Author: Pensoft Editorial Team

First Australian night bees recorded foraging under the cover of darkness

Original post by Flinders University, Australia

Australian bees are known for pollinating plants on beautiful sunny days, but a new study has identified two species that have adapted their vision for night-time conditions for the first time.

The study by a team of ecology researchers has observed night time foraging behaviour by a nomiine (Reepenia bituberculata) and masked (Meroglossa gemmata) bee species, with both developing enlarged compound and simple eyes which allow more light to be gathered when compared to their daytime kin.

Published in the Journal of Hymenoptera Research, the researchers explain that this improved low-light ability could potentially also exist in other Australian species secretly active at night, with their image processing ability best observed through high-resolution close-up images. 

Lead author PhD Candidate James Dorey, in the College of Science & Engineering at Flinders University, says the two Australian bee species active at night and during twilight hours are mostly found in Australia’s tropical north, but there could potentially more in arid, subtropical and maybe even temperate conditions across the continent.

“We have confirmed the existence of at least two crepuscular bee species in Australia and there are likely to be many more that can forage both during the day and into the early morning or evening under low light conditions. It’s true that bees aren’t generally known to be very capable when it comes to using their eyes at night, but it turns out that low-light foraging is more common than currently thought,”

says Mr Dorey.

“Before this study, the only way to show that a bee had adapted to low-light was by using difficult-to-obtain behavioural observations, but we have found that you should be able to figure this out by using high-quality images of a specific bee.”

Mr Dorey says bees that forage during dim-light conditions aren’t studied enough with no previously reliable published records for any Australian species.  

“Our study provides a framework to help identify low-light-adapted bees and the data that is needed to determine the behavioural traits of other species. This is important as we need to increase efforts to collect bee species outside of normal hours and publish new observations to better understand the role that they play in maintaining ecosystems.”

The researchers outline why more needs to be understood about the behaviour of bee species to help protect them from the potential impacts of climate change. 

“Global weather patterns are changing and temperatures in many parts of Australia are rising along with the risk of prolonged droughts and fires. So, we have to improve our understanding about insects pollinating at night or in milder parts of the day to avoid potential extinction risks or to mitigate loss of pollination services.” 

“This also means we have to highlight the species that operate in a narrow window of time and could be sensitive to climatic changes, so conservation becomes an important concern. Because quite frankly, we have ignored these species up until now.”

Publication:

Dorey JB, Fagan-Jeffries EP, Stevens MI, Schwarz MP (2020) Morphometric comparisons and novel observations of diurnal and low-light-foraging bees. Journal of Hymenoptera Research 79: 117–144. https://doi.org/10.3897/jhr.79.57308

Pensoft Annotator – a tool for text annotation with ontologies

By Mariya Dimitrova, Georgi Zhelezov, Teodor Georgiev and Lyubomir Penev

The use of written language to record new knowledge is one of the advancements of civilisation that has helped us achieve progress. However, in the era of Big Data, the amount of published writing greatly exceeds the physical ability of humans to read and understand all written information. 

More than ever, we need computers to help us process and manage written knowledge. Unlike humans, computers are “naturally fluent” in many languages, such as the formats of the Semantic Web. These standards were developed by the World Wide Web Consortium (W3C) to enable computers to understand data published on the Internet. As a result, computers can index web content and gather data and metadata about web resources.

To help manage knowledge in different domains, humans have started to develop ontologies: shared conceptualisations of real-world objects, phenomena and abstract concepts, expressed in machine-readable formats. Such ontologies can provide computers with the necessary basic knowledge, or axioms, to help them understand the definitions and relations between resources on the Web. Ontologies outline data concepts, each with its own unique identifier, definition and human-legible label.

Matching data to its underlying ontological model is called ontology population and involves data handling and parsing that gives it additional context and semantics (meaning). Over the past couple of years, Pensoft has been working on an ontology population tool, the Pensoft Annotator, which matches free text to ontological terms.

The Pensoft Annotator is a web application, which allows annotation of text input by the user, with any of the available ontologies. Currently, they are the Environment Ontology (ENVO) and the Relation Ontology (RO), but we plan to upload many more. The Annotator can be run with multiple ontologies, and will return a table of matched ontological term identifiers, their labels, as well as the ontology from which they originate (Fig. 1). The results can also be downloaded as a Tab-Separated Value (TSV) file and certain records can be removed from the table of results, if desired. In addition, the Pensoft Annotator allows to exclude certain words (“stopwords”) from the free text matching algorithm. There is a list of default stopwords, common for the English language, such as prepositions and pronouns, but anyone can add new stopwords.

