Tag: biodiversity

Ottawa confirmed as the biodiversity hotspot for a subfamily of wasps in North America

What usually comes to mind when speaking about biodiversity hotspots are tropical regions, pristine areas and magnificent forests. Meanwhile, it is quite rare that a city in a temperate zone is considered significant in terms of biodiversity, much less mentioned as a hotspot. Yet, the city of Ottawa together with its surroundings, despite having population surpassing 1 million people, is now confirmed to be the locality in North America with the most recorded species of braconid wasps in the subfamily Microgastrinae, a group of parasitic insects that attack caterpillars and play an important role in the natural biocontrol of agriculture and forestry pests.

A study published in ZooKeys reports 158 species within 21 different genera of Microgastrinae for Ottawa. “To put this into perspective,” says Dr. Jose Fernandez-Triana, affiliated with the Canadian National Collection of Insects and lead author of the paper, “if Ottawa (a relatively small area of less than 7,800 km2) would be considered as a country itself, its species total would rank 17th among all countries in the world.”

There are close to 200 species of microgastrine wasps known from Canada and around 350 – from North America. Thus, the fauna in Ottawa equals to three quarters of the total recorded for the entire country, and almost half of all species in the Nearctic region. In fact, the diversity in the Canadian capital represents by far the highest number of species ever recorded for a locality in North America, a consequence of the city being a transition from an eastern deciduous forest biome to a boreal biome, with small areas of unusual habitats like dunes, alvars, floodplains and bogs.

Based on the analysis of almost 2,000 specimens, collected between 1894 and 2010, and housed in the Canadian National Collection of Insects, the paper also reports two new species for North America and two additional species records for Canada and Ontario, as well as dozens of new additions to the regional fauna. Seasonal distribution showed several peaks of activity, in spring, summer, and early fall.

The study highlights the incredible diversity of parasitoid wasps and how much remains to be discovered, even in temperate areas and/or city environments. “It is possible that southern localities in North America are eventually found to be more diverse than Ottawa,” notes Dr. Fernandez-Triana. “But for that to happen one would need to find an area that has a variety of habitats and has also been thoroughly sampled over the years, with thousands of specimens available for study.”

“In the meantime,” jokes the scientist, “the citizens of the Canadian capital will have the bragging rights in North America, at least for microgastrine wasp diversity.”

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Original source:

Fernandez-Triana J, Boudreault C, Buffam J, Mclean R (2016) A biodiversity hotspot for Microgastrinae (Hymenoptera, Braconidae) in North America: annotated species checklist for Ottawa, Canada. ZooKeys 633: 1-93. https://doi.org/10.3897/zookeys.633.10480

Disentangling the myth of the singing bushmaster viper with the help of tree frogs

Reaching over 3.5 m in length, the bushmaster (belonging in the Lachesis genus) is the largest viper in the western hemisphere. Legend spread among both colonists and natives from the Amazon region and Central America has it that it sings. Finding these numerous unrelated reports quite puzzling, since it is well known that snakes cannot sing, scientists took to finally disentangle the myth.

When the researchers recently conducted fieldwork in Amazonian Ecuador and Peru, they revealed it was not the snake singing. The ‘song’ was indeed the call of large tree frogs that live in hollow trunks in the forest.

While local guides in both countries attributed the songs to the bushmaster, the amphibians were almost completely unknown. To their surprise, instead of finding a snake, the field teams found two species of frogs of the genus Tepuihyla. The results are published in the open access journal ZooKeys in a collaborative effort by scientists from Catholic University of Ecuador, the Peruvian Institute of Research of the Amazon, Ecuadorian Museum of Natural Sciences, and Colorado State University, USA.

One of the tree frogs is a new species, Tepuihyla shushupe. The word shushupe is used by native people to refer to the bushmaster. The calls are highly unusual for frogs because they are a loud chuckle resembling the song of a bird. It is still unknown why locals associate the calls of the two species with the bushmaster.

