Category: Partnering scientific projects

Unpacking the possibilities of Intellectual Properties for Open Science: Pensoft joins the IP4OS project

As part of the Horizon Europe consortium IP4OS, Pensoft will contribute with services and know-how in scholarly publishing and project branding.

As part of the Horizon Europe consortium, Pensoft will contribute with services and know-how in scholarly publishing and project branding.

Pensoft takes on an integral part in the newly launched EU-funded project: Intellectual Properties for Open Science: Pensoft (IP4OS) as a leader of the Work Package 5: Knowledge transfer: Communication, Dissemination and Exploitation of project results and Sustainability

IP4OS focuses on the integration of Intellectual Property and Open Science to empower professionals across Europe in making research outputs more accessible and impactful.

The IP4OS project officially started with a kick-off symposium on 8-9 January 2025, in Kiel, Germany.

Over 50 participants from diverse fields came together for the first day of the event, which featured talks and discussions focused on the intersection between Intellectual Property and Open Science. The second day saw presentations of the work packages that mapped out the project’s activities over the next two years through a collaborative exchange of ideas.

Members of the IP4OS consortium at the project kick-off in early January 2025 (Kiel, Germany).

The Project

IP4OS aims to promote a practical connection between Intellectual Property management and Open Science principles. 

The project has outlined several objectives to reach this goal, including:

  1. Best-practice manual: IP4OS is to release a guide with actionable steps for integrating Intellectual Property and Open Science principles effectively.
  2. Raise awareness: the consortium is to inform about the use of Intellectual Property tools in the context of Open Science practices among key professional groups.
  3. Professional training: the project is to deliver educational programs to a broad audience and equip participants with practical knowledge and skills.
  4. Collaborative community: IP4OS is to engage professionals across Europe to create a network of individuals and organisations focused on the improvement of knowledge-sharing practices.

These goals are aligned with the European Commission’s vision to strengthen knowledge-sharing practices for societal and economic advancement.

Pensoft’s role in IP4OS

As the leader of Work Package 5, Pensoft is responsible for amplifying the visibility and long-term impact of the IP4OS project. 

Key activities under this work package include:
  1. Distinctive brand identity: Pensoft will create a project logo, branding guidelines, promotional content, and a website to serve as a hub for project content and updates.
  2. Communication and dissemination strategy: Pensoft will prepare a detailed plan for sharing project results amongst key stakeholders and audiences. The plan will be implemented during the early stages of the project.
  3. Project outcomes visibility: Pensoft will produce key informational materials, including the best-practice manual and educational resources. These will be shared through platforms like the European Open Science Cloud (EOSC) and Knowledge Valorisation Platform to extend the project’s reach.
  4. Stakeholder engagement: Pensoft will deliver content such as videos, press releases and newsletters to communicate the project’s progress and results to a wide audience.

These efforts, among others, aim to make the project results widely accessible and reusable by all relevant groups within and beyond the research community.

International Consortium

The project brings together nine international partners from eight countries operating in various sectors, ultimately contributing with diverse expertise:

Together, the consortium is committed to addressing the challenges of integrating Intellectual Property and Open Science practices.

Over the coming months, the IP4OS project will focus on developing resources to support professionals in advancing the use of Intellectual Property and Open Science practices. 

The IP4OS project website is coming soon!

In the meantime, make sure to follow the project’s progress by following our social media channels on BlueSky and LinkedIn.

Science Communication in Support of SDGs: Pensoft at the UN’s Science Summit 2024

Boris Barov, Project Manager at Pensoft, talked about open-science publishing and science communication as a stepping stone towards the fulfilment of biodiversity targets. 

Boris Barov (far right) and network partners at the UN Science Summit 2024 (New York, USA).

Last September saw a showcase by Pensoft at the Science Summit 2024 that took place in conjunction with the 79th session of the United Nations’ General Assembly (UNGA79) in New York.

This participation came about as a result of the collaboration within a network of European organisations from the domains of biodiversity, ecology and engineering.

The organisations at the core of the network held a workshop on the combined role of science and technology in achieving the Sustainable Development Goals (SDGs). More precisely, the Kunmig-Montreal Global Biodiversity Framework (KM GBF) was selected as a testbed, whose stipulations can guide innovation across sectors and disciplines on the road to the realisation of specific SDGs.

The day-long programme featured 30 presentations that covered a variety of themes related to research priorities and technological instruments servicing the KM GBF.  Experts and stakeholders at the political, academic and professional level were involved in the proceedings, solidifying the network’s status as a hub for innovators in biodiversity conservation efforts.

Among the speakers was Boris Barov, Project Manager at Pensoft, who introduced the audience to the importance of open-science publishing and science communication as a stepping stone towards the fulfilment of biodiversity targets. 

Barov elaborated on the key tenets and approaches ensuring that publishers like Pensoft are actively contributing to the preservation of the biosphere on a global level.

