Nature Conservation

Eye for Detail: Papers in Pensoft journals sport a new look

As behaviours and needs of readers change, we strive to keep up with the times. Let’s run through what & why has changed to the PDF format.

Readers at some of the journals published by Pensoft, who have downloaded/printed a publication or ordered a physical copy of a journal issue over the last few weeks, might be in for a surprise concerning the layout of the PDF format of the articles.

Research papers published in ZooKeys demonstrating the former (left) and the current (right) article layout seen in the PDF format.

Even though it’s been years since online publishing has become the norm in how we are consuming information – including scientific publications – we understand that academia is still very much fond of traditional, often paper-based, article layout format: the one you use when accessing a PDF file or a print copy, rather than directly scrolling down through the HTML version of the article.

Even if today large orders of printed volumes from overseas are the exception, rather than the rule, we know we have readers of ours who regularly print manuscripts at home or savе them on their devices. Trends like this have already led to many journals first abandoning the physical- for digital-first, then transitioning to digital-only publication format.

Meanwhile, it is true that needs and demands have fundamentally changed in recent times.

As we speak, readers are accessing PDF files from much higher-quality desktops, in order to skim through as much content as possible.

In the meantime, authors are relying on greater-quality cameras to document their discoveries, while using advanced computational tools capable of generating and analysing extra layers of precise data. While producing more exhaustive research, however, it is also of key importance that their manuscripts are processed and published as rapidly as possible.

So, let’s run through the updates and give you our reasoning for their added value to readers and authors.

Revised opening page

One of the major changes is the one to the format of the first page. By leaving some blank space on the left, we found a dedicated place for important article metadata, i.e. academic editor, date of manuscript submission / acceptance / publication, citation details and licence. As a result, we “cleaned up” the upper part of the page, so that it can better highlight the authors and their affiliations.

Bottom line: The new layout provides a better structure to the opening page to let readers find key article metadata at a glance.

Expand as much – or as little – as comfortable

As you might know, journals published by Pensoft have been coming in different formats and sizes. Now, we have introduced the standard A4 page size, where the text is laid in a single column that has been slightly indented to the right, as seen above. Whenever a figure or a table is used in a manuscript, however, it is expanded onto the whole width of the page.

Before giving our reasons why, let’s see what were the specific problems that we address.

Case study 1

Some of our signature journals, including ZooKeys, PhytoKeys and MycoKeys, have become quite recognisable with their smaller-than-average B5 format, widely appreciated by people who would often be seen carrying around a copy during a conference or an international flight.

However, in recent times, authors began to embrace good practices in research like open sharing of data and code, which resulted in larger and more complex tables. Similarly, their pocket-sized cameras would capture much higher-resolution photos capable of revealing otherwise minute morphological characters. Smaller page size would also mean that often there would be pages between an in-text reference of a figure or a table and the visual itself.

So, here we faced an obvious question: shall we deprive their readers from all those detailed insights into the published studies?

Case study 2

Meanwhile, other journals, such as Herpetozoa, Zoosystematics and Evolution and Deutsche Entomologische Zeitschrift, had long been operating in A4 size, thereby providing their readers with a full view of the figures in their publications.

Yet, the A4 format brought up another issue: the lines were too long for the eye comfort of their readers.

What they did was organise their pages into two-column format. While this sounds like a good and quite obvious decision, the format – best known from print newspapers – is pretty inconvenient when accessed digitally. Since the readers would like to zoom in on the PDF page or simply access the article on mobile, they will need to scroll up and down several times per page.

In addition, the production of a two-column text is technologically more challenging, which results in extra production time.

Bottom line: The new layout allows journals to not sacrifice image quality for text readability and vice versa. As a bonus, authors enjoy faster publication for their papers.

Simplified font

If you have a closer look at the PDF file, you would notice that print-ready papers have also switched to a more simplistic – yet easier to the eye – font. Again, the update corresponds to today’s digital-native user behaviour, where readers often access PDF files from devices of various resolutions and skim through the text, as opposed to studying its content in detail.

In fact, the change is hardly new, since the same font has long been utilised for the webpages (HTML format) of the publications across all journals.

Bottom line: The slightly rounder and simplified font prompts readability, thereby allowing for faster and increased consumption of content.