Figure 1. Interface of the Pensoft Annotator application

In Figure 1, we have annotated a sentence with the Pensoft Annotator, which yields a single matched term, labeled ‘host of’, from the Relation Ontology (RO). The ontology term identifier is linked to a webpage in Ontobee, which points to additional metadata about the ontology term (Fig. 2).

Figure 2. Web page about ontology term

Such annotation requests can be run to perform text analyses for topic modelling to discover texts which contain host-pathogen interactions. Topic modelling is used to build algorithms for content recommendation (recommender systems) which can be implemented in online news platforms, streaming services, shopping websites and others.

At Pensoft, we use the Pensoft Annotator to enrich biodiversity publications with semantics. We are currently annotating taxonomic treatments with a custom-made ontology based on the Relation Ontology (RO) to discover treatments potentially describing species interactions. You can read more about using the Annotator to detect biotic interactions in this abstract.

The Pensoft Annotator can also be used programmatically through an API, allowing you to integrate the Annotator into your own script. For more information about using the Pensoft Annotator, please check out the documentation.

Data checking for biodiversity collections and other biodiversity data compilers from Pensoft

Guest blog post by Dr Robert Mesibov

Proofreading the text of scientific papers isn’t hard, although it can be tedious. Are all the words spelled correctly? Is all the punctuation correct and in the right place? Is the writing clear and concise, with correct grammar? Are all the cited references listed in the References section, and vice-versa? Are the figure and table citations correct?

Proofreading of text is usually done first by the reviewers, and then finished by the editors and copy editors employed by scientific publishers. A similar kind of proofreading is also done with the small tables of data found in scientific papers, mainly by reviewers familiar with the management and analysis of the data concerned.

But what about proofreading the big volumes of data that are common in biodiversity informatics? Tables with tens or hundreds of thousands of rows and dozens of columns? Who does the proofreading?

Sadly, the answer is usually “No one”. Proofreading large amounts of data isn’t easy and requires special skills and digital tools. The people who compile biodiversity data often lack the skills, the software or the time to properly check what they’ve compiled.

The result is that a great deal of the data made available through biodiversity projects like GBIF is — to be charitable — “messy”. Biodiversity data often needs a lot of patient cleaning by end-users before it’s ready for analysis. To assist end-users, GBIF and other aggregators attach “flags” to each record in the database where an automated check has found a problem. These checks find the most obvious problems amongst the many possible data compilation errors. End-users often have much more work to do after the flags have been dealt with.

In 2017, Pensoft employed a data specialist to proofread the online datasets that are referenced in manuscripts submitted to Pensoft’s journals as data papers. The results of the data-checking are sent to the data paper’s authors, who then edit the datasets. This process has substantially improved many datasets (including those already made available through GBIF) and made them more suitable for digital re-use. At blog publication time, more than 200 datasets have been checked in this way.

Note that a Pensoft data audit does not check the accuracy of the data, for example, whether the authority for a species name is correct, or whether the latitude/longitude for a collecting locality agrees with the verbal description of that locality. For a more or less complete list of what does get checked, see the Data checklist at the bottom of this blog post. These checks are aimed at ensuring that datasets are correctly organised, consistently formatted and easy to move from one digital application to another. The next reader of a digital dataset is likely to be a computer program, not a human. It is essential that the data are structured and formatted, so that they are easily processed by that program and by other programs in the pipeline between the data compiler and the next human user of the data.

Pensoft’s data-checking workflow was previously offered only to authors of data paper manuscripts. It is now available to data compilers generally, with three levels of service:

  • Basic: the compiler gets a detailed report on what needs fixing
  • Standard: minor problems are fixed in the dataset and reported
  • Premium: all detected problems are fixed in collaboration with the data compiler and a report is provided

Because datasets vary so much in size and content, it is not possible to set a price in advance for basic, standard and premium data-checking. To get a quote for a dataset, send an email with a small sample of the data topublishing@pensoft.net.

