Psychedelic rock gecko among dozens of species in need of further conservation protection in Vietnam

Researchers recommend IUCN CPSG’s One Plan Approach to Conservation measures, which include both habitat conservation and increasing the number of threatened species in breeding stations and zoos. 

Endangered psychedelic rock gecko (Cnemaspis psychedelica)
Photo by Thomas Ziegler. Licence: CC-BY.

Further conservation measures are required to protect Vietnamese reptiles, such as the psychedelic rock gecko (Cnemaspis psychedelica), from habitat loss and overharvesting, concludes a new report, published in the open-access scientific journal Nature Conservation.

Having identified areas of high reptile diversity and large numbers of endangered species, the study provides a list of the 50 most threatened species as a guide for further research and conservation action in Vietnam. 

The study, based on the bachelor thesis of Lilli Stenger (University of Cologne, Germany), recommends IUCN CPSG’s One Plan Approach to Conservation measures, which, next to improved habitat conservation, also involves increasing the number of threatened species in breeding stations and zoos to maintain populations suitable for restocking. 

Co-authors of the report are Anke Große Hovest (University of Cologne, Germany), Truong Quang Nguyen (Vietnam Academy of Science and Technology), Cuong The Pham, (Vietnam Academy of Science and Technology), Anna Rauhaus (Cologne Zoo, Germany), Minh Duc Le (Vietnam National University), Dennis Rödder (Leibniz Institute for the Analysis of Biodiversity Change, Germany) and Thomas Ziegler (University of Cologne and Cologne Zoo, Germany).

“Modern zoos, as well as local facilities, can play a crucial role in not only conducting or financially supporting in situ conservation projects, that is to say in nature, but also by protecting species from extinction through maintaining ex situ assurance colonies to reinforce in situ conservation programs,”

said Prof. Dr. Thomas Ziegler, Vietnam conservation team member and coordinator from Cologne Zoo, Germany.
Endangered Truong Son pit viper or Quang Binh pit viper (Trimeresurus truongsonensis).
Photo by Thomas Ziegler. Licence: CC-BY.

The scientists identified 484 reptile species known to Vietnam, aiming to provide a baseline to authorities, conservationists, rescue centers, and zoos, so they can follow up with appropriate conservation measures for endangered species. They note that the number is likely to go up, as the country is regarded as a top biodiversity hotspot, and the rate of new reptile species discoveries remains high.

According to the IUCN Red List, 74 of the identified species are considered threatened with extinction, including 34 endemic species. For more than half of Vietnam’s endemic reptiles (85 of 159), the IUCN Red List status is either missing or outdated, and further research is imperative for these species, the researchers say.

Vietnam has a high level of reptile diversity and an outstanding number of endemic species. The species richness maps in the study revealed the Central Annamites in central Vietnam to harbor the highest endemic species diversity (32 species), which highlights it as a site of particular importance for reptile conservation. Alarmingly, a protected area analysis showed that 53 of the 159 endemic species (33.2%) including 17 threatened species, have been recorded exclusively from unprotected areas, such as the Psychedelic Rock Gecko.

The Critically Endangered Annam pond turtle (Mauremys annamensis) is one of the most endangered turtle species in Vietnam and in the world. It is not known from any protected area. Despite likely being extinct in the wild,  ex situ conservation programs have been implemented in time with a high number of individuals being kept and bred in zoos and stations and now ready for restocking actions.
Photo by Thomas Ziegler. Licence: CC-BY.

In General, Vietnam is considered a country with high conservation priority due to habitat loss and overharvesting for trade, traditional medicine and food.

Globally, reptiles are considered a group of special conservation con­cern, as they play an important role in almost all ecosystems and often have relatively small distri­bution ranges, making them especially vulnerable to human threats.

***

Original source:

Stenger L, Große Hovest A, Nguyen TQ, Pham CT, Rauhaus A, Le MD, Rödder D, Ziegler T (2023) Assessment of the threat status of reptile species from Vietnam – Implementation of the One Plan Approach to Conservation. Nature Conservation 53: 183 221. https://doi.org/10.3897/natureconservation.53.106923

***

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Europe’s very own dinosaurs – the enigmatic Late Cretaceous rhabdodontids

Despite being widespread and abundant, these gregarious herbivores vanished in Western Europe around 69 million years ago due to environmental changes, while surviving longer in Eastern Europe.

When you think of dinosaurs, you might automatically imagine iconic dinosaurs as Tyrannosaurus and Triceratops. But at the same time when these were stomping on the ancient coastal plains of North America, some of their very distant cousins were reigning over Europe’s lands.

Life reconstructions and size comparison of three rhabdodontids. From left to right: Mochlodon suessi from eastern Austria (the smallest member of the group), Rhabdodon priscus from southern France (the largest member of the group), and Transylvanosaurus platycephalus from western Romania (the most recently named member of the group). Also shown is the silhoutte of a human (1.8 m tall) for scale. Reconstruction by Peter Nickolaus

During the Late Cretaceous (between 100 and 66 million years ago), Europe was an extensive archipelago with numerous small and large islands situated in a shallow tropical sea, the so-called Late Cretaceous European Archipelago. The dinosaur groups that lived on these islands were very different from those of other continents, often being much smaller than their mainland relatives. These European dinosaurs include small and medium-sized carnivorous theropods, armoured ankylosaurs, long-necked sauropods, duck-billed hadrosaurs, and rhabdodontids.