What’s the catch? How about characters and APCs?

While we have been receiving a lot of positive feedback from editors, authors and readers, there has been a concern that the updates would increase the publication charges, wherever these are estimated based on page numbers.

Having calculated the lines and characters in the new layout format, we would like to assure you that there is no increase in the numbers of characters or words between the former and current layout formats. In fact, due to the additional number of lines fitting in an A4 page as opposed to B5, authors might be even up for a deal.

________

* At the time of the writing, the new paper layout has not been rolled out at all journals published by Pensoft. However, most of the editorial boards have already confirmed they would like to incorporate the update.

________

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Can deep learning help us save mangrove forests?

Object-oriented classification of fused Sentinel images can significantly improve the accuracy of mangrove land use/land cover classification.

Mangrove forests are an essential component of the coastal zones in tropical and subtropical areas, providing a wide range of goods and ecosystem services that play a vital role in ecology. They are also threatened, disappearing, and degraded across the globe.

One way to stimulate effective mangrove conservation and encourage policies for their protection is to carefully assess mangrove habitats and how they change, and identify fragmented areas. But obtaining this kind of information is not always an easy task.

“Since mangrove forests are located in tidal zones and marshy areas, they are hardly accessible,” says Dr. Neda Bihamta Toosi, postdoc at Isfahan University of Technology in Iran working on landscape pattern changes using remote sensing. In a recent study in the journal Nature Conservation, together with a team of authors, she explored ways to classify these fragile ecosystems using machine learning.

Comparing the performance of different combinations of satellite images and classification techniques, the researchers looked at how good each method was at mapping mangrove ecosystems.

“We developed a novel method with a focus on landscape ecology for mapping the spatial disturbance of mangrove ecosystems,” she explains. “The provided disturbance maps facilitate future management and planning activities for mangrove ecosystems in an efficient way, thus supporting the sustainable conservation of these coastal areas.”

The results of the study showed that object-oriented classification of fused Sentinel images can significantly improve the accuracy of mangrove land use/land cover classification.

“Assessing and monitoring the condition of such ecosystems using model-based landscape metrics and principal component analysis techniques is a time- and cost-effective approach. The use of multispectral remote sensing data to generate a detailed land cover map was essential, and freely available Sentinel-2 data will guarantee its continuity in future,” explains Dr. Bihamta Toosi.

The research team hopes this approach can be used to provide information on the trend of changes in land cover that affect the development and management of mangrove ecosystems, supporting better planning and decision-making.

“Our results on the mapping of mangrove ecosystems can contribute to the improvement of management and conservation strategies for these ecosystems impacted by human activities,“ they write in their study.

Research article:

Soffianian AR, Toosi NB, Asgarian A, Regnauld H, Fakheran S, Waser LT (2023) Evaluating resampled and fused Sentinel-2 data and machine-learning algorithms for mangrove mapping in the northern coast of Qeshm island, Iran. Nature Conservation 52: 1-22. https://doi.org/10.3897/natureconservation.52.89639

Illegal trade and poor regulation threaten pangolins in China

Unpermitted sellers are commonly found illegally selling pangolin scale products for the purposes of traditional Chinese medicine.

Pangolins, unique scale-covered mammals, are drastically declining in numbers across Asia and Africa, largely due to illegal trade. Part of the trade, both legal and illegal, supports the traditional Chinese medicine market, which has attracted conservation attention. The level of demand for pangolins and other animals in traditional Chinese medicine, however, hasn’t been thoroughly studied.

In a new study published in the journal Nature Conservation, Dr Yifu Wang, currently a postdoc researcher at the University of Hong Kong, investigated pangolin scale trade in China, interviewing staff in hospitals and pharmaceutical shops in two provinces (Henan and Hainan). Between October 2016 and April 2017, she and her team talked to doctors from 41 hospitals and shop owners and assistants from 134 pharmaceutical shops.

An adult Philippine Pangolin and her pup photographed in the forests of Palawan. Photo by Gregg Yan under a CC-BY-SA-4.0 license

The research found pangolin scales and their derivatives were widely available in hospitals and pharmaceutical shops across Henan and Hainan Provinces. The legislation in place, however, has not been able to prevent ongoing illegal trade in pangolin products. Her team found that 46% of surveyed hospitals and 34% of surveyed pharmaceutical shops were selling pangolin scale products illegally.