—

Data checklist

Minor problems:

  • dataset not UTF-8 encoded
  • blank or broken records
  • characters other than letters, numbers, punctuation and plain whitespace
  • more than one version (the simplest or most correct one) for each character
  • unnecessary whitespace
  • Windows carriage returns (retained if required)
  • encoding errors (e.g. “Dum?ril” instead of “Duméril”)
  • missing data with a variety of representations (blank, “-“, “NA”, “?” etc)

Major problems:

  • unintended shifts of data items between fields
  • incorrect or inconsistent formatting of data items (e.g. dates)
  • different representations of the same data item (pseudo-duplication)
  • for Darwin Core datasets, incorrect use of Darwin Core fields
  • data items that are invalid or inappropriate for a field
  • data items that should be split between fields
  • data items referring to unexplained entities (e.g. “habitat is type A”)
  • truncated data items
  • disagreements between fields within a record
  • missing, but expected, data items
  • incorrectly associated data items (e.g. two country codes for the same country)
  • duplicate records, or partial duplicate records where not needed

For details of the methods used, see the author’s online resources:

***

Find more for Pensoft’s data audit workflow provided for data papers submitted to Pensoft journals on Pensoft’s blog.

FAIR biodiversity data in Pensoft journals thanks to a routine data auditing workflow

A new species of Darwin wasp from Mexico named in observance of the 2020 quarantine period

“We thought that it was a good idea to remember this extraordinary year through the name of one remarkable species of Darwin wasp found in seven Mexican States (including Tamaulipas, where the UAT campus is located) and also Guatemala,” comment the researchers who discovered the previously unknown species.

Scientists at the Autonomous University of Tamaulipas (UAT) in Mexico recently discovered five new species of parasitoid wasps in Mexico, but the name of one of them sounds a bit weird: covida. Why this name?

In fact, the reason is quite simple. The thing is that the team of Andrey Khalaim (also a researcher at the Zoological Institute of Russian Academy of Sciences in Saint Petersburg, Russia) and Enrique Ruíz Cancino discovered the new to science species during the 2020 global quarantine period, imposed due to the COVID-19 pandemic. Their findings are described in a newly published research article, in the peer-reviewed, open-access scientific journal ZooKeys.

“We thought that it was a good idea to remember this extraordinary year through the name of one remarkable species of Darwin wasp found in seven Mexican States (including Tamaulipas, where the UAT campus is located) and also Guatemala,”

explain the scientists.

The new species, which goes by the official scientific name Stethantyx covida, belongs to the Darwin wasp family Ichneumonidae, one of the most species-rich insect families, which comprises more than 25,000 species worldwide. 

“Darwin wasps are abundant and well-known almost everywhere in the world because of their beauty, gracility, and because they are used in biological control of insect pests in orchards and forests. Many Darwin wasp species attack the larvae or pupae of butterflies and moths. Yet, some species are particularly interesting, as their larvae feed on spider eggs and others, even more bizarre, develop on living spiders!”

further explain the authors of the new study.

Stethantyx covida is a small wasp that measures merely 3.5 mm in length. It is predominantly dark in colour, whereas parts of its body and legs are yellow or brown. It is highly polished and shining, and the ovipositor of the female is very long and slender.Along with Stethantyx covida, the authors also described four other Mexican species of Darwin wasps from three different genera (Stethantyx, Meggoleus, Phradis), all belonging to the subfamily Tersilochinae. Some tersilochines are common on flowers in springtime. While the majority of them are parasitoids of larvae of various beetles, some Mexican species attack sawflies, inhabiting the forests.

***

Original source:

Khalaim AI, Ruíz-Cancino E (2020) Contribution to the taxonomy of Mexican Tersilochinae (Hymenoptera, Ichneumonidae), with descriptions of five new species. ZooKeys 974: 1-21. https://doi.org/10.3897/zookeys.974.54536

Guest blog post: Snakes disembowel and feed on the organs of living toads in a first for science

A Small-banded kukri snake with its head inserted through the right side of the abdomen of an Asian black-spotted toad, in order to extract and eat the organs. The upper part of the front leg is covered by foaming blood, likewise, mixed with air bubbles from the collapsed lung.
Photo by Winai Suthanthangjai

Guest blog post by Henrik Bringsøe

Our observations on the quite small-bodied Asian kukri snakes in Thailand have documented a feeding behaviour which differs from anything ever described in snakes. 