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Original source:

Ron SR, Venegas PJ, Ortega-Andrade HM, Gagliardi-Urrutia G, Salerno P (2016) Systematics of Ecnomiohyla tuberculosa with the description of a new species and comments on the taxonomy of Trachycephalus typhonius (Anura, Hylidae). ZooKeys 630: 115-154. https://doi.org/10.3897/zookeys.630.9298

Two new lizards with ‘heroic past’ discovered in the Chilean Andes

Two new species of lizards have been discovered in the Andean highlands of Southern Chile. Collected from areas of heroic past, both small reptiles were named after courageous tribal chiefs who have once fought against colonial Spaniards in the Arauco war. The study, conducted by a team of Chilean scientists, is published in the open access journal ZooKeys.

Jaime Troncoso-Palacios from Universidad de Chile and his team found both new species near a lake in a pre-Andean zone among deciduous vegetation. Following the examination of the collected specimens and further analysis of their mitochondrial DNA, performed by Dr. Alvaro A. Elorza from Universidad Andres Bello, Chile, the scientists concluded that they belong to species unknown to science.

One of the species, called Liolaemus janequeoae, or, Janequeo`s Lizard, is distinct for being smaller than its relatives, measuring a maximum of roughly 7 centimeters at length, as well as having no pattern on its back. Both features are quite striking for the group of lizards it belongs to. The only contrasting coloration for the species are several white scales appearing on the upper side in males. Otherwise, the species are predominantly light brown with pearly whitish down side of the body.

In the local Lonko tribe’s history, Janequeo was a prominent chief, who lost her partner during the Arauco war, after he was caught and tortured to death by the colonial Spaniards. She is said to have had a leading role in the Battle of Fort Puchunqui. Coincidentally, the new species was discovered where the war once took place, in the Araucanía Region.

The second new species, called Liolaemus leftrarui, or Leftraru`s Lizard, was collected from the same locality, hence it also received a heroic name honoured in the Arauco war. It is called after the most prominent Mapuche tribal chief. According to the stories, he was taken by the Kingdom of Chile’s Governor at the age of 11 to become his servant. There, however, he learned the military strategy of the Spanish, managed to escape and joined his people in the war. Later, not only did he kill his former master, but also won the most remarkable victories over the Spaniards.

The Leftraru`s Lizard is a large species of about 8 centimeters in length, characterised with absent precloacal pores, a common feature for its lizard group, save few. On the upper side of its body there are also unusual light blue dots. Overall, its colour is brown splashed with dark brown spots. Apart from the blue scattered scales on the back, there is also a bit of green on its head, limbs and tail. At the rear it becomes yellowish.

In conclusion, the authors note that the lizard fauna of Chile has been mistakenly assumed to be quite scarce up until recently. Yet, their latest discovery, along with several other new species, described in recent years, could be a clear sign that, “some populations under study could be described as new species in the future”.

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Original source:

Troncoso-Palacios J, Diaz HA, Puas GI, Riveros-Riffo E, Elorza AA (2016) Two new Liolaemus lizards from the Andean highlands of Southern Chile (Squamata, Iguania, Liolaemidae). ZooKeys 632: 121-146. https://doi.org/10.3897/zookeys.632.9528

Plants cheat too: A new species of fungus-parasitizing orchid

Plants usually produce their own nutrients by using sun energy, but not all of them. A new ‘cheater’ species of orchid from Japan, lives off nutrients obtained via a special kind of symbiosis with fungi. The study was published in the open access journal PhytoKeys.

The new orchid species, named Lecanorchis tabugawaensis, is by far not on its own in its strange feeding habits. The so called mycoheterotrophic plants are found among all plant species groups.

Mycoheterotrophy is a term derived from Greek to describe the bizarre symbiotic relationship between some plants and fungi, where the plant gets nutrients parasitizing upon fungi, rather than using photosynthesis.

Considered a kind of a cheating relationship, these plants are sometimes informally referred to as “mycorrhizal cheaters”.