Skeletal reconstruction of Zalmoxes robustus. Scale bar: 20 cm

Arguably one of the most important of these European dinosaur groups is the family Rhabdodontidae, which groups together the most common medium-sized herbivores of the Late Cretaceous European Archipelago. A joint research team from the Universities of Tübingen (Germany), Budapest (Hungary) and Bucharest (Romania) recently reviewed what we know about these peculiar dinosaurs in a new paper published in the journal Fossil Record.

Generally, rhabdodontid dinosaurs were small to medium-sized animals with an overall body length of approximately 2–6 m. “They were probably habitually bipedal herbivores, characterised by a rather stocky build, with strong hind limbs, short forelimbs, a long tail, and a comparatively large, triangular skull that tapers anteriorly and ends in a narrow snout,” explains Felix Augustin, lead author of the study in Fossil Record.

“They had a relatively robust skull with strong jaws, large teeth and a pointy beak that was covered in keratin, demonstrating that these dinosaurs were well-adapted to eating tough plants.”

In some instances, fossil remains of several individuals of different ages have been found together, indicating that they were gregarious.

Although they died out well before the mass extinction in Western Europe (about 69 million years ago), potentially due to environmental changes that affected the plants they fed on, they survived much longer in Eastern Europe and were among the last non-avian dinosaurs still present before the end of the Cretaceous (66 million years ago).

Interestingly, fossils of rhabdodontids have only been found in Europe and only in rocks ranging in age from 86–66 million years ago, so they were endemic to the Late Cretaceous European Archipelago.

The group currently comprises nine different species from five European countries (France, Spain, Austria, Hungary, and Romania).

Palaeogeographic map of Europe during the latest Cretaceous (late Campanian), with the location of the most important rhabdodontid-bearing assemblages. 1 Transylvania, western Romania. 2 Iharkút, western Hungary. 3 Muthmannsdorf, eastern Austria. 4 Eastern southern France. 5 Western southern France. 6 Northern Spain. 7 Central Spain.

“The first rhabdodontid species was scientifically named more than 150 years ago and the last one as recently as November 2022, so, although the group looks back to a long research history, we still have much to learn about it,” says Felix Augustin.

“Generally, our portraying of the world of dinosaurs is heavily biased towards the well-known North-American and Asian dinosaur faunas,” he adds.

Type specimens of some rhabdodontid species. A. The original drawing of the lectotype of Rhabdodon priscus, MPLM 30, a partial left dentary. The specimen has since deteriorated (Pincemaille-Quillevere 2002). Modified after Matheron (1869). B. Holotype of Rhabdodon septimanicus, MDE D-30, an incomplete right dentary. Photo kindly provided by Eric Buffetaut. C. Lectotype of Mochlodon suessi, PIUW 2349/2, a right dentary. D. Holotype of Mochlodon vorosi, MTM V 2010.105.1, a left dentary. E. Holotype of Zalmoxes robustus, NHMUK R.3392, a right dentary. Photo kindly provided by János Magyar. F. Holotype right dentary of Zalmoxes shqiperorum, NHMUK R.4900. Note that the holotype of Z. shqiperorum also comprises several postcranial elements that presumably belong to the same individual as the dentary. Photo kindly provided by János Magyar.

Dinosaur fossils from the Late Cretaceous are much rarer in Europe than in North America or Asia, and thus far no complete skeleton of a rhabdodontid has been described. Even though they were so abundant and common in the Upper Cretaceous of Europe, several key aspects about them remain poorly known, including their detailed body proportions, their posture and locomotion, as well as their feeding behaviour.

“In the past decades, a wealth of new, and often well-preserved, rhabdodontid fossils has been discovered throughout Europe, the majority of which still remains to be studied,” says Felix Augustin. “A joint research project is currently underway to study the available fossil material in order to gain new insights into the evolution and lifestyle of these fascinating yet still poorly known dinosaurs.”

Original source:

Augustin FJ, Ősi A, Csiki-Sava Z (2023) The Rhabdodontidae (Dinosauria, Ornithischia), an enigmatic dinosaur group endemic to the Late Cretaceous European Archipelago. Fossil Record 26(2): 171-189. https://doi.org/10.3897/fr.26.108967

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Curious and cryptic: new leaf insects discovered

Research team describes seven new species of walking leaves in ZooKeys

An international research team including the University of Göttingen has described seven previously unknown species of leaf insects, also known as walking leaves. The insects belong to the stick and leaf insect order, which are known for their unusual appearance: they look confusingly similar to parts of plants such as twigs, bark or – in the case of leaf insects – leaves.

An adult female of Pulchriphyllium anangu, one of the newly described species, observed July 2016 at Kadumane Estate, India by iNaturalist user @ashwinv (Ashwin Viswanathan) https://www.inaturalist.org/observations/29374627)

This sophisticated camouflage provides excellent protection from predators as well as presenting a challenge to researchers. Genetic analysis enabled the researchers to discover “cryptic species”, which cannot be distinguished by their external appearance alone. The findings are not only important for the systematic study of leaf insects, but also for the protection of their diversity. The results were published in the scientific journal ZooKeys.

Taxonomy – meaning the naming, description and classification of species – is difficult in the case of leaf insects: individuals of different species can be difficult to tell apart, yet there can be huge variations within a species. “Individuals of different species are often counted as belonging to the same species based on their appearance. We were only able to identify some of the new species by their genetic characteristics,” explains the Project Lead, Dr Sarah Bank-Aubin, Göttingen University’s Animal Evolution and Biodiversity Department.