Normally, snakes would swallow their prey whole. However, this particular species: the Small-banded Kukri Snake (Oligodon fasciolatus), would instead use its enlarged posterior maxillary teeth to cut open the abdomen of large poisonous toads, then inserts its entire head into the cavity to pull out and eat the organs one by one, while the prey is still alive! 

During those macabre attacks, we managed to capture on camera three times, the toads struggled vigorously to escape and avoid being eviscerated alive, but, on all occasions, this was in vain. The fights we saw lasted for up to a few hours, depending on the organs the snake would pull out first.

The toads observed belong to the quite common species called Asian Black-spotted Toad (Duttaphrynus melanostictus), which is known to secrete a potent toxin from their prominent parotid glands, located on the neck and all over the back. Could it be that the snakes have adopted this sophisticated and gory approach to avoid being poisoned?

In a fourth, and equally important, case, an adult kukri snake attacked a somewhat smaller individual of the same toad species. However, this time, the snake swallowed the entire toad. Why did the snake swallow the juvenile toad, we still don’t know. Perhaps smaller toads are less toxic than adults? Or, could it be that kukri snakes are indeed resistant to the Asian Black-spotted toad’s poison, yet the large size of the adult toads prevented the snakes from swallowing them in the three afore-mentioned cases?

Adult Small-banded kukri snake swallowing a large Asian black-spotted toad juvenile
(Phitsanulok, Thailand, 5 June 2020).
Photo by Kanjana Nimnuam

At present, we cannot answer any of these questions, but we will continue to observe and report on these fascinating snakes in the hope that we will uncover further interesting aspects of their biology.

Perhaps you’d be pleased to know that kukri snakes are, thankfully, harmless to humans. However, I wouldn’t recommend being bitten by one of those. The thing is that they can inflict large wounds that bleed for hours, because of the anticoagulant agent these snakes inject into the victim’s bloodstream. Their teeth are designed to inflict lacerations rather than punctures, so your finger would feel as if cut apart! This secretion, produced by two glands, called Duvernoy’s glands and located behind the eyes of the snakes, are likely beneficial while the snakes spend hours extracting toad organs.

Small-banded kukri snake having managed to slit through the left side of the abdomen of the toad underneath the left front leg. Two liver lobes next to the already dead toad are visible.
(Loei, Thailand, 9 August 2016).
Photo by Winai Suthanthangjai

***

Publication:

Bringsøe H, Suthanthangjai M, Suthanthangjai W, Nimnuam K (2020) Eviscerated alive: Novel and macabre feeding strategy in Oligodon fasciolatus (Günther, 1864) eating organs of Duttaphrynus melanostictus (Schneider, 1799) in Thailand. Herpetozoa 33: 157-163. https://doi.org/10.3897/herpetozoa.33.e57096

Wildlife trade threats: The importance of genetic data in saving an endangered species

In a new study, published in the scientific journal Nature Conservation, a research team analyses the genetic diversity of the endangered Four-eyed turtle, a species that has fallen victim to the growing wildlife trade in Vietnam. Having identified several distinct lineages in field-collected and local trade samples, the scientists warn that confiscated animals must not be released back into the wild before they have their origin traced back to the locality they have been captured.

In Southeast Asia, wildlife trade is running rampant, and Vietnam plays a key role in combating wildlife trafficking.

Since the country opened its market to China in the late 1980s, a huge amount of wildlife and its products has been transported across the border every year. Species have also been exported to other Asian countries, Europe and the USA. Furthermore, in recent years, Vietnam has also supported the transit of pangolin scales and other wildlife products from across Asia and even as far as Africa all the way to China and other destinations.

Additionally, in line with the expanding wealthy middle class, consumption of wildlife and its products has risen dramatically in Vietnam. As a consequence, the country takes on all three major roles in the international wildlife trade: export, transit and consumption.

Four-eyed turtle captured in Pu Mat National Park, central Vietnam
Credit: Asian Turtle Program
License: CC-BY 4.0

Freshwater turtles and tortoises make up a large part of the international trade between Vietnam and China and the domestic trade within Vietnam. Meanwhile, due to the increasing use of social networks, wildlife trade is shifting to online-based platforms, thereby further facilitating access to threatened species. Consequently, the Vietnamese pond turtle and the Swinhoe’s softshell turtle, for example, are already on the brink of extinction. Despite the repeated recent survey efforts of conservation biologists, no viable populations of their species have been found.