Having long attracted the curiosity of botanists and mycologists, a common feature of most mycoheterotrophic plants is their extreme scarcity and small size. In addition, most species are hiding in the dark understory of forests, only discoverable during the flowering and fruiting period when aboveground organs appear through the leaf litter.

Despite it seems like these ‘cheating’ plants have it all easy for themselves, in reality they are highly dependent on the activities of both the fungi and the trees that sustain them. Such a strong dependency makes this fascinating plant group particularly sensitive to environmental destruction.

“Due to the sensitivity of mycoheterotrophic plants it has long been suggested that their species richness provides a useful indicator of the overall floral diversity of forest habitats. A detailed record of the distribution of these vulnerable plants therefore provides crucial data for the conservation of primary forests,” explains leading author Dr Kenji Suetsugu, Kobe University.

Just discovered, the new orchid species has been already assessed with an IUCN status – Critically Endangered. With a distribution restricted to only two locations along the Tabu and Onna Rivers, Yakushima Island, this fungus-eating cheater might need some conservation attention.

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Original Source:

Suetsugu K, Fukunaga H (2016) Lecanorchis tabugawaensis (Orchidaceae, Vanilloideae), a new mycoheterotrophic plant from Yakushima Island, Japan. PhytoKeys 73: 125-135. doi: 10.3897/phytokeys.73.10019

LifeWatchGreece launches a Special Paper Collection for Greek biodiversity research

Developed in the 1990s and early 2000s, LifeWatch is one of the large-scale European Research Infrastructures (ESFRI) created to support biodiversity science and its developments. Its ultimate goal is to model Earth’s biodiversity based on large-scale data, to build a vast network of partners, and to liaise with other high-quality and viable research infrastructures (RI).

Being one of the founding LifeWatch member states, Greece has not only implemented LifeWatchGreece, but it is all set and ready to “fulfill the vision of the Greek LifeWatch RI and establish it as the biodiversity Centre of Excellence for South-eastern Europe”, according to the authors of the latest Biodiversity Data Journal‘s Editorial: Dr Christos Arvanitidis, Dr Eva Chatzinikolaou, Dr Vasilis Gerovasileiou, Emmanouela Panteri, Dr Nicolas Bailly, all affiliated with the Hellenic Centre for Marine Research (HCMR) and part of the LifeWatchGreece Core Team, together with Nikos Minadakis, Foundation for Research and Technology Hellas (FORTH), Alex Hardisty, Cardiff University, and Dr Wouter Los, University of Amsterdam.

Making use of the technologically advanced open access Biodiversity Data Journal and its Collections feature, the LifeWatchGreece team is publishing a vast collection of peer-reviewed scientific outputs, including software descriptions, data papers, taxonomic checklists and research articles, along with the accompanying datasets and supporting material. Their intention is to demonstrate the availability and applicability of the developed e-Services and Virtual Laboratories (vLabs) to both the scientific community, as well as the broader domain of biodiversity management.

The LifeWatchGreece Special Collection is now available in Biodiversity Data Journal, with a series of articles highlighting key contributions to the large-scale European LifeWatch RI. The Software Description papers explain the LifeWatchGreece Portal, where all the e-Services and the vLabs provided by LifeWatchGreece RI are hosted; the Data Services based on semantic web technologies, which provide detailed and specialized search paths to facilitate data mining; the R vLab which can be used for a series of statistical analyses in ecology, based on an integrated and optimized online R environment; and the Micro-CT vLab, which allows the online exploration, dissemination and interactive manipulation of micro-tomography datasets.

The LifeWatchGreece Special Collection also includes a series of taxonomic checklists (preliminary, updated and/or annotated); a series of data papers presenting historical and original datasets; and a selection of research articles reporting on the outcomes, methodologies and citizen science initiatives developed by collaborating research projects, which have shared human, hardware and software resources with LifeWatchGreece RI.

LifeWatchGreece relies on a multidisciplinary approach, involving several subsidiary initiatives; collaborations with Greek, European and World scientific communities; specialised staff, responsible for continuous updates and developments; and, of course, innovative online tools and already established IT infrastructure.