Those include:

  • disseminating conservation-centric research that uncovers findings and innovations critical to the effective implementation of the KM-GBF
  • supporting open access and knowledge sharing that guarantee the free availability of research outputs to any and all parties that need it
  • fostering an interface between science and policy that allows vital expertise to reach and inform decision-makers 
  • championing inclusivity and equality that give indigenous communities a seat at the table 

Additionally, Barov singled out Pensoft’s participation in the EU-funded research projects CO-OP4CBD, BioAgora and TRANSPATH as a testament to effective science communication that empowers stakeholder collaboration and engagement at the science-policy interface. 

It is the intention of the network of organisations to collect the stakeholder input submitted during the event in a future whitepaper designed to outline its approach to facilitating biodiversity governance through research and technology.

Moreover, this is meant to be followed by an open call rallying international support for the integration of biodiversity conservation priorities into the post-SDG agenda of the UN.

Read more about the Horizon Europe-funded CO-OP4CBD & BioAgora projects and Pensoft’s involvement on our blog. You can also follow updates from CO-OP4CBD on BluesSky, X and Linkedin. BioAgora is also on X and Linkedin.

Pensoft turns up ‘the voice’ of two strategic EU projects aiming to safeguard nature

In 2023, Pensoft also joined TRANSPATH as an expert in science communication, dissemination and exploitation. Find more on our blog and follow the Horizon Europe project on X and Linkedin.

Transformative changes for biodiversity and climate protection: Pensoft partners with EU project TRANSPATH

Innovative tools for science communication: How to increase your research impact

At the 5th ESP Europe conference in Wageningen, Pensoft will lead a training session on effective science communication through open access publishing.

The Ecosystem Services Partnership (ESP) is a global network that connects ecosystem services scientists, practitioners, stakeholders, and policymakers at local, national, regional, and global scales. ESP enhances and encourages a diversity of approaches, while reducing unnecessary duplication of effort in the development of concepts and application of ecosystem services.

Starting in 2008, ESP organises annual international conferences, where experts share research progress and exchange ideas in the field of ecosystem services, strengthening cooperation among scientists and practitioners. Since 2015, global and regional conferences started taking place bi-annually, with the 5th ESP Europe conference taking place this year between 18 and 22 November in Wageningen, The Netherlands, under the theme ‘Ecosystem Services: One Planet, One Health’.

The ESP Europe conference will focus on the question of how the ecosystem services concept can address the challenges involved in delivering the global vision of One Health. It will also highlight the interdependence of health across various domains – human, animal, plant, and ecosystem health, and the health of the global environment.

In addition to the main event, the organisers are providing access to pre-conference trainings on Sunday, 17 November, one day before the official start of the conference. One of these focuses on science communication and its role in enhancing research impact. Titled “Innovative tools for science communication: How to increase your research impact”, this session will be hosted by Pensoft Publishers.

A communication and dissemination leader in a wide range of EU research projects, as well as an independent publishing company, Pensoft will introduce the participants to best practices in science communication, drawing examples from a project portfolio which covers ecosystems and biodiversity, agriculture and forestry, pollinators and more. This training activity will also highlight the integral role of open science in effective dissemination, showcasing the opportunities facilitated by Pensoft’s open-access journals, which promoting transparency, accessibility, and reusability of results. Overall, the session will provide an in-depth look into the interlinkage between effectively communicated research outputs and the benefits of openly published data.

The Pensoft team will share their experiences with projects such as  SELINA and SpongeBoost, both of which will also be presented in the scientific sessions and via a shared booth at the event.

Everyone who has already registered for the official programme can still add a training to their application using this link.

Orthoptera and origami: Pensoft at the International Congress of Entomology

Meeting our authors in person was a chance for us to gather valuable feedback and make sure we are doing our best.

The International Congress of Entomology 2024 (ICE2024), which took place on August 25-30 2024 in Kyoto, Japan, was arguably the biggest entomology event of the year. For the Pensoft team, it was an excellent chance to catch up with our authors and editors and discuss new partnerships.

At the Kyoto International Conference Center, entomologists visited lectures, symposia, and poster presentations, but they also enjoyed insect-themed haikus, origami, and artworks, and got to sample some edible insects.

Meeting our authors in person was a chance for us to gather valuable feedback and make sure we are doing our best to provide entomologists with a frictionless process that makes their published research shine.

  • Robin Kundrata, author in ZooKeys
  • Deepa Pureswaran, author and editor in NeoBiota
  • Alain Roques, author and editor in NeoBiota
  • Jessica Gillung, author in ZooKeys
  • Ranjith AP, editor in Check List and author in ZooKeys and Journal of Hymenoptera Research
  • Minoo Heidari Latibari, author in ZooKeys
  • Elisabeth Geiser, author in ZooKeys
  • Sven Bradler, author and editor in ZooKeys
  • Showtaro Kakizoe, author in ZooKeys
  • Antonio Carapelli, author and reviewer in ZooKeys

At Stand 25, congress participants browsed the company’s open-access entomological journals, including ZooKeys, Biodiversity Data Journal, and Deutsche Entomologische Zeitschrift, as well as its wide range of books on insect diversity, systematics, and ecology.