An adult female of Pulchriphyllium crurifolium, observed September 2019 at Sans Souci, Mahé, Seychelles, by Juan Jose Areso uploaded by iNaturalist user @liahg (Amalia Herrera Grau) (https://www.inaturalist.org/observations/76082181)

Some individual insects from India were previously thought to belong to a species that is widespread in Southeast Asia. But now the researchers have found out that they are a completely new species of leaf insects. Bank-Aubin emphasises: “The finding is important for species conservation: if all the individuals die out in India, it is not just a group within a species that is reduced, as was previously thought. In fact, a whole distinct species is being wiped out. This means that the Indian species is particularly important to protect.” Other newly discovered species come from Vietnam, Borneo, Java and the Philippines.

Three of the newly discovered leaf insect species. Left to right: A female of Phyllium ortizi, an adult male of Pulchriphyllium anangu observed November 2019 in Pakkalakunja, Karnataka, India by iNaturalist user @sanath_ramesh_manimoole (Sanath R M) (https://www.inaturalist.org/observations/103401996), and a female of Pulchriphyllium bhaskarai.

The researchers from Göttingen University worked with leaf insect expert Royce Cumming, City University New York. This research collaboration has led to the identification of over twenty new species. Dr Sven Bradler, who has been researching the evolution of stick and leaf insects at the University of Göttingen for more than 20 years, explains: “There are around 3,500 known species of stick and leaf insects and there are currently just over 100 described species of leaf insect. Although they only make up a small fraction of this diverse family of insects, their spectacular and unexpected appearance makes them unique.”

Research article:

Cumming RT, Le Tirant S, Linde JB, Solan ME, Foley EM, Eulin NEC, Lavado R, Whiting MF, Bradler S, Bank S (2023) On seven undescribed leaf insect species revealed within the recent “Tree of Leaves” (Phasmatodea, Phylliidae). ZooKeys 1173: 145-229. https://doi.org/10.3897/zookeys.1173.104413

Press release originally published by the University of Göttingen. Republished with permission.

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Fighting the spread of the spotted lanternfly with a new data science tool

“The lydemapr package will aid researchers, managers and the public in their understanding, modelling and managing of the spread of this invasive pest,” says Dr. De Bona, the lead author of the study.

“Stomp, squash, smash” has been the accompanying soundtrack to the expansion of an odd-looking bug through the Eastern US. The spotted lanternfly, a large planthopper native to Asia, has been popularized in media outlets as the most recent enemy one ought to kill on sight.

Spotted lanternflies. Photo by Matthew Helmus

This charismatic insect was first discovered in the US in Berks county, Pennsylvania, in 2014, likely the result of an accidental introduction alongside shipments of landscaping materials. Since then, the invasive pest has spread throughout the country, fueled by its ability to hitch rides undetected on cargo and passenger vehicles, and aided by the widespread presence of one of its favorite food sources, the tree of heaven, another invasive in North America. As of 2023, it has been found in 14 US states.

Unfortunately, this species is not picky when it comes to the plants it consumes, favoring both crops and ornamentals, and showing a particular preference for cultivated grape. This dietary choice has impacted several wine-making areas throughout Pennsylvania and New York state, and is threatening important wine hubs on the Western coast of the US.

When it comes to controlling the spread of this pest, two of the main challenges for researchers and field managers alike are to 1) know where this species is today so that eradication campaigns can be targeted and 2) predict where it will be tomorrow, to invest in prevention practices. Both efforts rely on accurate and extensive knowledge of its past and present distribution.

Many state and federal agencies, as well as individual research institutions, have been involved in conducting surveys to detect this bug in the field. In addition, a campaign to raise public awareness has fostered the development of self-reporting tools citizens can use to track sightings of this insect. Unfortunately, given the different practices adopted by these parties, the data on the presence of spotted lanternfly are scattered and hard to access, which makes it harder to assess and manage its spread.

Spotted lanternflies. Photo by Matthew Helmus

The need to put together a current, comprehensive, consistent and openly available dataset pushed researchers at Temple University to take action. A research group led by Dr. Matthew Helmus has been closely monitoring the spread of this invasive pest since its inception, contacting institutions and collecting data. In a recent work published in the journal NeoBiota, Dr. Helmus and Dr. Sebastiano De Bona, together with collaborators across several agencies, put together an anonymized and comprehensive dataset that collected all records of spotted lanternfly in the US to date. These records come from a plethora of sources, from control actions, citizen-science projects, and research efforts. The resulting dataset contains highly detailed data (at 1 km2 resolution) with yearly information on the presence or absence of spotted lanternflies, the establishment status of this pest, and estimated population density, across over 650,000 observations.

“The lydemapr package will aid researchers, managers and the public in their understanding, modelling and managing of the spread of this invasive pest,” says Dr. De Bona, the lead author of the study.

The scientists hope that this package will make forecasting the spread of the spotted lanternfly easier and foster more effective collaboration between agencies and researchers.

Research article:

De Bona S, Barringer L, Kurtz P, Losiewicz J, Parra GR, Helmus MR. 2023. lydemapr: an R package to track the spread of the invasive Spotted Lanternfly (Lycorma delicatula, White 1845)(Hemiptera, Fulgoridae) in the United States. NeoBiota 85: 151–168, DOI: 10.3897/neobiota.86.101471

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Alternative host-searching strategy reported for the ant parasitoid wasp Ghilaromma orientalis

“In our ten years of frantic observation, we were fortunate enough to observe the parasitic behavior of G. orientalis a single time.”