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Original source:

Arvanitidis C, Chatzinikolaou E, Gerovasileiou V, Panteri E, Bailly N, Minadakis N, Hardisty A, Los W (2016) LifeWatchGreece: Construction and operation of the National Research Infrastructure (ESFRI). Biodiversity Data Journal 4: e10791. https://doi.org/10.3897/BDJ.4.e10791

Additional information:

This work has been supported by the LifeWatchGreece infrastructure (MIS 384676), funded by the Greek Government under the General Secretariat of Research and Technology (GSRT), ESFRI Projects, National Strategic Reference Framework (NSRF).

35 years of work: More than 1000 leaf-mining pygmy moths classified & catalogued

The leaf-mining pygmy moths (family Nepticulidae) and the white eyecap moths (family Opostegidae) are among the smallest moths in the world with a wingspan of just a few millimetres. Their caterpillars make characteristic patterns in leaves: leaf mines. For the first time, the evolutionary relationships of the more than 1000 species have been analysed on the basis of DNA, resulting in a new classification.

Today, a team of scientists, led by Dr Erik J. van Nieukerken and Dr. Camiel Doorenweerd, Naturalis Biodiversity Center, Leiden, The Netherlands, published three inter-linked scientific publications in the journal Systematic Entomology and the open access journal ZooKeys, together with two online databases, providing a catalogue with the names of all species involved.

The evolutionary study, forming part of the PhD thesis of Doorenweerd, used DNA methods to show that the group is ancient and was already diverse in the early Cretaceous, ca. 100 million years ago, partly based on the occurrence of leaf mines in fossil leaves. The moths are all specialised on some species of flowering plants, also called angiosperms, and could therefore diversify when the angiosperms diversified and largely replaced ecologically other groups of plants in the Cretaceous. The study lead to the discovery of three new genera occurring in South and Central America, which are described in one of the two ZooKeys papers, stressing the peculiar character and vastly undescribed diversity of the Neotropic fauna.

Changing a classification requires a change in many species names, which prompted the authors to simultaneously publish a full catalogue of all 1072 valid species names that are known worldwide and the many synonymic names from the literature from the past 150 years.

Creating such a large and comprehensive overview became possible from the moths and leaf-mine collections of the world’s natural history museums, and culminates the past 35 years of research that van Nieukerken has spent on this group. However, a small, but not trivial, note in one of the publications indicates that we can expect at least another 1000 species of pygmy leafminer moths that are yet undiscovered.

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Original sources:

Doorenweerd C, Nieukerken EJ van, Hoare RJB (2016) Phylogeny, classification and divergence times of pygmy leafmining moths (Lepidoptera: Nepticulidae): the earliest lepidopteran radiation on Angiosperms? Systematic Entomology, Early View. doi: 10.1111/syen.1221.

Nieukerken EJ van, Doorenweerd C, Nishida K, Snyers C (2016) New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera). ZooKeys 628: 1-63. doi: 10.3897/zookeys.628.9805.

Nieukerken EJ van, Doorenweerd C, Hoare RJB, Davis DR (2016) Revised classification and catalogue of global Nepticulidae and Opostegidae (Lepidoptera: Nepticuloidea). ZooKeys 628: 65-246. doi: 10.3897/zookeys.628.9799.

Nieukerken EJ van (ed) (2016) Nepticulidae and Opostegidae of the world, version 2.0. Scratchpads, biodiversity online.