“Existing legal trade allows 711 hospitals to sell pangolin products as medicine with regulations on manufacturer, package, and national annual sale quantity,” explains Dr Yifu Wang. “However, we show that pangolin scales are under heavy demand and unpermitted sellers are commonly found illegally selling pangolin products.”

Processed pangolin scales. Photo by Dr. Yifu Wang

“Quantities of products traded by permitted legal sellers are estimated to greatly exceed the supply capacity of legal sources,” she continues.

This widespread illegal trade, coupled with the very limited legal supply capacity compared to market demand, is concerning. The researchers point to the urgent need to reduce demand from traditional Chinese medicine on pangolin scales and revise the current legal pangolin scale trade system.

“We also highlight the importance of incorporating the traditional Chinese medicine sector into combating illegal wildlife trade and species conservation beyond pangolins,” they conclude.

The researchers plan to continue investigating the pangolin scale market in China to understand the trade after COVID-19.

Research article:

Wang Y, Turvey ST, Leader-Williams N (2023) The scale of the problem: understanding the demand for medicinal pangolin products in China. Nature Conservation 52: 47-61. https://doi.org/10.3897/natureconservation.52.95916

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Protecting marine biodiversity: we take a look at science

In light of the UN’s High Seas Treaty, we look back at deep-sea science published in our journals.

Surely, March 2023 will be remembered with the historic agreement of UN member states to protect marine biodiversity in the world’s oceans.

The so-called High Seas Treaty is a legal framework for the protection of marine biodiversity and responsible and equitable use of resources of areas beyond national jurisdiction (BBJN). Its draft, published on the 5th of March 2023, is the outcome of two decades of negotiations, and is part of the international effort to protect a third of the world’s biodiversity by 2030.

An unwavering dedication to the protection and conservation of biodiversity will be required to see the firm landing of this hopeful step.

On this occasion, we look back at some impactful studies published in our journals that have made waves, hopefully in the right direction towards impactful conservation measures and actions.

Following President Barack Obama’s expansion of the largest permanent Marine Protected Area on Earth (Papahānaumokuākea Marine National Monument) in 2016, a new species of coral-reef fish was named in his honour. The fish is the only known coral-reef species to be endemic to the Monument, and, despite its small size, it carries wide-reaching cultural and political significance as a reminder of how politics go hand in hand with science.

Former President of the United States, Barack Obama, arriving on Midway Atoll Midway on September 1, 2016 to commemorate his use of the Antiquities Act to expand the boundaries of the Papahānaumokuākea Marine National Monument. Dr. Sylvia Earle gives President Barack Obama a photograph of *Tosanoides obama* on Midway Atoll, from the film “Sea of Hope: America’s Underwater Treasures” premiered on National Geographic Channel on January 15, 2017. See also the news story on National Geographic.

Other studies from our flagship zoology journal ZooKeys have focused on the benthic megafauna and abyssal fauna of the Clarion-Clipperton Zone (CCZ) in the Pacific Ocean.

The Clarion-Clipperton Zone, managed by the International Seabed Authority, has been targeted by deep-sea mining interests. In the context of heightened concern over potential biodiversity loss, scientific research is crucial for informing policy-makers and the general public about the risks and outcomes of such initiatives.

The Clarion-Clipperton Zone, central Pacific Ocean (purple box), spanning 6 milllion km². Knowledge of marine biodiversity in the area is crucial for its protection.
Image source: A. Glover at al. (2016).

The rich biodiversity of the deep sea has also been documented in big-scale taxonomic inventories and checklists in the Biodiversity Data Journal.

Such examples are the publication of 48 new echinoderm records from the CCZ made during a single 25-day cruise, marking a ~25% increase of the echinoderm species records previously available in databases. Other notable contributions are the first image atlas of annelid, arthropod, bryozoan, chordate, ctenophore and mollusc morphospecies and the first image atlas of echinoderm megafauna morphospecies inhabiting the UK-1 exploration contract area and the eastern CCZ.

The echinoderm *Amphioplus* cf. *daleus* Lyman, 1879. Image source: A. Glover at al.