Guest blog post by Yu Hisasue, Kazuhiko Konishi, and Kenji Takashino

Parasitoid wasps have developed behaviors to adapt to the ecology of various hosts and overcome their means of avoiding parasitism. Host searching behavior is a crucial stage for parasitoids, not only for efficient host search, but also for competing with other parasitoids that exploit the same host as a resource. A variety of such behaviors has been reported, including utilizing chemical or sonic cues. Parasitoid wasps select their strategies based on their own morphology, their host, and the host’s habitat.

Parasitoid wasps that challenge the ant society are known to have highly specialized morphologies and behaviors.

Female of Ghilaromma orientalis hanging from the grass above the ant trail with her head facing the trail.

All members of the subfamily Hybrizontinae are ant parasitoids, and specialize to the ant society, representing the third most diverse group of ant parasitoid wasps after Eucharitidae and Neoneurini. The oviposition behavior has been reported for three species belonging to three different genera in Hybrizontinae: Ogkosoma cremieri, Neohybrizon mutus, and Hybrizon buccatus. In these species, the females hover over an ant trail, and when they come across ant larvae carried by workers, they attack and lay eggs on the ant larvae.

No reports have been made for oviposition behavior in the genus Ghilaromma. G. orientalis was suggested to be a specialist of Lasius nipponensis, but its oviposition behavior was unknown.

Female Ghilaromma orientalis using her front legs to contact an ant larva and directing her abdomen towards it, while maintaining a firm grip on the grass with her hind legs.

In our ten years of frantic observation, we were fortunate enough to observe the parasitic behavior of G. orientalis a single time. On 20 October 2015, Kenji Takashino observed the oviposition and took pictures of it on his phone.

He noticed that the female, hung on the grass growing along the ants’ trail on its hind legs with its head down, and when workers with larvae pass by, stretched its abdomen toward the larvae with its hind legs remaining on the grass.

We published these first observations of the oviposition behavior of G. orientalis in a research article in the Journal of Hymenoptera Research.

Female Ghilaromma orientalis maintaining a firm grip on the grass with her hind legs while adjusting her body position to oviposition onto a larva being carried away by an ant.

There are different merits and demerits of the two strategies in Hybrizontinae. The active type has the advantage of covering a wider search area and enabling the movement of the parasitoid to areas where the ants carrying larvae are located. However, this strategy has the drawback that hovering of parasitoid wasps over an ant trail alerts the ants and prevents larva-carrying ants from exiting the nest entrance or covered area. In addition, ants have been observed to open their mandibles to threaten hovering wasps, which then occasionally fail to fly or get captured by worker ants.

Workers of Lasius nipponensis with their mandibles open, alerted to the hovering Ogkosoma cremieri.

The ambush type has the limitation of a narrow search area. As ant larvae are not always conveniently transported by workers close to the wasp, narrowing the search area directly leads to a decrease in parasitic opportunities. However, the ambush type strategy affords G. orientalis the advantage of laying eggs without being noticed by ants and in a narrow environment where wasps cannot fly in active type.

In addition, we report a new host ant (Lasius cf. fuliginosus) for G. orientalis. Some members of this species group are known to transport their larvae outside the nest. Therefore, it is plausible that G. orientalis may use not only a single ant species, but multiple L. fuliginosus-group species that have a habit of transporting larvae outside the nest.

Although we made only one observation of the wasp, we compared and discussed the other ecological information and parasitic behavior of closely related species using observations, literature, and studies on the parasitic behavior of other well-studied parasitoid wasps.

Research article:

Hisasue Y, Konishi K, Takashino K (2023) An alternative host searching strategy found in the subfamily Hybrizontinae (Hymenoptera, Ichneumonidae). Journal of Hymenoptera Research 96: 629-639. https://doi.org/10.3897/jhr.96.106836

Pensoft’s statement on the European Union’s Conclusions on OA scholarly publishing

We are firm supporters of healthy competition that drives innovation and revolutionary technologies, while supporting freedom of choice.

On behalf of Pensoft Publishers, we express our support for the Conclusions on high-quality, transparent, open and equitable scholarly publishing, recently published by the Council of the European Union. We do share all concerns articulated in the document that highlight major inequities and outstanding issues in the scholarly publishing environment.

In our opinion, it is of utmost importance to promptly address the existing issues in the publishing system, where healthy competition can thrive and contribute to a reality safe from potential mono-/oligopolies and corporate capture.

We firmly believe that only an industry that leaves room for variously-scaled pioneers and startups is capable of leading a long-awaited shift to a high-quality, transparent, open and equitable scholarly publishing landscape aligning with the principles of FAIRness.

Yet, we shall acknowledge that the industry has so far failed to eradicate the most fundamental flaw of the past. In the beginning, the main aim of the Open Access (OA) movement was removing the barrier to access to publicly funded scientific knowledge and scrapping costly subscription fees.

Recently, however, the industry’s biggest players merely replaced it with a barrier to publication by introducing costly Article Processing Charges (APCs) and “big deals” signed between top commercial publishers and academic institutions or national library consortia. 

As a result, small and middle-sized open-access publishers, which have, ironically, been the ones to lead the change and transition to OA by default and oppose the large commercial publishers’ agenda, were effectively pushed out of the scene. Further, we are currently witnessing a situation where OA funds are mostly going to the ones who used to oppose OA.

So, we strongly support measures that ensure an inclusive and FAIR competition, which could in turn prompt quality, sustainability and reasonable pricing in scholarly publishing. In our opinion, an environment like this would actually foster equality and equity amongst all publishers, either small, large, non-profit, commercial, institutional or society-based. 