One of the effective approaches to the conservation of the most endangered species is to have confiscated animals released back into the wild, following the necessary treatment and quarantine, or transferring them to conservation breeding programmes. However, in either of the cases, it is necessary to know about the origin of the animals, because the release of individuals at sites they are not naturally adapted to, or at localities inhabited by populations of incompatible genetic makeup can have negative effects both on the gene pool and ecosystem health.

In the present research article, published in the peer-reviewed open-access scientific journal Nature Conservation, turtle conservationist and molecular biologist Dr. Minh D. Le of Vietnam National University (Hanoi) and the American Museum of Natural History (New York), in collaboration with the Cologne Zoo (Germany) and the Asian Turtle Program – Indo-Myanmar Conservation (Hanoi), the Institute of Ecology and Biological Resources (Hanoi) and Hanoi Procuratorate University (Hanoi), studies the geographic distribution of genetic diversity of the endangered Four-eyed turtle (Sacalia quadriocellata). The species, whose common name relates to the four eye-resembling spots, located on the back of its head, has traditionally been neglected by scientific and conservation efforts.

Having analysed field-collected and local trade samples along with confiscated animals, the researchers concluded that there is a significant number of genetically distinct lineages distributed in Vietnam and China, and that local trade samples could provide key data for resolving the genetic patterns of the species. They remind that Four-eyed turtles are getting more and more difficult to find in the wild.

Two four-eyed turtles captured in Pu Mat National Park, central Vietnam
Credit: Asian Turtle Program
License: CC-BY 4.0

On the other hand, the study highlights that confiscated animals are of various origin and, therefore, must not be released arbitrarily where they have been seized. Instead, the researchers recommend that captive programmes establish regular genetic screenings to determine the origin of confiscated turtles, so that the risk of crossing different lineages is eliminated. Such genetic screenings are of crucial importance to solve the current issues with biodiversity conservation in the country and the region.

Like other developing countries, Vietnam does not have any specific guidelines on how to release confiscated animals back into the wild yet. This and other similar studies emphasise the role of the government in the implementation of stricter laws and regulation,”

said Dr. Minh D. Le, lead author of the study.

This research once more underscores the IUCN’s One Plan Approach, which aims to develop integrative strategies to combine in situ and ex situ measures with expert groups, for the purposes of species conservation,

added Dr. Thomas Ziegler of the Cologne Zoo.

The research was funded by the Critical Ecosystem Partnership Fund, the Partnership for Enhanced Engagement in Research (PEER), the United States Agency for International Development, the US Fish and Wildlife Service, Vietnam’s Ministry of Science and Technology and IDEAWILD.

Trapping four-eyed turtles in Pu Mat National Park, central Vietnam
Credit: Asian Turtle Program
License: CC-BY 4.0

Original source:

Le MD, McCormack TEM, Hoang HV, Duong HT, Nguyen TQ, Ziegler T, Nguyen HD, Ngo HT (2020) Threats from wildlife trade: The importance of genetic data in safeguarding the endangered Four-eyed Turtle (Sacalia quadriocellata). Nature Conservation 41: 91-111. https://doi.org/10.3897/natureconservation.41.54661

Contact: 

Dr Minh Duc Le, Vietnam National University
Email: le.duc.minh@hus.edu.vn

Over a century later, the mystery of the Alfred Wallace’s butterfly is solved

An over a century-long mystery has been surrounding the Taiwanese butterfly fauna ever since the “father of zoogeography” Alfred Russel Wallace described a new species of butterfly: Lycaena nisa, whose identity was only re-examined in a recent project looking into the butterflies of Taiwan. Based on the original specimens, in addition to newly collected ones, Dr Yu-Feng Hsu of the National Taiwan Normal University resurrected the species name and added two new synonyms to it.

Described by the “father of zoogeography” and co-author of the theories of evolution and natural selection, the species hasn’t been reexamined since 1866

An over a century-long mystery has been surrounding the Taiwanese butterfly fauna ever since the “father of zoogeography” Alfred Russel Wallace, in collaboration with Frederic Moore, authored a landmark paper in 1866: the first to study the lepidopterans of the island. 