*Hymenopenaeus* cf. *nereus* observed in the UK-1 exploration contract area.
Image source: Amon et al. (2017).

Going forward, the expansion of Marine Protected Areas should also ensure the implementation of policies for the methods of resource extraction and their equitable sharing and use among the world’s nations.

Over the next few years, we hope to see an ever increasing interest in biodiversity conservation - from the general public, stakeholders and policy makers, and, of course, research institutions.

 We need to love what we protect in order to be able to protect it.

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Interoperable biodiversity data extracted from literature through open-ended queries

OpenBiodiv is a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System.

The OpenBiodiv contribution to BiCIKL

Apart from coordinating the Horizon 2020-funded project BiCIKL, scholarly publisher and technology provider Pensoft has been the engine behind what is likely to be the first production-stage semantic system to run on top of a reasonably-sized biodiversity knowledge graph.

OpenBiodiv is a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System.

As of February 2023, OpenBiodiv contains 36,308 processed articles; 69,596 taxon treatments; 1,131 institutions; 460,475 taxon names; 87,876 sequences; 247,023 bibliographic references; 341,594 author names; and 2,770,357 article sections and subsections.

In fact, OpenBiodiv is a whole ecosystem comprising tools and services that enable biodiversity data to be extracted from the text of biodiversity articles published in data-minable XML format, as in the journals published by Pensoft (e.g. ZooKeys, PhytoKeys, MycoKeys, Biodiversity Data Journal), and other taxonomic treatments – available from Plazi and Plazi’s specialised extraction workflow – into Linked Open Data.

“I believe that OpenBiodiv is a good real-life example of how the outputs and efforts of a research project may and should outlive the duration of the project itself. Something that is – of course – central to our mission at BiCIKL.”
explains Prof Lyubomir Penev, BiCIKL’s Project Coordinator and founder and CEO of Pensoft.

“The basics of what was to become the OpenBiodiv database began to come together back in 2015 within the EU-funded BIG4 PhD project of Victor Senderov, later succeeded by another PhD project by Mariya Dimitrova within IGNITE. It was during those two projects that the backend Ontology-O, the first versions of RDF converters and the basic website functionalities were created,”
he adds.

At the time OpenBiodiv became one of the nine research infrastructures within BiCIKL tasked with the provision of virtual access to open FAIR data, tools and services, it had already evolved into a RDF-based biodiversity knowledge graph, equipped with a fully automated extraction and indexing workflow and user apps.

Currently, Pensoft is working at full speed on new user apps in OpenBiodiv, as the team is continuously bringing into play invaluable feedback and recommendation from end-users and partners at BiCIKL.

As a result, OpenBiodiv is already capable of answering open-ended queries based on the available data. To do this, OpenBiodiv discovers ‘hidden’ links between data classes, i.e. taxon names, taxon treatments, specimens, sequences, persons/authors and collections/institutions.

Thus, the system generates new knowledge about taxa, scientific articles and their subsections, the examined materials and their metadata, localities and sequences, amongst others. Additionally, it is able to return information with a relevant visual representation about any one or a combination of those major data classes within a certain scope and semantic context.

Users can explore the database by either typing in any term (even if misspelt!) in the search engine available from the OpenBiodiv homepage; or integrating an Application Programming Interface (API); as well as by using SPARQL queries.

On the OpenBiodiv website, there is also a list of predefined SPARQL queries, which is continuously being expanded.

*Sample of predefined SPARQL queries at OpenBiodiv.*

“OpenBiodiv is an ambitious project of ours, and it’s surely one close to Pensoft’s heart, given our decades-long dedication to biodiversity science and knowledge sharing. Our previous fruitful partnerships with Plazi, BIG4 and IGNITE, as well as the current exciting and inspirational network of BiCIKL are wonderful examples of how far we can go with the right collaborators,”
concludes Prof Lyubomir Penev.

***

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You can also follow Pensoft on Twitter, Facebook and Linkedin and use #OpenBiodiv on Twitter.

EU responsible for extinction domino effect on frog populations

New study shows EU frogs’ legs imports put a serious risk to frogs in Southeast Asia and Eastern Europe

**In Europe, frogs’ legs are mostly offered as appetizers. © Pixabay**

Between 2010 and 2019, total imports of frog’s legs into the EU numbered 40.7 million kg, which equals to up to roughly 2 billion frogs. While Belgium is the main importer, France is the main consumer. These insights are part of a new study, published in the journal Nature Conservation, which found “inexplicable volatility” in the trade of frog legs and an extreme dependency of the EU on other countries to meet its demand.