One of the main points of the conclusions is a recommendation for a general use of the Diamond OA model, where no charges apply to either researchers or readers. While we fully support the Diamond OA model, we wish to stress on the fact that considerable concerns about the sustainability of existing Diamond OA models remain.

On the one hand, there are OA agreements (also known as read-and-publish, publish-and-read, transformative agreements etc.), typically signed between top publishers and top research institutions/consortia. This OA model is often mistakenly referred to as “Diamond OA”, since authors affiliated with those institutions are not concerned with providing the APC payment – either by paying themselves or applying for funding. Instead, the APCs are paid centrally. Most often, however, journals published by those publishers are still directly charging authors who are not members of the signed institutions with, in our opinion, excessive APCs. Even if those APCs are covered by a signed institution, these are still considerable funds that are being navigated away from actual research work. 

On the other hand, there are independent researchers, in addition to smaller or underfunded institutions, typically – yet far from exclusively – located in the developing world, who are effectively being discriminated against. 

In conclusion, this type of contracts are shutting away smaller actors from across academia just like they used to be under the subscription-based model. Hereby, we wish to express our full agreement with the Council of the European Union’s conclusion, that “it is essential to avoid situations where researchers are limited in their choice of publication channels due to financial capacities rather than quality criteria”.

There are also several alternative OA models designed to lessen the burden of publication costs for both individual researchers, libraries and journal owners. However, each comes with its own drawbacks. Here – we believe – is where the freedom of choice is perhaps most needed, in order to keep researchers’ and publishers’  best interests at heart. 

One of those alternatives is open-source publishing platforms, which – by design – are well-positioned to deliver actual Diamond OA for journals, while maintaining independence from commercial publishers. However, the operational model of this type of publishing and hosting platforms would most often only provide a basic infrastructure for editors to publish and preserve content. As a result, the model might require extra staff and know-how, while remaining prone to human errors. Additionally, a basic technological infrastructure could impede the FAIRness of the published output, which demands advanced and automated workflows to appropriately format, tag semantically and export scientific outputs promptly after publication.

Similarly, large funders and national consortia have put their own admirable efforts to step up and provide another option for authors of research and their institutions. Here, available funds are allocated to in-house Diamond OA publishing platforms that have originally been designed according to the policies and requirements of the respective funding programme or state. However, this type of support – while covering a large group of authors (e.g. based in a certain country, funded under a particular programme, and/or working in a specific research field) – still leaves many behind, including multinational or transdisciplinary teams. Additionally, due to the focus on ‘mass supply’, most of these OA publishing platforms have so far been unable to match their target user base with the appropriate scale of services and support.

What we have devised and developed at Pensoft with the aim to contribute to the pool of available choices is an OA publishing model, whose aim is to balance cost affordability, functionality, reliability, transparency and long-term sustainability. 

To do so, we work with journal owners, institutions and societies to create their own business and operational model for their journals that matches two key demands of the community: (1) free to read and free to publish OA model, and, (2) services and infrastructure suited for Diamond OA at a much lower cost, compared to those offered by major commercial publishers.

In our opinion, independent small publishers differentiate from both large commercial publishers and publicly funded providers by relying to a greater extent on innovative technology and close employee collaboration.

As a result, they are capable of delivering significantly more customisable solutions – including complete packages of automated and human-provided services – and, ultimately, achieving considerably lower-cost publishing solutions. Likewise, they might be better suited to provide much more flexible business models, so that libraries and journal owners can easily support (subsets of or all) authors to the best of their capabilities.

While we realise that there is no faultless way to high-quality, transparent, open and equitable scholarly publishing, we are firm supporters of an environment, where healthy competition prompts the continuous invention and evolution of tools and workflows

Our own motivation to invest in scholarly publishing technology and its continuous refinement and advancement, coupled with a number of in-house and manually provided services, which is reflected in our APC policies, aligns with the Council’s statement that “scientific practices for ensuring reproducibility, transparency, sharing, rigour and collaboration are important means of achieving a publishing system responsive to the challenges of democratic, modern and digitalised societies.”

Our thinking is that – much like in any other industry – what drives innovation and revolutionary technologies is competition. To remain healthy and even self-policing, however, this competition needs to embrace transparency, equity and inclusivity.

Last, but not least, researchers need to have the freedom to choose from plenty of options when deciding where and how to publish their work!

Persian Gold Tarantula: a new species from Iran for Tarantula Appreciation Day 2023

Its “woolly, golden hairs” were one of the features so unique it was not necessary for additional individuals to be collected

Guest blog post by Dr Alireza Zamani (@Arachno_AZ)

In the latest issue (1174th) of the scientific open-access journal ZooKeys, you can find our paper describing a new species of tarantula (family Theraphosidae) found in northwestern Iran. 

This species belongs to Chaetopelma, a relatively small genus, distributed in Crete, Sudan, and the Middle East, and one of the only two tarantula genera inhabiting the Mediterranean region. 

Our discovery is significant for several reasons. Firstly, it marks the first record of this genus in Iran and the third known species of tarantulas in this country. Additionally, it extends the known range of Chaetopelma spiders by almost 350 km eastwards. 

We named this species Chaetopelma persianum, paying homage to its occurrence in Iran, which has historically been known as Persia. As a potential common name, we suggest “Persian Gold Tarantula”, where we are also making a reference to the “woolly, golden hairs’’ on its carapace.

The newly described tarantula species (Chaetopelma persianum) seen in a defensive posture.
Photo by Kari Kaunisto. 

For the purpose of our study, we only had one specimen: a female with a leg span of almost 9 cm, available. Yet, its distinct characteristics allowed us to confidently differentiate it from other known Chaetopelma species. 