Scientific illustrator Denitsa Peneva’s beautiful works adorned Pensoft’s stand; Mostafa Ghafouri Moghaddam, subject editor at ZooKeys and Biodiversity Data Journal and author at a number of Pensoft-published journals even got to take one of her prints home after winning a raffle that Pensoft organised. He won a beautiful illustration of Bombus fragrans on Trifolium pratense.

Pensoft’s founder and CEO and one of the founding editors of the company’s flagship journal ZooKeys, Prof. Lyubomir Penev, was there representing the company and meeting with fellow entomologists.

  • Prof. Penev with Evgeny Zakharov of the Centre for Biodiversity Genomics
  • Prof. Penev with researchers Jadranka Rota, Niklas Wahlberg, Alexander Konstantinov, and Michael Schmidt
  • Prof. Penev with researcher Caroline S. Chaboo

They also got the chance to learn about the ARPHA Platform, a next-generation publishing solution that offers a streamlined and efficient workflow for authors, reviewers, and editors.

ARPHA Platform’s 15 top features enjoyed by client journals and publishers

At ICE2024, Pensoft also presented its newest open-access jorunal, Natural History Collections and Museomics. A peer-reviewed journal for research, discussion and innovation of natural history collections, NHCM will publish under a diamond open access model, allowing free access to published content without any fees for authors or readers.

New Diamond OA journal Natural History Collections and Museomics launches on ARPHA Platform

In addition to its publishing endeavors, Pensoft also presented some of the EU-funded pollinator projects that it takes part in such as Safeguard, PollinERA, and WildPosh.

ICE2024 was a chance to advance entomological science and foster collaboration within the global scientific community. For those who missed the chance to connect with Pensoft in Kyoto, the company’s journals and platforms remain accessible online, offering opportunities to read and produce groundbreaking research in insect diversity and ecology.

MAkiNg Technology work for moNitoring polliNAtors: Pensoft joins ANTENNA

Pensoft is to maximise the project’s impact by informing stakeholders about results and raising public awareness about pollinators.

Pensoft joins the newly funded Biodiversa+ project ANTENNA focused on making technology work for monitoring pollinators and is tasked with the communication, dissemination and exploitation activities. 

The overarching goal of ANTENNA is to fill key monitoring gaps through advancing innovative technologies that will underpin and complement EU-wide pollinator monitoring schemes, and to provide tested transnational pipelines from monitoring activities to curated datasets and enhanced indicators that support pollinator-relevant policy and end-users.

The ANTENNA project answers the BiodivMon call, which was launched in September 2022 by Biodiversa+ in collaboration with the European Commission. The BiodivMon call sought proposals for three-year research projects to improve transnational monitoring of biodiversity and ecosystem change, emphasising innovation and harmonisation of biodiversity data collection and management methodologies, addressing knowledge gaps on biodiversity status and trends to combat biodiversity loss, and the effective use of existing biodiversity monitoring data. 

Supporting the work of Work Package #5: “Project coordination, and communication”, Pensoft is dedicated to maximising the project’s impact by employing a mix of channels to inform stakeholders about the results from ANTENNA and raise public awareness about pollinators.

Pensoft is also tasked with creating and maintaining a clear and recognisable project brand, promotional materials, website, social network profiles, internal communication platform, and online libraries. Another key responsibility is the development, implementation and regular updates of the project’s communication, dissemination and exploitation plans, that ANTENNA is set to follow for the next four years.

On 14-15 March 2024, ANTENNA held its official kick off meeting. Project partners came together in Halle, Germany for two days to outline objectives, discuss strategies, and set the groundwork for this venture.

Specifically, the combined expertise of the consortium will address the following objectives:

  1. Advance automated sample sorting and image recognition tools from individual prototypes to systems that can be adopted by practitioners
  2. Expand pollinator monitoring to under-researched pollinator taxa, ecosystems, and pressures
  3. Quantify the added value of novel monitoring systems in comparison and combination with ‘traditional’ methods in terms of cost effectiveness
  4. Provide a framework for integrative monitoring by combining multiple data streams and. The framework will also support the development of near real-time forecasting models as bases for early warning systems;
  5. Upscale local demonstrations into the implementation of large-scale transnational pipelines and provide context-specific guidance to the use of policy-makers and other users who might need to select monitoring methods and indicators.

Consortium*:

  1. Helmholtz-Centre for Environmental Research (UFZ), Germany
  2. Naturalis Biodiversity Center, Netherlands
  3. Aarhus University, Denmark
  4. Consejo Superior de Investigaciones Científicas (CSIC), Spain
  5. University of the Aegean, Greece
  6. Universidad Politécnica de Madrid, Spain
  7. Trinity College Dublin, Ireland

*Pensoft Publishers is a subcontractor tasked by the UFZ with multiple communication, dissemination and exploitation activities as part of Work Package 5.