Leading author Dr. Auliya of the Leibniz Institute for the Analysis of Biodiversity Change in Bonn, Germany, outlines the manifold uncertainties underlying this trade: “The international trade in frogs’ legs is a black box, whether it is the lack of species-specific trade data, which would be needed to ensure sustainability, or the large-scale mislabeling in trade and the challenges to identify species when it comes to processed, skinned and frozen frogs’ legs.”

Frogs’ legs from large ranids at a large-scale reptile collector in North Sumatra, Indonesia. Photo by Mark Auliya

Frogs have a central role in the ecosystem as insect predators – and where frogs disappear, the use of toxic pesticides increases. Hence, the frogs’ legs trade has direct consequences not only for the frogs themselves, but for biodiversity and ecosystem health as a whole. The extent to which pesticide residues in frogs’ legs are traded internationally remains unclear.

In the 1970s and 1980s, India and Bangladesh were the top suppliers of frogs’ legs to Europe, but when their wild frog populations collapsed, both countries banned exports. Since then, Indonesia has taken over as the largest supplier. In the Southeast Asian country, as now also in Turkey and Albania, large-legged frog species are dwindling in the wild, one after the other, causing a fatal domino effect for species conservation. This increasingly threatens frog populations in the supplier countries.

“The EU is by far the world’s largest importer of frogs’ legs, and large-legged species such as the crab-eating grass frog (Fejervarya cancrivora), the giant Javan frog (Limnonectes macrodon) and the East Asian bullfrog (Hoplobatrachus rugulosus) are in particular demand among supposed gourmets in Europe”, points out co-author Dr. Sandra Altherr, a biologist and wildlife trade expert of the Germany-based charity Pro Wildlife.

Frozen frogs’ legs on sale in a French supermarket, August 2022. Photo by Sandra Altherr / Pro Wildlife

While commercial frog farms, like those operated in Viet Nam, may at first glance seem to be an alternative that can relieve the pressure from wild frog populations, ongoing restocking of frog farms with native species from the wild and, in the case of non-native species, such as the American bullfrog (Lithobates catesbeianus) the risk of escape, invasion and potential risk of disease spread, are serious risks for the environment.

The harvest of wild frog populations and species produced at commercial frog farms for the purpose of consumption also leaves disease control and hygiene measures by the wayside; additionally, the cross-border trade of species for consumption has led to genetic pollution and hybridization between species.

Limnonectes blythii species complex from a large-scale collector in North Sumatra. Photo by Mark Auliya

„During the course of this study, it became clear just how difficult it is to obtain concrete data on the current international trade in frogs’ legs. Specifically, relevant data are scattered across different unconnected databases,“ the researchers write in their paper.

In the course of their review, they were not able to find any published data out whether pesticide residues and other potentially toxic substances in (processed) frogs or their legs imported into the EU have been monitored. “This in itself is shocking and in view of the situation in exporting countries and the lack of transparency and management in the application of agrochemicals and veterinary medicinal substances within commercial farms, we strongly recommend that this monitoring become an urgent near-future task for importing countries,” they write.

“The complexity of issues underlying the frogs’ legs trade is not a priority policy item for the EU,” the authors conclude. They add that a listing of the most-affected frog species under CITES, the Convention on International Trade in Endangered Species of Wild Fauna and Flora, would help to monitor trade and ensure its sustainability, and the EU as the main destination should take the lead on that.

Research article:

Auliya M, Altherr S, Nithart C, Hughes A, Bickford D (2023) Numerous uncertainties in the multifaceted global trade in frogs’ legs with the EU as the major consumer. Nature Conservation 51: 71-135. https://doi.org/10.3897/natureconservation.51.93868

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Fraudulent microchip use and compliance issues found on controversial lion farms in the Free State, South Africa

Operating without valid permits and inconsistent record keeping were some of the irregularities found on commercial facilities for captive lions.

