Pensoft blog - Part 94

New Chinese leaf-roller weevil does not know how to roll leaves

A long-term project on insect-seed interactions, currently being carried out by researchers of the Institute of Zoology (Chinese Academy of Sciences) in a subtropical forest near Dujiangyan City, Sichuan, China, revealed the presence of larvae of an unknown weevil species eating the seeds in the pods of a shrubby legume.

Scientists from the Institute of Zoology, China, Xiangyang Lv, Zhishu Xiao, Zhiliang Wang, Runzhi Zhang, and Miguel A. Alonso-Zarazaga, also affiliated with the Museo Nacional de Ciencias Naturales (CSIC), Spain, published the description of the new genus and species, named Evemphyron sinense, and added data on its biology in the open access journal ZooKeys.

Because of its peculiar features, it was difficult to locate the closest relatives of this new species. However, a few characteristic traits of the body and genitalia, strongly pointed to its placement within the tribe Deporaini.

The closest, although seemingly rather far-related to the new species, beetles are considered to be a genus with scattered distribution, stretching from the Russian Far East to the Indian Himalaya.

However, they are smaller weevils whose females cut shoots to lay their eggs. On the other hand, the males in both genera share a peculiar patch of hairs, probably related to pheromone dispersal. Likewise, each species is associated with legumes.

The curious feature of this weevil group (Deporaini) is that the vast majority of its species are leaf-rollers. The females cut a hardwood leaf in a peculiar and mathematical way and roll it, laying one egg inside each one. This behaviour, which is known in other far-related weevils of the same family, seems to have appeared independently in different evolutionary branches. In the case of Deporaini, this behavioural trait evolved after the new genus became a distinct one.

As a result, the new genus is considered to be one of the two most primitive within the tribe. In fact, it might be the most primitive one, taking into account a number of morphological traits as well.

It could be that the new beetle never knew how to roll a leaf to make nests and shelter its offspring.

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Original source:

Lv X, Alonso-Zarazaga MA, Xiao Z, Wang Z, Zhang R (2016) Evemphyron sinense, a new genus and species infesting legume seedpods in China (Coleoptera, Attelabidae, Rhynchitinae).ZooKeys 600: 89-101. doi: 10.3897/zookeys.600.6709

New species of spider discovered ‘next door’ at the borders of cereal fields in Spain

The image that comes to mind when we think of new species being discovered is that of scientists sampling in remote tropical forests, where humans have barely set foot in. However, new species waiting to be discovered can in fact be very close to us, even if we live in a strongly humanized continent like Europe.

Scientists Eduardo Morano, University of Castilla-La Mancha, and Dr Raul Bonal, University of Extremadura, have discovered a new species of spider, formally called Cheiracanthium ilicis, in an area which does not match the image of a pristine habitat at all.

The new species was found in a strongly humanized area in central Spain, specifically, in isolated trees at the borders of cereal fields. These trees, mainly Holm oaks (Quercus ilex), are those remaining of the former oak woodlands that once covered the Iberian Peninsula and which have been cleared for centuries.

The systematic sampling revealed the newly discovered spider had a an exclusive preference for Holm Oaks, as all individuals were collected from the trunks and branches of these trees. Therefore, it was named after this tree’s scientific name “ilicis”.

While adults measure about a centimetre in body length, juveniles are smaller and have greenish colouration that mimics new oak shoots.

The mouthparts are proportionally large, as in the case of other species of the genus, like closely related C. mildei. In the case of the latter, the mouthparts are large enough to penetrate human skin, although the effects of the poison appear mild.

From a conservation perspective, the present study puts forward the need to preserve isolated trees in agricultural landscapes. They are not only a refuge to common forest organisms but to novel species yet to be discovered as well.

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Original source:

Morano E, Bonal R (2016) Cheiracanthium ilicis sp. n. (Araneae, Eutichuridae), a novel spider species associated with Holm Oaks (Quercus ilex). ZooKeys 601: 21-39. doi: 10.3897/zookeys.601.8241

A hair’s breadth away: New tarantula species and genus honors Gabriel García Márquez

With its extraordinary defensive hairs, a Colombian tarantula proved itself as not only a new species, but also a new genus. It is hypothesised that the new spider is the first in its subfamily to use its stinging hairs in direct attack instead of ‘kicking’ them into the enemy.