Stay up to date with the ANTENNA project’s progress on X/Twitter (@ANTENNA_project) and LinkedIn (/antenna-project).

Brand new computer language describes organismal traits to create computable species descriptions

Describing traits with Phenoscript is like programming a computer code for how an organism looks.

The beetle species Grebennikovius basilewskyi. Numbers next to arrows indicate patterns of phenotype statements explained in the section “Phenoscript: main patterns of phenotype statements”. Arrow numbers from T1 to T5 illustrate individual body parts. See more in the research study.

One of the most beautiful aspects of Nature is the endless variety of shapes, colours and behaviours exhibited by organisms. These traits help organisms survive and find mates, like how a male peacock’s colourful tail attracts females or his wings allow him to fly away from danger. Understanding traits is crucial for biologists, who study them to learn how organisms evolve and adapt to different environments.

To do this, scientists first need to describe these traits in words, like saying a peacock’s tail is “vibrant, iridescent, and ornate”. This approach works for small studies, but when looking at hundreds or even millions of different animals or plants, it’s impossible for the human brain to keep track of everything.

Computers could help, but not even the latest AI technology is able to grasp human language to the extent needed by biologists. This hampers research significantly because, although scientists can handle large volumes of DNA data, linking this information to physical traits is still very difficult.

To solve this problem, researchers from the Finnish Museum of Natural History, Giulio Montanaro and Sergei Tarasov, along with collaborators, have created a special language called Phenoscript. This language is designed to describe traits in a way that both humans and computers can understand. Describing traits with Phenoscript is like programming a computer code for how an organism looks.

Phenoscript uses something called semantic technology, which helps computers understand the meaning behind words, much like how modern search engines know the difference between the fruit “apple” and the tech company “Apple” based on the context of your search.

“This language is still being tested, but it shows a lot of promise. As more scientists start using Phenoscript, it will revolutionise biology by making vast amounts of trait data available for large-scale studies, boosting the emerging field of phenomics,”

explains Montanaro.

In their research article, newly published in the open-access, peer-reviewed Biodiversity Data Journal, the researchers make use of the new language for the first time, as they create semantic phenotypes for four species of dung beetles from the genus Grebennikovius. Then, to demonstrate the power of the semantic approach, they apply simple semantic queries to the generated phenotypic descriptions. 

Finally, the team takes a look yet further ahead into modernising the way scientists work with species information. Their next aim is to integrate semantic species descriptions with the concept of nanopublications, “which encapsulates discrete pieces of information into a comprehensive knowledge graph”. As a result, data that has become part of this graph can be queried directly, thereby ensuring that it remains Findable, Accessible, Interoperable and Reusable (FAIR) through a variety of semantic resources.

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Research paper:

Montanaro G, Balhoff JP, Girón JC, Söderholm M, Tarasov S (2024) Computable species descriptions and nanopublications: applying ontology-based technologies to dung beetles (Coleoptera, Scarabaeinae). Biodiversity Data Journal 12: e121562. https://doi.org/10.3897/BDJ.12.e121562

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The hereby study is the latest addition to the special topical collection: “Linking FAIR biodiversity data through publications: The BiCIKL approach”, launched and supported by the recently concluded Horizon 2020 project: Biodiversity Community Integrated Knowledge Library (BiCIKL). The collection aims to bring together scientific publications that demonstrate the advantages and novel approaches in accessing and (re-)using linked biodiversity data.

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What expert recommendations did the BiCIKL consortium give to policy makers and research funders to ensure that biodiversity data is FAIR, linked, open and, indeed, future-proof? Find out in the blog post summarising key lessons learnt from the Horizon 2020 project.

How to ensure biodiversity data are FAIR, linked, open and future-proof?

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Follow Biodiversity Data Journal on Facebook and X.

Understanding the complex interactions between people and nature

eLTER catalyses scientific discovery and insights through state-of-the-art research infrastructure, collaborative work, and transdisciplinary expertise.

From June 4th to 18th, the Integrated European Long-Term Ecosystem, critical zone and socio-ecological Research (eLTER) is presenting its first physical exhibition in Sofia, Bulgaria.

At Lover’s Bridge, one of the most central venues in the capital for such events, visitors could see 58 photos showcasing the work of eLTER scientists and their key role in combating the grand societal challenges.

The authors – Evgeni Dimitrov and Kaloyan Konstantinov – spent half a year preparing the so-called Grand Campaign. Together, they traveled to over 30 sites in 23 countries in the span of 88 days, resulting in nearly 3000 photos and 50 videos.

Environmental sustainability can only be achieved on the basis of the robust knowledge and empirical evidence needed to identify and mitigate human impacts on ecosystems.