A number of serious management and compliance issues were revealed on lion farms in the Free State province, South Africa, by a joint team of researchers from MONITOR, Blood Lions, and World Animal Protection. Potentially fraudulent activities relating to the use of microchips, operating without valid permits, and incomplete, inconsistent, and unclear record keeping were some of the irregularities found on commercial facilities that keep and trade captive lions and other predators.

Lions on a commercial lion farm in South Africa. Photo by Blood Lions

African lions are legally farmed in South Africa for commercial uses in interactive tourism activities, such as cub petting, voluntourism, or the “canned” hunting industry (where captive-bred lions are released into a confined space to be killed for sport). Other reasons include trade in live animals, or selling their body parts for the needs of traditional Asian Medicine.

All lions born and kept on commercial farms in South Africa should be registered with the provincial authority and fitted with a unique identification microchip, in order for each animal to be followed from birth to death through the system and to avoid the laundering of wild-caught and/or non-registered captive-bred lions.

A multinational team of researchers used permit data legally obtained from provincial authorities to summarise such uses of lions on farms in the Free State and found multiple instances of violation of national and provincial regulations.

It is known that the Free State province is at the heart of the commercial lion industry, with about a third of all lion facilities across the country located on its territory. These farms in the Free State predominantly breed, keep and euthanise lions, as well as trade with other provinces to supply “canned” hunting farms and tourism facilities. They also prepare lion body parts for export, such as taxidermy for trophies, and skeletons for the bone trade with Southeast Asia.

Lion cubs on a commercial lion farm in South Africa. Photo by Blood Lions

Data legally obtained from the Free State Department of Small Business Development, Tourism and Environmental Affairs show hundreds of reused microchip numbers across permits for keeping, euthanising and transporting captive lions, indicating potential non-compliance with national and provincial regulations.

During a four-year period (2017-2020), more than 500 unique microchips (11% of the total microchip numbers) could not be followed through the system. For euthanasia permits, the number of potentially fraudulently used microchip numbers of lions was as many as 15%, and in some cases a microchip number had been reused up to four times.

This raises serious concerns that lion farm owners may deliberately be reusing microchip numbers to launder wild-caught and/or unregistered captive-bred lions.

A lion. Photo by Matthias Appel under a CC0 1.0 license

“Although some of these inconsistencies may have legitimate explanations, the number of times microchip numbers were reused is worrisome and requires further investigation by the authorities”, states Dr Sarah Heinrich of MONITOR, one of the researchers behind the study, which was published in the journal Nature Conservation.

The laundering of lions and/or other predators through the fraudulent use of microchips has implications beyond South Africa’s borders, in particular, in the trade in lion bones for traditional medicine, where bones, claws, skeletons, and skulls are exported to Southeast Asia. “Looking at live lion exports through the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES), it is unclear what happens to these animals once they arrive at their international destinations. It is possible that some of these live exports circumvent the zero CITES lion bone export quota and are eventually euthanised at their import destinations to feed the persisting demand for lion bones”, said Dr Jennah Green of World Animal Protection.

CITES is the main regulatory mechanism governing the commercial international trade in certain wildlife species, including lions, their body parts, and derivatives. Under CITES, (African) lions are listed in Appendix II. A screenshot from Speciesplus.net, taken 31 January 2023.

Lions that were euthanised in the Free State in 2019 and 2020, during a CITES zero export quota for lion bones, most likely became part of a growing and largely unregulated stockpile of lion bones that exists in South Africa, which warrants further investigation.

Ensuring regulatory compliance in all areas of the commercial captive lion industry is more important now than ever. In 2021, Minister Barbara Creecy of the Department of Forestry, Fisheries and the Environment (DEFE), stated that the South African government intends to effectively end the commercial captive lion industry through a mandatory phase-out, which eventually was changed to a voluntary scheme.

In its current state, the lion farming industry is governed by a patchwork of contrasting legislation across multiple provincial and national authorities, with disparities and legal loopholes, which create opportunity for harmful and fraudulent activity.

“Our research highlights many areas of grave concern and these issues need the urgent attention of the Minister and the DFFE, as well as the nine provincial nature conservation authorities, to put stricter enforcement of the TOPS Regulations in place”, concludes Dr Louise de Waal, Director of Blood Lions.