Back then, in their study, Moore dealt with the moths portion and Wallace investigated the butterflies. Together, they reported 139 species, comprising 93 nocturnal 46 diurnal species, respectively. Of the latter, five species were described as new to science. Even though the correct placements of four out of those five butterflies in question have been verified a number of times since 1886, one of those butterflies: Lycaena nisa, would never be re-examined until very recently. 

In a modern-day research project on Taiwanese butterflies, scientists retrieved the original type specimen from the Wallace collection at The History Museum of London, UK. Having also examined historical specimens housed at the Taiwan Agricultural Research Institute, in addition to newly collected butterflies from Australia and Hong Kong, Dr Yu-Feng Hsu of the National Taiwan Normal University finally resolved the identity of the mysterious Alfred Wallace’s butterfly: it is now going by the name Famegana nisa (comb. nov.), while two other species names (Lycaena alsulus and Zizeeria alsulus eggletoni) were proven to have been coined for the same butterfly after the original description by Wallace. Thereby, the latter two are both synonymised with Famegana nisa.


Type specimen of Famegana nisa, collected by Wallace in 1866 (upper side).
Credit: Dr Yu-Feng Hsu (courtesy of NHM)
License: CC-BY 4.0

Despite having made entomologists scratch their heads for over a century, in the wild, the Wallace’s butterfly is good at standing out. As long as one knows what else lives in the open grassy habitats around, of course. Commonly known as ‘Grass Blue’, ‘Small Grass Blue’ or ‘Black-spotted Grass Blue’, the butterfly can be easily distinguished amongst the other local species by its uniformly grayish white undersides of the wings, combined with obscure submarginal bands and a single prominent black spot on the hindwing. 

However, the species demonstrates high seasonal variability, meaning that individuals reared in the dry season have a reduced black spot, darker ground colour on wing undersides and more distinct submarginal bands in comparison to specimens from the wet season. This is why Dr Yu-Feng Hsu notes that it’s perhaps unnecessary to split the species into subspecies even though there have been up to four already recognised.

Type specimen of Famegana nisa, collected by Wallace in 1866 (bottom side).
Credit: Dr Yu-Feng Hsu (courtesy of NHM)
License: CC-BY 4.0

***

Alfred Russel Wallace, a British naturalist, explorer, geographer, anthropologist, biologist and illustrator, was a contemporary of Charles Darwin, and also worked on the debates within evolutionary theory, including natural selection. He also authored the famed book Darwinism in 1889, which explained and defended natural selection. 

While Darwin and Wallace did exchange ideas, often challenging each other’s conclusions, they worked out the idea of natural selection each on their own. In his part, Wallace insisted that there was indeed a strong reason why a certain species would evolve. Unlike Darwin, Wallace argued that rather than a random natural process, evolution was occurring to maintain a species’ fitness to the specificity of its environment. Wallace was also one of the first prominent scientists to voice concerns about the environmental impact of human activity.

***

Original source: 

Hsu Y-F (2020) The identity of Alfred Wallace’s mysterious butterfly taxon Lycaena nisa solved: Famegana nisa comb. nov., a senior synonym of F. alsulus (Lepidoptera, Lycaenidae, Polyommatinae). ZooKeys 966: 153-162. https://doi.org/10.3897/zookeys.966.51921

Contact: 

Dr Yu-Feng Hsu, National Taiwan Normal University
Email: t43018@ntnu.edu.tw 

New subspecies of the rarest Palaearctic butterfly found in the Arctic Circle of Yakutia

An isolated population of the rarest Palaearctic butterfly species: the Arctic Apollo (Parnassius arcticus), turned out to be a new to science subspecies with distinct looks as well as DNA. Named Parnassius arcticus arbugaevi, the butterfly is described in a recent paper, published in the peer-reviewed, open-access scientific journal Acta Biologica Sibirica. 

“Thanks to the field studies of our colleague and friend Yuri Bakhaev, we obtained unique butterfly specimens from the Momsky Range in North-Eastern Yakutia. This mountain range, which is about 500 km long, has until now been a real ‘blank spot’ in terms of biodiversity research,”

explains the lead author of the study, Dr Roman Yakovlev, affiliated with Tomsk State University and Altai State University.