The pictures are accompanied by a description of each national network, site and platform, as well as the importance of eLTER’s scientific activities for Europe and the world. The goal, apart from purely aesthetic, is to acquaint the residents and guests of Sofia with the work of one of the largest and most important European Research Infrastructures.

A building with a sign that says "Consejo superior de investigaciones científicas" against a background of starry sky.
The main Doñana LTSER facilities are located inside the Doñana Biological Reserve, a UNESCO
Biosphere Reserve in Spain.

The exhibition is part of the events accompanying the annual consortia meeting, organized by the Institute of Biodiversity and Ecosystem Research at the Bulgarian Academy of Sciences (in charge of the Bulgarian LTER network), and Pensoft Publishers (leading the communication and dissemination of eLTER). This year the event is held from 3rd to 7th of June, and is attended by nearly 100 scientists from all 26 eLTER countries.

Dr Bojana Ivošević posing with unmanned aerial vehicles.
Dr Bojana Ivošević with BioSense UAVs used for vegetation monitoring of natural ecosystems, agriculture as well as archaeology in Serbia and across Southeast Europe.

The exposition is carried out in partnership with the Sofia Municipality and will be officially opened on June 6 at 11:30 am local time.

eLTER responds to the challenge of understanding the complex interactions between people and nature over the long term. Environmental sustainability can only be achieved on the basis of the robust knowledge and empirical evidence needed to identify and mitigate human impacts on ecosystems. eLTER catalyses scientific discovery and insights through its state-of-the-art research infrastructure, collaborative working culture, and transdisciplinary expertise. This enables the development and application of evidence-based solutions for the wellbeing of current and future generations.

Studies of the biogeochemical cycles and physical properties of sea-water have been conducted since the ‘70s at the Gulf of Venice.

The mission of eLTER is to facilitate high impact research and catalyse new insights about the compounded impacts of climate change, biodiversity loss, soil degradation, pollution, and unsustainable resource use on a range of European ecosystems and socio-ecological systems, representing the “critical zone” in which we live.

How to ensure biodiversity data are FAIR, linked, open and future-proof?

Now concluded Horizon 2020-funded project BiCIKL shares lessons learned with policy-makers and research funders

Within the Biodiversity Community Integrated Knowledge Library (BiCIKL) project, 14 European institutions from ten countries, spent the last three years elaborating on services and high-tech digital tools, in order to improve the findability, accessibility, interoperability and reusability (FAIR-ness) of various types of data about the world’s biodiversity. These types of data include peer-reviewed scientific literature, occurrence records, natural history collections, DNA data and more.

By ensuring all those data are readily available and efficiently interlinked to each other, the project consortium’s intention is to provide better tools to the scientific community, so that it can more rapidly and effectively study, assess, monitor and preserve Earth’s biological diversity in line with the objectives of the likes of the EU Biodiversity Strategy for 2030 and the European Green Deal. Their targets require openly available, precise and harmonised data to underpin the design of effective measures for restoration and conservation, reminds the BiCIKL consortium.

Since 2021, the project partners at BiCIKL have been working together to elaborate existing workflows and links, as well as create brand new ones, so that their data resources, platforms and tools can seamlessly communicate with each other, thereby taking the burden off the shoulders of scientists and letting them focus on their actual mission: paving the way to healthy and sustainable ecosystems across Europe and beyond.

New BiCIKL project to build a freeway between pieces of biodiversity knowledge

Now that the three-year project is officially over, the wider scientific community is yet to reap the fruits of the consortium’s efforts. In fact, the end of the BiCIKL project marks the actual beginning of a European- and global-wide revolution in the way biodiversity scientists access, use and produce data. It is time for the research community, as well as all actors involved in the study of biodiversity and the implementation of regulations necessary to protect and preserve it, to embrace the lessons learned, adopt the good practices identified and build on the knowledge in existence.

This is why amongst the BiCIKL’s major final research outputs, there are two Policy Briefs meant to summarise and highlight important recommendations addressed to key policy makers, research institutions and funders of research. After all, it is the regulatory bodies that are best equipped to share and implement best practices and guidelines.

Most recently, the BiCIKL consortium published two particularly important policy briefs, both addressed to the likes of the European Commission’s Directorate-General for Environment; the European Environment Agency; the Joint Research Centre; as well as science and policy interface platforms, such as the EU Biodiversity Platform; and also organisations and programmes, e.g. Biodiversa+ and EuropaBON, which are engaged in biodiversity monitoring, protection and restoration. The policy briefs are also to be of particular use to national research funds in the European Union.