This tarantula is an obligate burrower and inhabits high elevations in well-vegetated mountainous regions of the northern Zagros Mountains. The holotype specimen was collected from a self-made ground burrow on sloped rocky ground, amidst sparse low vegetation and grasses. 

It all started with local nature enthusiast Mehdi Gavahyan, who photographed a wandering male and sent me the photo. When I figured it was most likely an undescribed species, I asked him to team up with Amir Hossein Aghaei, a nature enthusiast and a friend of mine, and send me specimens of these spiders for further examination. Unfortunately, they only managed to collect that one female. However, it turned out to be enough for us to describe the Persian Gold Tarantula!

Additionally, thanks to local citizen scientists and naturalists, we later also got hold of photos of another two males of the same genus, taken very close to the type locality of the new species: one in Sardasht in West Azerbaijan Province of Iran, and the other in the surroundings of Sulaymaniyah in Iraq. While it is highly probable that both these males belong to Ch. persianum, this cannot be confirmed until further examination of collected material from both sexes is conducted.

Burrow of Persian Gold Tarantulas in West Azerbaijan Province, Iran. The arrow in the photo on the right indicates the location of the burrow. Photos by Amir Hossein Aghaei.

During our research, we also noted that one species of Chaetopelma described from Cameroon is misclassified and should be transferred to another genus. However, this transfer is pending until the type material undergoes examination.

Looking ahead, we believe that more comprehensive investigations employing integrative methods would greatly benefit the taxonomy of Chaetopelma

Habitat of the newly described Persian Gold Tarantula (Chaetopelma persianum) in West Azerbaijan Province, Iran.
Photo by Amir Hossein Aghaei.

For example, Ch. olivaceum, a species with seven junior synonyms and one of the broadest ranges within the entire family, covering an area of approximately 1,493,978 km2, might potentially have cryptic species within its range. Moreover, the disjunct distribution of Ch. olivaceum in Turkey, where it occurs both in the southern regions and as far north as Istanbul, raises the possibility of distinct species status for the latter population, which is geographically isolated from the rest of the recorded occurrences. Integrative studies incorporating molecular data could offer insights into this. 

Additionally, further collection efforts in lesser-sampled or completely unexplored regions, such as Saudi Arabia, Syria, Iraq, eastern Turkey and western Iran, could lead to the discovery of additional Chaetopelma species or records. These findings would be instrumental in gaining a more comprehensive understanding of the taxonomy and distribution of this genus.

Research paper:

Zamani A, West RC (2023) A new species of Chaetopelma Ausserer, 1871 (Araneae, Theraphosidae) from Iran. ZooKeys 1174: 75-84. https://doi.org/10.3897/zookeys.1174.109135 

***

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Smithsonian Expedition Yields a New Species of Deep-Sea Coral

Collected from the deep waters off Puerto Rico, the species is a member of an enigmatic, and threatened, group of corals

When people think about corals, most picture the multi-hued reef-builders that reside in balmy waters off tropical beaches. But not all corals stick to the shallows. For example, most members of the order Antipatharia do not live within 160 feet of the surface. Some even reside at depths deeper than 26,000 feet. Commonly known as black corals due to their ink-colored skeletons, these corals are staples of deep-sea ecosystems around the world.

However, black corals remain enigmatic due to the challenges of studying them in the deep sea. This makes it difficult for scientists to assess how black corals, whose skeletons (which are made out of chitin, the same material that composes an insect’s exoskeleton) are prized components of jewelry, are responding to threats like poaching, ocean acidification and climate change.

“Describing these species is fundamental information to make conservation decisions,” said Jeremy Horowitz, a postdoctoral researcher at the National Museum of Natural History who specializes in studying black corals. “You have to know it before you can protect it.”

Jeremy Horowitz, a postdoctoral researcher in the museum’s invertebrate zoology department, examines a coral specimen during a subsequent expedition off Puerto Rico earlier this year. Credit: Jeremy Horowitz, NMNH

In a paper published this week in the journal ZooKeys, Horowitz and his colleagues at the museum and the University of Puerto Rico described Aphanipathes puertoricoensis, a new species of black coral that sports branching features found in multiple coral groups that diverged roughly 100 million years ago.

Taken by the deep-sea ROV Global Explorer, this image offered the scientists the first glimpse of the black coral species in its natural habitat. Image courtesy of Illuminating Biodiversity in Deep Waters of Puerto Rico 2022

The new black coral species was discovered in April 2022 during a joint Smithsonian and National Oceanic and Atmospheric (NOAA) expedition to a stretch of the Caribbean Sea just south of Puerto Rico. Here, the seafloor bottoms out into a network of deep-sea canyons and seamounts that remain largely unexplored.

The expedition, led by research zoologist Andrea Quattrini, the museum’s curator of corals and one of Horowitz’s co-authors on the new paper, aimed to explore some of this abyssal terrain and catalog some of the creatures that reside there. Many of these animals live far deeper than human divers can go. So the researchers deployed a remotely operated unmanned vehicle (ROV) called the Global Explorer to depths as deep as 4,000 feet below the ocean’s surface.

Andrea Quattrini, the expedition’s lead researcher, aboard the Nancy Foster research vessel. Image courtesy of Illuminating Biodiversity in Deep Waters of Puerto Rico 2022

Over seven dives, the ROV mapped 180 square nautical miles of the deep-sea floor. It collected a suite of biological samples and hours of footage for the researchers to parse on the research vessel above. They observed ghostly, blob-like predators called tunicates, gangly bristle stars, vibrant comb jellies and tiny crustaceans with fused eyes that live inside glass sponges. They even collected a colony of small invertebrates called bryozoa that had not been collected since a Smithsonian expedition to the Puerto Rico Trench in 1933.