“With the kind permission of Mikhail Ivanov, Director of the Momsky National Park, entomological collections were carried out in various parts of the park. Hard-to-reach areas were visited with the help of inspector Innokenty Fedorov,”

he adds.

Then, amongst the specimens, the scientists spotted butterflies that at first they thought to be the rarest species for the entire Palaearctic: the Arctic Apollo, a species endemic to Russia and North-Eastern Yakutia, which had only been known from the Suntar-Khayata and Verkhoyansk mountains. 

Later, however, the team noticed that the curious specimens were larger on average, had more elongated wings compared to the Arctic Apollo, and were also missing the distinct dark spot on the wings. At that moment, they thought they were rather looking at a species currently unknown to science, and belonging to the Parnassius tenedius species group.

Eventually, following in-depth morphological and molecular genetic analyses, the scientists concluded that the population from the Momsky Range was in fact a new subspecies of the Arctic Apollo and can be distinguished by a number of external and DNA differences. They named the new subspecies Parnassius arcticus arbugaevi after German Arbugaev, Director of the ecological-ethnographic complex Chochur Muran, who provided comprehensive assistance to one of the co-authors of the study, Yu.I. Bakhaev, in his research in Yakutia. 

The new subspecies inhabits dry scree slopes with poor vegetation at an elevation of 1,400 m. So far, it is only known from the type locality, Momsky Range, North-Eastern Yakutia, where butterflies can be seen from early June to July. The wingspan in males range between 39 and 45 mm.

“Thus, we obtained significant new data on the distribution and taxonomy of one of the rarest butterflies in the North Palaearctic,”

say the researchers in conclusion.

Original source:

Yakovlev RV, Shapoval NA, Bakhaev YI, Kuftina GN, Khramov BA (2020) A new subspecies of Parnassius arcticus (Eisner, 1968) (Lepidoptera, Papilionidae) from the Momsky Range (Yakutia, Russia). Acta Biologica Sibirica 6: 93-105. https://doi.org/10.3897/abs.6.e55925

Notice me! Neglected for over a century, Black sea spider crab re-described

After the revision of available type specimens from all available collections in the Russian museums and the Senckenberg Museum in Frankfurt-on-Main, as well as newly collected material in the Black Sea and the North-East Atlantic, a research team of scientists, led by Dr Vassily Spiridonov from Shirshov Institute of Oceanology of Russian Academy of Sciences, re-described Macropodia czernjawskii and provided the new data on its records and updated its ecological characteristics.

Even though recognised in the Mediterranean Sea, the Macropodia czernjawskii spider crab was ignored by scientists (even by its namesake Vladimir Czernyavsky) in the regional faunal accounts of the Black Sea for more than a century. At the same time, although other species of the genus have been listed as Black sea fauna, those listings are mostly wrong and occurred either due to historical circumstances or misidentifications.Now, scientists re-describe this, most likely, only species of the genus occurring in the Black Sea in the open-access journal Zoosystematics and Evolution.

The studied spirder crab species Macropodia czernjawskii in the wild, Tuaphat (near Gelendzhik), Caucasus, Black Sea.
Photo by Sergey Anosov

The spider crab genus Macropodia was discovered in 1814 and currently includes 18 species, mostly occurring in the Atlantic and the Mediterranean. The marine fauna of the Black Sea is predominantly of Mediterranean origin and Macropodia czernjawskii was firstly discovered in the Black Sea in 1880, but afterwards, its presence there was largely ignored by the scientists.

After the revision of available type specimens from all available collections in the Russian museums and the Senckenberg Museum in Frankfurt-on-Main, as well as newly collected material in the Black Sea and the North-East Atlantic, a research team of scientists, led by Dr Vassily Spiridonov from Shirshov Institute of Oceanology of Russian Academy of Sciences, re-described Macropodia czernjawskii and provided the new data on its records and updated its ecological characteristics.

“The analysis of the molecular genetic barcode (COI) of the available material of Macropodia species indicated that M. czernjawskii is a very distinct species while M. parva should be synonimised with M. rostrata, and M. longipes is a synonym of M. tenuirostris”,

states Dr Spiridonov sharing the details of the genus analysis.

All Macropodia species have epibiosis and M. czernjawskii is no exception: almost all examined crabs in 2008-2018 collections had significant epibiosis. It normally consists of algae and cyanobacteria and, particularly, a non-indigenous species of red alga Bonnemaisonia hamifera, officially reported in 2015 at the Caucasian coast of the Black Sea, was found in the epibiosis of M. czernjawskii four years earlier.