One of the newly published policy briefs, titled “Uniting FAIR data through interlinked, machine-actionable infrastructures”, highlights the potential benefits derived from enhanced connectivity and interoperability among various types of biodiversity data. The publication includes a list of recommendations addressed to policy-makers, as well as nine key action points. Understandably, amongst the main themes are those of wider international cooperation; inclusivity and collaboration at scale; standardisation and bringing science and policy closer to industry. Another major outcome of the BiCIKL project: the Biodiversity Knowledge Hub portal is noted as central to many of these objectives and tasks in its role of a knowledge broker that will continue to be maintained and updated with additional FAIR data-compliant services as a living legacy of the collaborative efforts at BiCIKL.

The second policy brief, titled “Liberate the power of biodiversity literature as FAIR digital objects”, shares key actions that can liberate data published in non-machine actionable formats and non-interoperable platforms, so that those data can also be efficiently accessed and used; as well as ways to publish future data according to the best FAIR and linked data practices. The recommendations highlighted in the policy brief intend to support decision-making in Europe; expedite research by making biodiversity data immediately and globally accessible; provide curated data ready to use by AI applications; and bridge gaps in the life cycle of research data through digital-born data. Several new and innovative workflows, linkages and integrative mechanisms and services developed within BiCIKL are mentioned as key advancements created to access and disseminate data available from scientific literature. 

While all policy briefs and factsheets – both primarily targeted at non-expert decision-makers who play a central role in biodiversity research and conservation efforts – are openly and freely available on the project’s website, the most important contributions were published as permanent scientific records in a BiCIKL-branded dedicated collection in the peer-reviewed open-science journal Research Ideas and Outcomes (RIO). There, the policy briefs are provided as both a ready-to-print document (available as supplementary material) and an extensive academic publication.

Currently, the collection: “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective” in the RIO journal contains 60 publications, including policy briefs, project reports, methods papers, conference abstracts, demonstrating and highlighting key milestones and project outcomes from along the BiCIKL’s journey in the last three years. The collection also features over 15 scientific publications authored by people not necessarily involved in BiCIKL, but whose research uses linked open data and tools created in BiCIKL. Their publications were published in a dedicated article collection in the Biodiversity Data Journal.

BiCIKL keeps on adding project outcomes in own collection in RIO Journal

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Visit the Biodiversity Community Integrated Knowledge Library (BiCIKL) project’s website at: https://bicikl-project.eu/.

Don’t forget to also explore the Biodiversity Knowledge Hub (BKH) for yourself at: https://biodiversityknowledgehub.eu/ and watch the BKH’s introduction video. 

Highlights from the BiCIKL project are also accessible on Twitter/X from the project’s hashtag: #BiCIKL_H2020 and handle: @BiCIKL_H2020.

BiCIKL project sums up outcomes and future prospects at a Final GA in Cambridge

Pensoft took a BiCIKL ride to Naturalis to report on a 3-year endeavour towards FAIR data

Three years ago, the BiCIKL consortium took to traverse obstacles to wider use and adoption of FAIR and linked biodiversity data.

Leiden – also known as the ‘City of Keys’ and the ‘City of Discoveries’ – was aptly chosen to host the third Empowering Biodiversity Research (EBR III) conference. The two-day conference – this time focusing on the utilisation of biodiversity data as a vehicle for biodiversity research to reach to Policy – was held in a no less fitting locality: the Naturalis Biodiversity Center. 

On 25th and 26th March 2024, the delegates got the chance to learn more about the latest discoveries, trends and innovations from scientists, as well as various stakeholders, including representatives of policy-making bodies, research institutions and infrastructures. The conference also ran a poster session and a Biodiversity Informatics market, where scientists, research teams, project consortia, and providers of biodiversity research-related services and tools could showcase their work and meet like-minded professionals.

BiCIKL stops at the Naturalis Biodiversity Center

The main outcome of the BiCIKL project: the Biodiversity Knowledge Hub, a one-stop knowledge portal to interlinked and machine-readable FAIR data.

The famous for its bicycle friendliness country also made a suitable stop for BiCIKL (an acronym for the Biodiversity Community Integrated Knowledge Library): a project funded under the European Commission’s Horizon 2020 programme that aimed at triggering a culture change in the way users access, (re)use, publish and share biodiversity data. To do this, the BiCIKL consortium set off on a 3-year journey to build on the existing biodiversity data infrastructures, workflows, standards and the linkages between them.

Many of the people who have been involved in the project over the last three years could be seen all around the beautiful venue. Above all, Naturalis is itself one of the partnering institutions at BiCIKL. Then, on Tuesday, on behalf of the BiCIKL consortium and the project’s coordinator: the scientific publisher and technology innovator: Pensoft, Iva Boyadzhieva presented the work done within the project one month ahead of its official conclusion at the end of April.

As she talked about the way the BiCIKL consortium took to traverse obstacles to wider use and adoption of FAIR and linked biodiversity data, she focused on BiCIKL’s main outcome: the Biodiversity Knowledge Hub (BKH).

Key results from the BiCIKL project three years into its existence presented by Pensoft’s Iva Boyadzhieva at the EBR III conference.