One of the deep-sea anemones observed during the expedition. Image courtesy of Illuminating Biodiversity in Deep Waters of Puerto Rico 2022

They also found a multitude of species new to science. While exploring a canyon nearly 1,200 feet below the surface, the ROV came across a scraggly patch of black coral reminiscent of a deep-sea tumbleweed. As the ROV snipped off one of the coral’s spindly branches, Quattrini sent Horowitz, who was back in Washington, a picture of the coral on the ROV’s live feed. “She shared a picture of this coral and I immediately had no idea what it was,” Horowitz said.

When the expedition’s trove of specimens arrived in Washington, Horowitz could finally take a closer look at the puzzling coral. With long, coiled branches emanating from a short stalk like a tiny tree, the coral sported features found in multiple genera, or groups, of black coral that diverged long ago.

A microscopic close-up of the black coral’s spines taken with the help of the museum’s scanning electron microscope. Credit: Jeremy Horowitz, NMNH

To assign the new species in the right group, Horowitz placed a fragment of the coral specimen underneath a high-powered scanning electron microscope at the museum. That gave him a microscopic view of the miniscule spines that line the coral skeleton. Like a fingerprint, a coral species’ spines have their own distinct shape. Comparing these spines to known black coral species allowed Horowitz to get a better idea of where this new species may slot into the black coral family tree. To be sure, the researchers also used cutting edge techniques to compare the new species’ genetic code with other corals.

All this work allowed the researchers to find a taxonomic home for the new species in the genus Aphanipathes. They christened the black coral with the species name puertoricoensis in homage to the island near where it was found.

Discarded fishing gear sits on a thicket of black coral in the deep sea off of Puerto Rico. Image courtesy of Illuminating Biodiversity in Deep Waters of Puerto Rico 2022

Horowitz believes its resemblance to other groups of black coral reveals how helpful a simple body type is for survival in the deep-sea. “This simple morphological structure is evolving over and over again, probably because the conditions are the same in these different areas,” he said.  “This simple structure is what works.”

The team is still examining the specimens collected and expects to name additional new species in the near future. There are also plans to go back and conduct further field research in the deep-sea canyons and ridges off Puerto Rico. “Every time we go back to this region, we find new species,” Horowitz said.

But there is also plenty to uncover closer to home. The piece of black coral from Puerto Rico recently joined the museum’s 4,000 other black coral specimens — the largest such collection in the world. Many of these black coral specimens likely represent undescribed species hiding in plain sight. According to Horowitz, “we don’t even have to go offshore to find new species.”

Reference:

Horowitz J, Opresko DM, González-García MP, Quattrini AM (2023) Description of a new species of black coral in the family Aphanipathidae (Anthozoa, Antipatharia) from Puerto Rico. ZooKeys 1173: 97-110. https://doi.org/10.3897/zookeys.1173.104141

Story originally published by the Smithsonian Magazine. Republished with permission.

Beware of scientific scams! Tips to avoid predatory publishing in biological journals

Predatory publishing has been growing exponentially, with severe consequences for society and the environment.

Guest blog post by Cássio Cardoso Pereira, Gabriela França Fernandes, and Walisson Kenedy Siqueira

We are bombarded day and night with slot-machine invitations from journals, books, and events such as congresses and lectures. Predatory publishing has reached alarming levels in biology, which is why we published an editorial in the journal Neotropical Biology and Conservation to alert the community, show the modus operandi of these publishers, and pass on good practices so that researchers, especially beginners, can escape this trap.

Piggybacking on the open access movement, numerous predatory publishers have emerged in search of easy profits. These cybercriminals take advantage of the publish-or-perish culture without providing any information about their peer-review protocols, concerned not with the scientific, bibliographic, or ethical aspects of publishing, but with the money received from authors.

The number of predatory publishers has grown exponentially in recent years and spread across all areas of knowledge, including biology. It is a common practice of these journals, often with an equally fake editorial staff, to send electronic invitations to potential authors to publish articles. These invitations are often facilitated by initial screenings of the emails of corresponding authors available on the internet. The emailed invitations from the supposed editors often stress that the author’s work is sound and, since it has already gone through the scrutiny of the editorial board, requires only the payment of a fee to publish it, with no need for further peer review.

Invitations to join the editorial board of these journals are also frequent, mostly intended to take advantage of the scientists’ prestige. Instead of editing articles, these invited editors are used as poster boys, i.e., they have their names published on the journal’s website, thus attracting unsuspecting authors to submit their manuscripts.

These journals are generally not included in the directory of open access journals (DOAJ) and are not indexed in the main bibliometric databases, such as Google Scholar, SciELO, Scopus, and Web of Science, for the simple reason that they do not meet their inclusion criteria. The websites of these journals often have little information about the editorial board, have a fake International Standard Serial Number (ISSN), lack transparency regarding their scope, provide no indication of a policy of retraction, have no transparency regarding copyright transfer, and provide very vague contact information, often omitting the address of the journal’s office.

In addition to papers, there are also invitations to publish books and book chapters with fake International Standard Book Numbers and dubious editorial boards. There is also a flood of invitations to predatory meetings, such as online conferences, symposia, workshops, and lectures. These often have websites that are equally confusing and never linked to a university or a postgraduate program. Above all, one should consult advisors, supervisors, or senior colleagues about the invitation and the sender’s academic reputation. In any case, one must pay attention not only to the citation metrics but also, mainly, to their editorial board, ISSN, ISBN, contact information, and relationships with recognized institutions.