“It improves our understanding of its invasion history. Museum and monitoring collections of species with abundant epibiosis (in particular inachid crabs) can be used as an additional tool to record and monitor introduction and establishments of sessile non-indigenous species,”

suggests Dr Spiridonov.
The spider crab species Macropodia czernjawskii in the wild, Tuaphat (near Gelendzhik), Caucasus, Black Sea.
Photo by Sergey Anosov

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Original source:

Spiridonov VA, Simakova UV, Anosov SE, Zalota AK, Timofeev VA (2020) Review of Macropodia in the Black Sea supported by molecular barcoding data; with the redescription of the type material, observations on ecology and epibiosis of Macropodia czernjawskii (Brandt, 1880) and notes on other Atlanto-Mediterranean species of Macropodia Leach, 1814 (Crustacea, Decapoda, Inachidae). Zoosystematics and Evolution 96(2): 609-635. https://doi.org/10.3897/zse.96.48342

Australia’s wish list of exotic pets

In a new study, published in the peer-reviewed open-access scholarly journal Neobiota, scientists estimated the desire of Australians to own non-native and/or illegal alien pets and the major trends in this practice. In addition, the team suggests ways to improve biosecurity awareness in the country.

Juvenile green iguanas for sale at Repticon Trading Convention 2018 in Palm Springs, Florida
Photo by Adam Toomes

Unsustainable trade of species is a major pathway for the introduction of invasive alien species at distant localities and at higher frequencies. It is also a major driver of over-exploitation of wild native populations. In a new study, published in the peer-reviewed open-access scholarly journal Neobiota, scientists estimated the desire of Australians to own non-native and/or illegal alien pets and the major trends in this practice. In addition, the team suggests ways to improve biosecurity awareness in the country.

Over the last two decades, Australia has been experiencing an increased amount of non-native incursions from species prominent in the international pet trade, such as rose-ringed parakeets, corn snakes and red-eared sliders. On many occasions, these animals are smuggled into the country only to escape or be released in the wild.

In general, the Australian regulations on international pet trade are highly stringent, in order to minimise biosecurity and conservation risks. Some highly-desirable species represent an ongoing conservation threat and biosecurity risk via the pet-release invasion pathway. However, lack of consistent surveillance of alien pets held, legally or otherwise, in Australia remains the main challenge. While there are species which are not allowed to be imported, they are legal for domestic trade within the country. Pet keepers have the capacity to legally or illegally acquire desired pets if they are not accessible through importation, and the number of such traders is unquantified.

Since keeping most of the alien pets in Australia is either illegal or not properly regulated, it is really difficult to quantify and assess the public demand for alien wildlife.

A juvenile ball python for sale at Repticon Trading Convention 2018 in Palm Springs, Florida
Photo by Adam Toomes

“We obtained records of anonymous public enquiries to the Australian Commonwealth Department of Agriculture, Water and the Environment relating to the legality of importation of various alien taxa. We aimed to investigate whether species desired in Australia were biased towards being threatened by extinction, as indicated by broader research on pet demand or towards being invasive species elsewhere, which would indicate trade-related biosecurity risks”,

shares the lead author Mr. Adam Toomes from the University of Adelaide.

According to the research team’s analysis, pets desired by Australians are significantly biased towards threatened species, invasive species and species prominent in the U.S. pet trade.

“This novel finding is of great concern for biosecurity agencies because it suggests that a filtering process is occurring where illegally smuggled animals may already be “pre-selected” to have the characteristics that are correlated with invasive species,”

warns Mr. Adam Toomes.

However, the bias towards species already traded within the U.S. suggests that there is potential to use this as a means of predicting future Australian desire, as well as the acquisition of pets driven by desire. Future research from the Invasion Science & Wildlife Ecology Group at The University of Adelaide will investigate whether Australian seizures of illegal pets can be predicted using U.S. trade data.

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Original source:

Toomes A, Stringham OC, Mitchell L, Ross JV, Cassey P (2020) Australia’s wish list of exotic pets: biosecurity and conservation implications of desired alien and illegal pet species. NeoBiota 60: 43-59. https://doi.org/10.3897/neobiota.60.51431

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