Original source:

Heinrich S, Gomez L, Green J, de Waal L, Jakins C, D’Cruze N (2022) The extent and nature of the commercial captive lion industry in the Free State province, South Africa. Nature Conservation 50: 203-225. https://doi.org/10.3897/natureconservation.50.85292

Human activities degrade hippopotamus homes at Bui National Park, Ghana

Researchers found that the number of hippopotamus in the Bui National Park declined by about 70% after the construction of a hydroelectric dam in the reserve.

The Bui National Park is one of the few areas where the common hippopotamus resides in Ghana. The combined resources of the Black Volta River and the abundance of grasses make the area very suitable for hippopotamus. However, in an attempt to solve the electricity crisis the country faced in 2007, the government of Ghana constructed a hydroelectric dam in the heart of their home.

Farmers clearing trees along the rivers to begin cultivation at Bui National Park.

Knowing the consequence of dam creation on aquatic species, scientists Godfred Bempah, Martin Kobby Grant, Changhu Lu, and Amaël Borzée from Nanjing Forestry University, China, wanted to understand how the hippopotamus, a mega semi-aquatic species, was impacted by this project. The results have been published in the journal Nature Conservation. Assessing the impact of the dam construction can advise policy and decision making in future projects like this.

The researchers spent 24 days (2 days per month for 12 months) at the Bui National Park to estimate the number of hippopotamus individuals and understand local migratory activities, as well as to assess changes in land cover in the area after the dam was constructed. They then compared this information with historical data to understand the ecological changes within the area.

A hippopotamus in the Zoologico de Vallarta at Mismaloya south of Puerto Vallarta, Mexico. Photo by David Stanley under a CC BY 2.0 license

To complement the field surveys, the researchers spoke to local people familiar with the reserve before and after the dam construction. These included fishermen, canoe operators and park rangers. During the interactive discussion, all of them stated that the numbers of hippopotamus have declined compared to periods before the dam construction. They attributed the decline to poaching and habitat destruction.

The results indicated a decline in hippo numbers of about 70%: from 209 individuals in 2003 to 64 individuals in 2021.

A seized skull of Hippopotamus amphibius at the Bui national Park.

The study revealed noticeable changes in land cover after the dam construction, and, most importantly, a decline in forest cover, as well as destruction of riparian grasses, the habitat preferred by the hippopotamus. The increase in water levels flooded the areas where the animals used to reside, forcing them to disperse to other suitable areas. As they dispersed, the animals became vulnerable to poaching, which combined with habitat loss eventually led to a decline in hippopotamus numbers. It is possible that some of the animals might have successfully moved to other areas outside the reserve.

The hippopotamus is listed as Vulnerable to extinction by the IUCN Red List of Threatened Species.

In conclusion, the authors note that the number of common hippopotamus individuals in the park has declined following the dam construction, in connection with habitat destruction and poaching. Once these threats are removed, the hippopotamus can survive in the medium to long term, when effective management plans are implemented.

Research article:

Bempah G, Kobby Grant M, Lu C, Borzée A (2022) The direct and indirect effects of damming on the Hippopotamus amphibius population abundance and distribution at Bui National Park, Ghana. Nature Conservation 50: 175-201. https://doi.org/10.3897/natureconservation.50.87411

Pensoft among the first 27 publishers to share prices & services via the Journal Comparison Service by Plan S

All journals published by Pensoft – each using the publisher’s self-developed ARPHA Platform – provide extensive and transparent information about their costs and services in line with the Plan S principles.

In support of transparency and openness in scholarly publishing and academia, the scientific publisher and technology provider Pensoft joined the Journal Comparison Service (JCS) initiative by cOAlition S, an alliance of national funders and charitable bodies working to increase the volume of free-to-read research.

As a result, all journals published by Pensoft – each using the publisher’s self-developed ARPHA Platform – provide extensive and transparent information about their costs and services in line with the Plan S principles.

The JCS was launched to aid libraries and library consortia – the ones negotiating and participating in Open Access agreements with publishers – by providing them with everything they need to know in order to determine whether the prices charged by a certain journal are fair and corresponding to the quality of the service.

According to cOAlition S, an increasing number of libraries and library consortia from Europe, Africa, North America, and Australia have registered with the JCS over the past year since the launch of the portal in September 2021.