Nieukerken EJ van (ed) (2016). Nepticuloidea: Nepticulidae and Opostegidae of the World (Oct 2016 version). In: Species 2000 & ITIS Catalogue of Life, 31st October 2016 (Roskov Y., Abucay L., Orrell T., Nicolson D., Flann C., Bailly N., Kirk P., Bourgoin T., DeWalt R.E., Decock W., De Wever A., eds). Digital resource at http://www.catalogueoflife.org/col. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858. http://www.catalogueoflife.org/col/details/database/id/172

Underwater mushrooms: Curious lake fungi under every turned over stone

While fungi are well known for being essential in cycling carbon and nutrients, there are only about 100,000 described species in contrast to the 1.5 to 3 millions, assumed to exist on Earth. Of these, barely 3000 fungi belong to aquatic habitats. In fact, freshwater fungi have been researched so little, it is only now that an international research team provide the first lake-wide fungal diversity estimate in the open access journal MycoKeys.

Over the spring and the early summer of 2010, a large team of scientists, led by Dr Christian Wurzbacher and Dr Norman Warthmann, affiliated with the Leibniz-Institute of Freshwater Ecology and Inland Fisheries and the Berlin Center for Genomics in Biodiversity Research, Germany (currently at University of Gothenburg, Sweden, and the Australian National University, Australia, respectively), collected a total of 216 samples from 54 locations, encompassing eight different habitats within Lake Stechlin in North-East Germany.

Having recovered samples on three occasions over the course of the study, their aim was to test how habitat specificity affects the fungal community and whether fungal groups would reflect the availability of particulate organic matter as substrate. Unlike previous studies of aquatic fungi that compared water samples among different lakes or seasons, theirs would compare the diversity among habitats within a single lake. This included the study of fungi living in the water and the sediments, as well as fungi living on the surfaces of plants and other animals.

As a result, the scientists concluded that every type of habitat, i.e. sediments, biofilms, and submerged macrophytes (large aquatic plants), has a specific fungal community that varies more than initially expected. Of these, lake biofilms, representing a group of microorganisms, whose cells stick to each other, and cling together to a surface, turned out to be the hotspots for aquatic fungi.

“Our study provides the first estimate of lake-wide fungal diversity and highlights the important contribution of habitat heterogeneity to overall diversity and community composition,” the scientists summarise. “Habitat diversity should be considered in any sampling strategy aiming to assess the fungal diversity of a water body.”

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Original source:

Wurzbacher C, Warthmann N, Bourne EC, Attermeyer K, Allgaier M, Powell JR, Detering H, Mbedi S, Grossart H-P, Monaghan MT (2016) High habitat-specificity in fungal communities in oligo-mesotrophic, temperate Lake Stechlin (North-East Germany). MycoKeys 16: 17-44. https://doi.org/10.3897/mycokeys.16.9646

Family of scaffold web spiders increased with ~20% following discovery of 43 new species

Recent study into spider specimens collected from across China, Indonesia, Philippines, Singapore, Thailand, Vietnam and Madagascar over the past 15 years, revealed the striking number of 43 scaffold web spiders that have stayed hidden from science until now. By describing the new species in a paper published in the open access journal ZooKeys, scientists from Sichuan University and the Chinese Academy of Sciences increase the number of a scaffold web spider family (Nesticidae), known from around the world, with about twenty percents.

The studied family of scaffold web spiders is a relatively small group of arachnids, which can be found at almost any locality, apart from Siberia, Central Asia, Northern and Southern Africa and places at high latitude. Prior to the study of Drs Yucheng Lin, Francesco Ballarin and Shuqiang Li, the species counted 245 in total, 12 of which are extinct and known from fossils only. A curious peculiarity in these spiders is their comb of serrated bristles, located on their rear legs, used to pull silk bands for their webs.

Although large-scale taxonomic surveys of scaffold web spiders have long remained scarce, recently the interest towards spider research in China and Southeast Asia has seen a significant rise. Thus, over the last 15 years, Chinese, American and European arachnologists have carried out several surveys, ending up with precious samples. As a result, Dr Yucheng Lin and his team followed with deeper morphological and molecular studies to discover remarkable diversity.

In their work, the researchers have also established a new genus (Speleoticus) for five previously known, but misplaced species, which spend a lot of their time taking shelter in caves.