Intended to act as a knowledge broker for users who wish to navigate and access sources of open and FAIR biodiversity data, guidelines, tools and services, in practicality, the BKH is a one-stop portal for understanding the complex but increasingly interconnected landscape of biodiversity research infrastructures in Europe and beyond. It collates information, guidelines, recommendations and best practices in usage of FAIR and linked biodiversity data, as well as a continuously expanded catalogue of compliant relevant services and tools.

At the core of the BKH is the FAIR Data Place (FDP), where users can familiarise themselves with each of the participating biodiversity infrastructures and network organisations, and also learn about the specific services they provide. There, anyone can explore various biodiversity data tools and services by browsing by their main data type, e.g. specimens, sequences, taxon names, literature.

While the project might be coming to an end, she pointed out, the BKH is here to stay as a navigation system in a universe of interconnected biodiversity research infrastructures.

To do this, not only will the partners continue to maintain it, but it will also remain open to any research infrastructure that wishes to feature its own tools and services compliant with the linked and FAIR data requirements set by the BiCIKL consortium.

On the event’s website you can access the BiCIKL’s slides presentation as presented at the EBR III conference.

What else was on at the EBR III?

Indisputably, the ‘hot’ topics at the EBR III were the novel technologies for remote and non-invasive, yet efficient biomonitoring; the utilisation of data and other input sourced by citizen scientists; as well as leveraging different types and sources of biodiversity data, in order to better inform decision-makers, but also future-proof the scientific knowledge we have collected and generated to date.

Project’s coordinator Dr Quentin Groom presents the B-Cubed’s approach towards standardised access to biodiversity data for the use of policy-making at the EBR III conference.

Amongst the other Horizon Europe projects presented at the EBR III conference was B-Cubed (Biodiversity Building Blocks for policy). On Monday, the project’s coordinator Dr Quentin Groom (Meise Botanic Garden) familiarised the conference participants with the project, which aims to standardise access to biodiversity data, in order to empower policymakers to proactively address the impacts of biodiversity change.

You can find more about B-Cubed and Pensoft’s role in it in this blog post.

On the event’s website you can access the B-Cubed’s slides presentation as presented at the EBR III conference.

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Dr France Gerard (UK Centre for Ecology & Hydrology) talks about the challenges in using raw data – including those provided by drones – to derive habitat condition metrics.

MAMBO: another Horizon Europe project where Pensoft has been contributing with expertise in science communication, dissemination and exploitation, was also an active participant at the event. An acronym for Modern Approaches to the Monitoring of BiOdiversity, MAMBO had its own session on Tuesday morning, where Dr Vincent Kalkman (Naturalis Biodiversity Center), Dr France Gerard (UK Centre for Ecology & Hydrology) and Prof. Toke Høye (Aarhus University) each took to the stage to demonstrate how modern technology developed within the project is to improve biodiversity and habitat monitoring. Learn more about MAMBO and Pensoft’s involvement in this blog post.

MAMBO’s project coordinator Prof. Toke T. Høye talked about smarter technologies for biodiversity monitoring, including camera traps able to count insects at a particular site.

On the event’s website you can access the MAMBO’s slides presentations by Kalkman, Gerard and Høye, as presented at the EBR III conference.

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The EBR III conference also saw a presentation – albeit remote – from Prof. Dr. Florian Leese (Dean at the University of Duisburg-Essen, Germany, and Editor-in-Chief at the Metabarcoding and Metagenomics journal), where he talked about the promise, but also the challenges for DNA-based methods to empower biodiversity monitoring. 

Amongst the key tasks here, he pointed out, are the alignment of DNA-based methods with the Global Biodiversity Framework; central push and funding for standards and guidance; publication of data in portals that adhere to the best data practices and rules; and the mobilisation of existing resources such as the meteorological ones. 

Prof. Dr. Florian Leese talked about the promise, but also the challenges for DNA-based methods to empower biodiversity monitoring. He also referred to the 2022 Forum Paper: “Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms” by R. Henrik Nilsson et al.

He also made a reference to the Forum Paper “Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms” by R. Henrik Nilsson et al., where the international team provided a brief rationale and an overview of guidelines targeting the principles and approaches of exposing DNA-derived occurrence data in the context of broader biodiversity data. In the study, published in the Metabarcoding and Metagenomics journal in 2022, they also introduced a living version of these guidelines, which continues to encourage feedback and interaction as new techniques and best practices emerge.

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You can find the programme on the conference website and see highlights on the conference hashtag: #EBR2024.

Don’t forget to also explore the Biodiversity Knowledge Hub for yourself at: https://biodiversityknowledgehub.eu/ 

Providing solutions to restoring the natural water retention function of landscapes: Pensoft joins the SpongeBoost project

At SpongeBoost, Pensoft is to take charge of the project’s identity, while building a strong network, and providing comprehensive knowledge and well-packaged information.