Described in the open access journal ZooKeys by an international research team, led by Carlos Perafán, University of the Republic, Uruguay, the name of the new spider genus honours an indigenous people from the Caribbean coast region, whose language and culture are, unfortunately, at serious risk of extinction. Meanwhile, its species’ name pays tribute to renowned Colombian author and Nobel laureate for his novel ‘One Hundred Years of Solitude’ Gabriel García Márquez.

The new tarantula, formally called Kankuamo marquezi, was discovered in Sierra Nevada de Santa Marta, Colombia. When examined, the arachnid showed something extraordinary about its defensive hairs and its genitalia. The hairs were noted to form a small oval patch of lance-shaped barbs, hypothesised by the scientists to have evolved to defend their owners by direct contact.

On the other hand, when defending against their aggressors, the rest of the tarantulas in this subfamily need to first face the offender and then vigorously rub their hind legs against their stomachs. Aimed and shot at the enemy, a ball of stinging hairs can cause fatal injuries to small mammals when landed into their mucous membrane (the layer that covers the cavities and shrouds the internal organs in the body). Once thrown, the hairs leave a bald spot on the tarantula’s belly.

“This new finding is a great contribution to the knowledge of the arachnids in Colombia and a sign of how much remains to be discovered,” point out he authors.

“The morphological characteristics present on Kankuamo marquezi open the discussion about the phylogenetics relationship between subfamilies of Theraphosidae tarantulas and the evolutionary pressures that gave rise to the urticating hairs.”

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Original source:

Perafán C, Galvis W, Gutiérrez M, Pérez-Miles F (2016) Kankuamo, a new theraphosid genus from Colombia (Araneae, Mygalomorphae), with a new type of urticating setae and divergent male genitalia. ZooKeys 601: 89-109. doi: 10.3897/zookeys.601.7704

New blind and rare planthopper species and genus dwells exclusively in a Brazilian cave

This cave planthopper species new to science is only the second dwelling exclusively in the subterranean depths of Brazil from its family. Surviving without seeing the light of the day at any point of its life, this species has neither the eyes, nor the vivid colouration, nor the functional wings typical for its relatives.

Yet, these are only part of the reasons why the new planthopper needed to have a separate new genus established for itself. The new species is described by a research team from the Center of Studies on Subterranean Biology, Brazil, in the open access journal Deutsche Entomologische Zeitschrift.

The planthopper is called Iuiuia caeca, with the genus name (Iuiuia) referring to the locality, where it was found, and its species name (caeca) translating to ‘blind’ in Latin. It is predominantly yellowish insect that measures only 3 mm, which is small even by planthopper standards.

At first glance, the new cave planthopper appears as if it has been hiding from human eyes all along. So far, it has been located in a single cave in the Iuiú municipality, Bahia state, Brazil, where the team of Prof. Rodrigo Ferreira, Federal University of Lavras (UFLA), Brazil, spotted the insect. He then contacted cave planthopper specialist at the Museum für Naturkunde, Berlin, Prof. Hannelore Hoch, and collaboratively they decided to document and describe the new species. The limestone cave is yet to be fully explored since it floods during the rainy periods.

In the meantime, the cave’s only entrance is a small opening, which, on the other hand, clearly imposes a huge stability to the atmosphere. Moreover, although the researchers visited the cave on five occasions, they managed to find the species on two of them only. The planthopper was nowhere to be find in the neighbouring subterranean habitats either, which strongly suggests that it is a rare short-range endemic.

Being such a rarity, the blind new planthopper ought to be on the conservation radar. Although the scientists did not notice any signs of the cave having ever been visited by humans before; and its immediate surroundings have not been impacted by mining activities, yet, such threat is not to be excluded. In fact, the area is being currently evaluated for its potential for limestone extraction.

“It is to be hoped that legal measures for the conservation of the subterranean fauna of Brazil – which constitutes one of the country’s unique biological resources – will be developed and consequently reinforced,” conclude the authors.