The majority of scaffold web spiders occur in temperate areas of the Holarctic realm, where the species tend to be medium-sized, long-legged, and prefer cave-like environments. The species found in the tropical and subtropical areas are, on the other hand, usually smaller, with shorter legs, and can be quite often spotted outside, where they crawl in forest litter, on grass, and under stones.

Original source:

Lin Y, Ballarin F, Li S (2016) A survey of the spider family Nesticidae (Arachnida, Araneae) in Asia and Madagascar, with the description of forty-three new species. ZooKeys 627: 1-168. https://doi.org/10.3897/zookeys.627.8629

New species of pea-size crab parasitizing a date mussel has a name of a Roman god

Tiny crabs, the size of a pea, dwell inside the mantles of various bivalves, living off the food filtered by their hosts. A new species of these curious crustaceans has recently been reported from the Solomon Islands, where an individual was found to parasitise a large date mussel.

Because of the new pea crab’s characteristic large additional plate, covering its upper carapace, giving it the illusion of having two faces, it has been named after Janus, the Roman two-faced god. Discoverers Dr Peter Ng, National University of Singapore, and Dr Christopher Meyer, U.S. National Museum of Natural History, Smithsonian Institution, have their findings published in the open access journal ZooKeys.

Being only the second species in the genus (the first was from Malaysia), the new pea crab Serenotheres janus can be distinguished by its broader carapace and other features. It is cream-yellow in colour.

Both representatives of the genus are unique in having an additional large plate covering the upper side of the carapace. However, its purpose is still unknown. The two pea crabs are also the only known parasites of the rock-boring bivalves of the mytilid subfamily Lithophaginae.

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Original source:

Ng PKL, Meyer C (2016) A new species of pea crab of the genus Serenotheres Ahyong & Ng, 2005 (Crustacea, Brachyura, Pinnotheridae) from the date mussel Leiosolenus Carpenter, 1857 (Mollusca, Bivalvia, Mytilidae, Lithophaginae) from the Solomon Islands. ZooKeys 623: 31-41. doi: 10.3897/zookeys.623.10272

New species of extremely leggy millipede discovered in a cave in California

Along with many spiders, pseudoscorpions, and flies discovered and catalogued by the cave explorers, a tiny threadlike millipede was found in the unexplored dark marble caves in Sequoia National Park.

The enigmatic millipede was sent to diplopodologists (scientists who specialize in the study of millipedes) Bill Shear and Paul Marek, who immediately recognized its significance as evolutionary cousin of the leggiest animal on the planet, Illacme plenipes. The new species may possess “only” 414 legs, compared to its relative’s 750, yet, it has a similar complement of bizarre anatomical features, including a body armed with 200 poison glands, silk-secreting hairs, and 4 penises. The study was published in the open access journal ZooKeys.

This new millipede, named Illacme tobini after cave biologist Ben Tobin of the National Park Service, is described by its discoverer Jean Krejca, at Zara Environmental LLC, and millipede taxonomists Paul Marek at Virginia Tech and Bill Shear, Hampden-Sydney College.

“I never would have expected that a second species of the leggiest animal on the planet would be discovered in a cave 150 miles away,” says Paul Marek, Assistant Professor in the Entomology Department at Virginia Tech. It’s closest relative lives under giant sandstone boulders outside of San Juan Bautista, California.

In addition to the new millipede’s legginess, it also has bizarre-looking mouthparts of a mysterious function, four legs that are modified into penises, a body covered in long silk-secreting hairs, and paired nozzles on each of its over 100 segments that squirt a defense chemical of an unknown nature.

In conclusion, the authors note that by exploring our world and documenting the biodiversity of this planet we can prevent anonymous extinction, a process in which a species goes extinct before we know of its role in the ecosystem, potential benefit to humanity, or its beauty.

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Original source:

Marek PE, Krejca JK, Shear WA (2016) A new species of Illacme Cook & Loomis, 1928 from Sequoia National Park, California, with a world catalog of the Siphonorhinidae (Diplopoda, Siphonophorida). ZooKeys 626: 1-43. doi: 10.3897/zookeys.626.9681