When we analyze the impacts of predatory publishing on the scientific community, the worst problems are:

  • the dissemination of erroneous information about scientific problems of interest
  • the facilitation of plagiarism
  • the waste of public resources intended for publication
  • the appointment of researchers at universities and research institutes based on curricula full of doubtful publications, generating negative cascading effects that undermine higher education as a whole.

The damage done to society can be even worse. Governments, large companies, and decision-makers can be misled by false information, resulting in attitudes that undermine responses to major human problems such as climate change, biodiversity, and pandemics.

Efforts to fight predatory publishers require collaboration and support at higher levels. Governments need to create regulatory agencies that carefully and systematically evaluate the activities carried out by scientific journals. Science funding agencies should require that publication fees be paid only to publishers that adhere to an internationally recognized set of transparency and ethical rules. We need to discuss our values and incentives in the academic community, so we can start prioritizing quality over quantity. This would provide a reference point for research, help design coherent interventions, and improve information and public policy in favor of society and the environment.

Reference:

Pereira CC, Mello MAR, Negreiros D, Figueiredo JCG, Kenedy-Siqueira W, Maia LR, Fernandes S, Fernandes GFC, Ponce de Leon A, Ashworth L, Oki Y, de Castro GC, Aguilar R, Fearnside PM, Fernandes GW (2023) Beware of scientific scams! Hints to avoid predatory publishing in biological journals. Neotropical Biology and Conservation 18(2): 97-105. https://doi.org/10.3897/neotropical.18.e108887

Uncovering the hidden value of urban rivers: Study reveals community perceptions of ecosystem services

The case of the Zamora and Malacatos rivers in Loja, Ecuador

Guest blog post by Natalia Alvarado-Arias, Vinicio Moya-Almeida, Francisco Cabrera-Torres, and Andrea Medina-Enríquez

Urban rivers play a crucial role in providing ecosystem services that contribute to the social well-being and quality of life of urban inhabitants. However, rapid urbanization has led to the progressive degradation of these rivers, affecting their capacity to deliver these services and generating significant socioecological impacts. A groundbreaking study conducted in the Zamora and Malacatos Rivers in Loja, Ecuador, performed a participatory mapping of the non-monetary social values (both positive and negative) and their associated ecosystem services. This research, published in the journal One Ecosystem, aimed to understand community perceptions and preferences in the context of degraded landscapes, using a complementary analysis approach to traditional methods.

Oblique aerial photographs of the research area captured with unmanned aerial vehicles (2021). Left: Malacatos River. Right: Zamora River

The methodology employed in this study involved data collection and analysis using ArcGIS Survey123 Connect (ESRI 2020), a digital survey tool that facilitated easy data collection from participants. Additionally, The Social Values for Ecosystem Services (SolVES 4.0) tool was utilized, integrating participatory survey data and environmental data to assess and map the social values associated with ecosystem services. This combination of technological tools allowed for comprehensive analysis and visual representation of the results.

The study findings revealed that the most relevant social values encompassed learning, aesthetics, therapy, displeasure, deficient and inaccessible infrastructure, and the threat of flooding. Different spatial patterns were identified for each of these social values, with the horizontal distance to green areas emerging as a significant environmental variable contributing to these patterns.

Spatial distribution of positive social values.

These findings enhance our understanding of the social values and preferences associated with ecosystem services in urban river contexts. Furthermore, they provide valuable insights for identifying areas of opportunity and conflict, informing community planning, and enabling effective management of the urban landscape. The significance of this study lies in its novel approach, considering non-monetary social values, and its application in a city in the Global South, where previous research has predominantly focused on the Global North.

The degradation of urban rivers and the resulting socioecological impacts are a growing concern worldwide. Rivers play a vital role in providing natural resources, species habitats, freshwater supply, and flood control, while also satisfying the social, spiritual, and recreational needs of local communities. However, the processes of rapid urbanization have transformed river ecosystems into monofunctional channels and open sewers, negatively impacting the quality of life of residents.

Spatial distribution of negative social values.

This study emphasizes the importance of considering social values and community preferences when assessing and managing urban rivers. By doing so, opportunities and conflicts can be identified, and management strategies can be developed that are socially accepted and supported. Active community participation is crucial in this process as it allows for the addressing of traditional viewpoints and power asymmetries in planning.

The study employed a participatory and community-based approach, utilizing surveys and digital mapping tools such as ArcGIS Survey123 Connect (ESRI 2020) and The Social Values for Ecosystem Services (SolVES 4.0) to collect and analyze data from multiple social actors. This integration of technological tools and participatory methods allowed for a more comprehensive understanding of the social values and ecosystem services associated with urban rivers.

An urban river. Photo by alcides OTA used under a CC BY-NC 2.0 license.

In summary, this groundbreaking study highlights the importance of urban rivers as providers of ecosystem services and their role in the quality of life of urban communities. By understanding and valuing the social and cultural aspects of river ecosystems, effective management strategies can be developed to promote the restoration and conservation of these critical natural resources. Active community participation is essential in achieving sustainable management of urban rivers and ensuring a prosperous future for future generations.

Research article:

Alvarado-Arias N, Moya-Almeida V, Cabrera-Torres F, Medina-Enríquez A (2023) Evaluation and mapping of the positive and negative social values for the urban river ecosystem. One Ecosystem 8: e101122. https://doi.org/10.3897/oneeco.8.e101122

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