota, covered the period between 2011 and 2017, and the exotic organisms that were detected included insects, spiders, mites, snails, plants, and roundworms. 

Robinson and McNeill found a significant relationship between levels of incursion detection and tourism accommodation records: the number of nights spent in hotels significantly correlated to the detection of exotic pests for that period. Importantly, the study found no significant difference between the effect of international and domestic tourism, proving that even travel within the country can facilitate the spread of exotic species. A significant positive correlation was also found between the detection of exotic organisms and population numbers across different regions. 

“The core take-home message is that within-country tourism movements are significantly correlated to the detection of exotic pests,” the researchers explained. That is, tourists and returning residents bring bugs in, and both are implicated at spreading them once they are in the country. They suggest that biosecurity authorities should continue allocating resources to the management of invasive species and pests that get carried around by tourists and their activities. 

However, they also point to the biosecurity risk posed by other possible pathways for of exotic organisms, such as sea freight. A comparison between the different ways of introduction and dispersal would provide a better understanding of relative risk, they conclude.

Research article:

Robinson AP, McNeill MR (2022) Biosecurity and post-arrival pathways in New Zealand: relating alien organism detections to tourism indicators. NeoBiota 71: 51-69. https://doi.org/10.3897/neobiota.71.64618

Green backyards help increase urban climate resilience: Here is how

New study evaluates the effects of greenery on thermal comfort, biodiversity, carbon storage and social interactions.

Green spaces in cities have a number of positive effects: they’re good for our physical and mental health, they’re good for the environment, and they can even help fight off the effects of climate change.

To explore the impact of additional green structures in cities, Katja Schmidt and Ariane Walz, affiliated with the University of Potsdam, Germany, quantified their effects on different aspects such as thermal comfort, biodiversity, carbon storage and social interaction. Their study, published in the open-access, peer-reviewed journal One Ecosystem, combines knowledge from health research, ecology and socio-ecological research, and shows how the better we know a particular type of ecosystem, the better we can adapt to climate change.

Green residential courtyards in Potsdam. Photo by Jan Michalko, University of Potsdam

Pursuing a multi-method approach that ranged from local climate measurements to habitat and tree mapping, the authors compared four green residential courtyards in Potsdam. The spaces were similarly built, but had different ratios and sizes of features (lawns, flowerbeds, paths, playgrounds and allotments), as well as different tree and shrub population. 

While doing their research, Schmidt and Walz saw how even small differences in the green structure affect the provision of benefits, but one thing was clear: the greener courtyards yielded more benefits. Trees have the vital ability to cool down the environment and increase thermal comfort. Remarkably, the researchers report additional cooling effects of up to 11°C in the greener court yards. This means that residential green structures can prove of great value for human health during summertime heat, when asphalt and buildings make hot days even hotter. Considering the ageing demographic and the likely increase of heatwaves in the area, this is likely to have even greater health implications in the coming years. 

Microclimatic measurements in residential courtyards. Photo by Tobias Hopfgarten, University of Potsdam

Urban green spaces can also be an important factor in carbon storage, as urban soils and trees have the capacity to act as a sink for atmospheric carbon dioxide. The residential yards with more and larger trees, logically, have the power to store more carbon. This is where proper maintenance comes in: when yards are managed sustainably, trees live longer and can store more carbon.

“Considering the trend of increasing quantity and magnitude of extreme weather events and the vulnerability of urban areas, green spaces are known to provide great potential to increase urban climate resilience. Our work highlights the widespread positive effects of additional green structures in residential open spaces, a type of urban green space that is frequently understudied,” points out Dr. Schmidt.

As a conclusion, the researchers point out that if land owners and leaseholders receive incentives to commit to climate adaptation, and neighbourhoods come up with deliberate management strategies, these benefits could be further enhanced, contributing to a more sustainable urban development.

Research article:

Schmidt K, Walz A (2021) Ecosystem-based adaptation to climate change through residential urban green structures: co-benefits to thermal comfort, biodiversity, carbon storage and social interaction. One Ecosystem 6: e65706. https://doi.org/10.3897/oneeco.6.e65706