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Original source:

Hoch H, Ferreira RL (2016) Iuiuia caeca gen. n., sp. n., a new troglobitic planthopper in the family Kinnaridae (Hemiptera, Fulgoromorpha) from Brazil. Deutsche Entomologische Zeitschrift63(2): 171-181. doi: 10.3897/dez.63.8432

Machine Learning techniques and the future of Ecology and Earth Science Research

Increasingly becoming a necessity in Ecology and Earth Science research, handling complex data can be a tough nut when traditional statistical methods are applied. As one of its first publications, the new technologically-advanced Open Access journal One Ecosystem features a review paper describing the benefits of using machine learning technologies when working with highly-dimensional and non-linear data.

Natural sciences, such as Ecology and Earth science, focus on the complex interactions between biotic and abiotic systems in order to infer understand these systems and make predictions. Traditional statistical methods can impose unrealistic assumptions that result in unsound conclusions as the era of ‘big data’ meets ecology and earth science. Machine-learning-based methods, capable of inferring missing data and handling complex interactions, are more apt for handling complex scientific data.

“A wider adoption of machine-learning methods in ecology and earth science has the potential to greatly accelerate the pace and quality of science,” explains the author of the study, Dr. Anne Thessen, the Ronin Institute for Independent Scholarship. “Despite these advantages, however, machine-learning techniques have not met their full potential in ecology and earth science”.

The present gap between the potential and actual use of machine-learning methods is mainly due to to the lack of communication and collaboration between the machine-learning research community and natural scientists; the current deficiency in graduate education in machine learning methods; and the requirement for a robust training and test data set.

However, according to the newly published review paper, these impediments can be overcome through financial support for collaborative work and education.

“For many researchers, machine learning is a relatively new paradigm that has only recently become accessible with the development of modern computing. In this paper I suggest several mechanisms through which this useful method can be quickly introduced within the ecological and earth science fields, to ensure their wider application.” adds Dr. Thessen.

“We are extremely happy to pioneer One Ecosystem publications with this particular article. Created as an innovator in the fields of Ecology and Sustainability Sciences, one of the journal’s main objectives is to answer the need for Open Access not only to the final research content, but also to all underpinning data. Tackling issues of the ‘big data’ era, this article provides a perfect match for being among the first publications in a journal that aims at innovation,” comments Benjamin Burkhard, Editor-in-Chief of One Ecosystem.

Original Source:

Thessen A (2016) Adoption of Machine Learning Techniques in Ecology and Earth Science. One Ecosystem 1: e8621. doi:10.3897/oneeco.1.e8621

Additional information:

The author would like to acknowledge NASA for financial support and the Boston Machine Learning Meetup Group for inspiration.

Celebration time: ZooKeys releases its 600th issue

With what already sounds like an annual tradition at this time of the year, we are delighted to announce yet another milestone that ZooKeys just reached. Our 600th issue is now out and we are just as proud with it as we were exactly five years and a month ago, when we printed out our first three-digit issue number on a ZooKeys cover.

However, we feel nowhere near getting tired of counting pages, covers and issues, nor do we believe this will ever going to happen. Quite the contrary, every year we take more and more pleasure in adding new achievements next to the name of ZooKeys and Pensoft.

Last year was no exception. During the past 13 months, we published a total of 673 articles, including research findings spectacular enough to reach out to not only the zoological fellowship, but to the wide audience from around the world. While our Impact Factor keeps on increasing, according to the figures Thomson Reuters released last week, we are gratified to observe our progressively growing impact on both the scholarly and the popular-science front.

Thanks to the discoveries, which found a suiting publication partner in ZooKeys, our authors and us made a lot of big headlines in outlets such as National Geographic, Science, CNN, BBC, Sky News, New York Times, Deutsche Welle, Der Standard, DR, Washington Post, Fox News, Huffington Post, The Guardian, NBC News, and a lot more. We had a bit of everything: record-breakers, species given mystic or splashy names and others bearing nerdy ones. Together, we also gave public voice to serious conservation issues, calling for immediate action.

Last June, we introduced you to the Hades centipede, known to be the world’s deepest-dwelling species of its kind. Who knew that the entrance to the Underworld is located in a Croatian cave?

Later on, in November, published with us snail species Acmella nana broke the World record for the tiniest land snail. Moreover, this happened only about a month after we published the previous ‘prizewinner’ Angustopila dominikae, and that one was already tiny enough to fit 10 of its shells within the eye of a needle at the very same time!