In recent years, Europe’s landscapes have become the victims of extreme events – ranging from floods to droughts – that have caused considerable damage to nature as well as human society. 

With the aim to tackle such severe circumstances, the newly-started Horizon Europe-funded project SpongeBoost will be working towards protecting and promoting natural sponge landscapes. 

Within SpongeBoost, the functional capacity of sponge landscapes is to be enhanced through building upon existing solutions and their large-scale implementation, but also through innovative approaches.

Pensoft is among the partnering institutions within SpongeBoost and serves as the leader of Work Package #5: “Communication, dissemination, exploitation, showcasing best practices and networking”. WP5 will aim to contribute to the project’s mission by building the overall project identity, building a strong network, and providing comprehensive knowledge and well-packaged information to targeted stakeholders.

The project 

Funded by the European Union’s Horizon Europe research and innovation programme with a budget of EUR ~3 million, the project is coordinated by the Helmholtz Centre for Environmental Research (UFZ) and will be developed with the active participation of 10 partnering institutions from seven countries across Europe. Having been officially launched in January 2024, SpongeBoost is to wrap up in December 2027. 

The project is part of the EU mission “Adaptation to Climate Change”, whose task is to support EU regions, cities and local authorities in their efforts to build resilience against the impacts of climate change.

“The protection and revitalisation of wetlands, particularly through peatland rewetting and river floodplain restoration, plays a central role in this,“

says project manager Mathias Scholz from the UFZ. 

SpongeBoost held its official kick-off meeting in late February (2024) in Leipzig, Germany.

To officially kickstart the project, the first consortium meeting took place on 21-23 February in Leipzig, Germany. The kick-off meeting saw all 10 partnering institutions meet in person to officially lay the foundation of a promising collaboration that will flourish over the next four years.

The joint mission before the newly formed consortium is to enhance the natural sponge function of wetlands and soils in Europe, aligning with EU policies for climate adaptation, disaster risk reduction and biodiversity. To achieve that, the project plans to employ both bottom-up and top-down approaches, which will foster networking and synergy at the regional and EU level.

SpongeBoost will focus on five main objectives over the next four years:

  1. Conduct a comprehensive literature review to create a standard reference catalogue for securing and enhancing sponge functions in adaptation to climate change. This catalogue will integrate social, economic, technical, and ecological effects and serve as a widely used resource across Europe and beyond.
  1. Build a knowledge base on existing approaches for enhancing sponge functions, and highlight the reasons for success or failure. The goal is to enable regions and communities to replicate effective transformative solutions. Meanwhile, the consortium is to facilitate networking initiatives with other projects and identify suitable pilot sites for monitoring long-term success using the results of previous projects.
  1. Work on the implementation, tests, refinement, and adjustment of best practices and innovative solutions through EU-wide case studies. The goal is to enhance climate resilience to extreme events and enable upscaling from local to EU levels.
  1. Develop a roadmap with practical tools to empower stakeholders, drive transformative change, and integrate sponge solutions into regional, national and European climate adaptation processes to achieve EU Green Deal targets.
  1. Connect communities and compile online resources for climate change adaptation. The goal is to facilitate access and combine a library of tools for restoration and share research findings on soil, water, and groundwater interconnection for replication across Europe.

In addition to leading the “Communication, dissemination, exploitation, showcasing best practices and networking” work package at SpongeBoost, Pensoft is to also assist the Environmental Action Germany (DUH) in the implementation of different innovative communications methods and ideas meant to support the project’s goals.

As part of the creative communication strategy, DUH will take the lead in the development of a “SpongeBooster superhero” character. By creating such a character that will be also featured in comics, the team will translate complex concepts into clear visuals and engaging narratives, thereby shaping the project’s visual identity and letting non-experts join the discourse. The Sponge Booster is to serve as an innovative method to disseminate project knowledge and address barriers with humour while fostering dialogue and avoiding potential conflicts. 

International Consortium 

The SpongeBoost project brings together a team of 10 partners from seven European countries, spanning research, policy, and management fields. The consortium members, who individually represent various restoration projects, will join forces and expertise to promote collaboration, knowledge exchange and synergies across European regions, to ultimately instil a lasting positive impact on sponge restoration for climate change adaptation.

  1. Helmholtz Centre for Environmental Research (UFZ), Germany 
  2. Pensoft Publishers, Bulgaria
  3. Wetlands International, the Netherlands
  4. University of Tartu, Estonia
  5. Jan Evangelista Purkyně University in Ústí nad Labem, Czech Republic
  6. Iberian Center for River Restoration, Spain
  7. Portuguese Society for the Study of Birds, Portugal
  8. RWTH Aachen University, Germany
  9. Stroming BV, the Netherlands
  10. Environmental Action Germany, Germany

Stay tuned for more project information on the SpongeBoost website coming soon at: www.spongeboost.eu/. In the meantime, you can follow SpongeBoost on social media on X and Linkedin.