While access to the JCS is only open to librarians, individual researchers may also make use of the data provided by the participating publishers and their journals.

This is possible through an integration with the Journal Checker Tool, where researchers can simply enter the name of the journal of interest, their funder and affiliation (if applicable) to check whether the scholarly outlet complies with the Open Access policy of the author’s funder. A full list of all academic titles that provide data to the JCS is also publicly available. By being on the list means a journal and its publisher do not only support cOAlition S, but they also demonstrate that they stand for openness and transparency in scholarly publishing.

“We are delighted that Pensoft, along with a number of other publishers, have shared their price and service data through the Journal Comparison Service. Not only are such publishers demonstrating their commitment to open business models and cultures but are also helping to build understanding and trust within the research community.”
said Robert Kiley, Head of Strategy at cOAlition S.

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About cOAlition S:

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About Plan S:

Plan S is an initiative for Open Access publishing that was launched in September 2018. The plan is supported by cOAlition S, an international consortium of research funding and performing organisations. Plan S requires that, from 2021, scientific publications that result from research funded by public grants must be published in compliant Open Access journals or platforms. Read more on the cOAlition S website.

Knowledge is power: How can we make cave tourism more environmentally friendly?

A new study in Nature Conservation presents a literature-based dataset on the ecological status of 265 show caves in 39 countries across the world.

Throughout history, people have used caves for a number of reasons: as shelters, places for rituals, food storage, and, in more recent times, as touristic attractions. In these so-called show caves, visitors can experience the natural beauty of caves, usually by following a guide on constructed, artificially lit trails.

But caves are also very fragile ecosystems, bursting with underground life. They are home to numerous invertebrate and bat species, including ones that are threatened or endemic. The human disturbances caused by the changes in the infrastructure and environment, coupled with the influx of tourists, often affect the ecological processes and, consequently, these organisms. But how much do we know about the influence of tourists on cave ecosystems?

According to a new study in the open-access journal Nature Conservation, not enough.

Apart from affecting subterranean invertebrates, the artificial lighting and noise related to tourist visits may also affect the life of bats, making it harder for them to reproduce or overwinter in caves.

Going through more than 1,000 scientific papers, an Italian team of scientists, led by Marco Isaia and Elena Piano from the University of Torino, prepared a literature-based dataset relative to the knowledge on the ecological status of 265 show caves in 39 countries across the world. Their database includes a georeferenced set of show caves, where researchers have evaluated a number of environmental indicators that help monitor the impact of tourism and its related activities on subterranean ecosystems. They also list cave characteristics for each cave, including its natural heritage that attracts tourists.

There are many ways in which tourism can disturb life in a cave. For example, the presence of visitors may help increase cave temperature, which, combined with the increase of CO₂ air concentration caused by tourists’ breath, may enhance carbonate dissolution, damaging geological formations. Moreover, tourists can carry pollutants and propagules of microorganisms into the cave through their clothes and hands, which then land on geological formations, in the water, in the air, and on the ground. Apart from affecting subterranean invertebrates, the artificial lighting and noise related to tourist visits may also affect the life of bats, making it harder for them to reproduce or overwinter in caves.

The dataset published in Nature Conservation set a baseline towards the integrated and multidisciplinary study of the impacts caused by tourism on these fragile ecosystems, but the research team points out that much remains to be done. For example, they found out that there wasn’t enough research on show caves outside of Europe, or on the possible impacts of tourism on the subterranean fauna in the context of climate change.

Ultimately, the data in this study can help managing authorities come up with guidelines that will allow a sustainable touristic development of show caves, not only from an environmental perspective, but also from an economic and social point of view.

“Overall, this data paper could fill the lack of awareness towards the fragility of the natural heritage of show caves to favour a sustainable touristic use that would guarantee their preservation for future generations as well as the economic development of local communities”, the authors conclude.

Research article:

Piano E, Nicolosi G, Mammola S, Balestra V, Baroni B, Bellopede R, Cumino E, Muzzulini N, Piquet A, Isaia M (2022) A literature-based database of the natural heritage, the ecological status and tourism-related impacts in show caves worldwide. Nature Conservation 50: 159-174. https://doi.org/10.3897/natureconservation.50.80505

All images are from Bossea show cave in Italy, by Simone Marzocchi.

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