Our pages, which have been and always will be openly available to read for anyone who is online, were also the first to let you know about the existence of the Johnny Cash tarantula, the (Edward) Snowden crayfish, the two daddy longlegs: Smeagol and the ‘Master-of-the-crypt’ Behemoth, the Chewbacca beetle and the Brad Pitt wasp, among many others.

About two months ago, graduate student Madhu Chetri spotted the ancient Himalayan woolly wolf in Nepal. The new knowledge about the beautiful and, sadly, Critically Endangered carnivore, which he acquired, will hopefully help in preventing its otherwise imminent extinction.

In the meantime, Deutsche Welle (DW) featured our Zorro fish along with the eight-legged Johnny Cash’s namesake in their rank list of the 7 “newcomer” species of the year.

While being in the spotlight is definitely a gratifying feeling, we also indulge in our successes achieved far from the eyes of the public, although we are certain that our authors will be just as excited to hear about. Such an accomplishment is our recently sealed partnership with open digital repository Zenodo, who are helping us, along with the rest of the journals, published by Pensoft, to keep our research findings safe and easily accessible by archiving all our articles in both PDF and XML format on the date of publication.

However, let’s not forget that nothing of all the above would be what it is without our authors, editors and reviewers, who have always done their best to keep ZooKeys at the World’s top open access academic journals. We’d especially like to thank our Most active authors, editors and reviewers for being substantial part of ZooKeys.

Botanical diversity unraveled in a previously understudied forest in Angola

Famous for hosting most endemic bird species in Angola, it comes as no surprise that the Kumbira forest in Angola has recently also revealed great botanical diversity. Remaining understudied for a long time, a recent botanical survey in the region revealed impressive numbers of vascular plants including new records for the country and potential new species. The full account of the Kumbira forest diversity is published in the open access journal Phytokeys.

In June 2014, two dedicated botanists has finally headed to the central escarpment of western Angola, to explore and describe flora of the Kumbira forest. Under the framework of bilateral cooperation between Angola and the Republic of South Africa, in collaboration with Kew Herbarium in UK, Dr. David Goyder, Herbarium, Royal Botanic Gardens, Kew and Mr. Francisco M. P. Gonçalves, Herbarium of Lubango, ISCED-Huíla, Lubango, conducted a first of its kind botanical survey in the region.

The importance of Kumbira forest has been referred in various sources for hosting the major number of Angolan endemic bird species. Despite its suspected ecological importance, however, the plant diversity knowledge of Kumbira has been unknown so far.

Nowadays, the important Kumbira forest biome is threatened by human activities such as illegal logging, forest slash-and-burn agriculture, poaching, and the increasing distribution area of the invasive alien tree species “pan chock” Inga vera subsp. vera.

“To fill in the knowledge gap and call attention to the importance of Kumbira forest not only as a zoological, but also as a botanical hotspot, we undertook a botanical survey into Kumbira forest.” explains Dr. Francisco M. P. Gonçalves.

During the brief survey period between 10th-18th June 2014, the researchers were amazed to collect over 100 botanical specimens in flower or fruit. Three species collected represent news records for Angola and Guineo-Congolian biome and one is a potential new species.

“More work is planned in the future with the vision to contribute to the creation of a Gabela Natural Reserve, which Kumbira is a part of. Although the plans for this conservation are already proposed, they are not yet implemented and we hope more knowledge of the organism richness of the region will contribute to its realization,” concludes Dr. Gonçalves.

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Original source:

Gonçalves FMP, Goyder DJ (2016) A brief botanical survey into Kumbira forest, an isolated patch of Guineo-Congolian biome. PhytoKeys 65: 1-14.doi: 10.3897/phytokeys.65.8679

A new framework for inferring community assembly processes in ecology

One of the most fundamental goals in ecology – determining the community assembly processes that have structured local communities – has been increasingly studied through the analysis of functional and phylogenetic diversity. Addressing growing evidence that inferences from these measures are often ambiguous to interpret, a new study published in the open access journal One Ecosystem, presents a conceptual framework integrating three approaches which reduces the likelihood of drawing incorrect conclusions.

A long-standing goal in ecology has been to document patterns in natural community structure and connect these patterns to underlying processes such as environmental filtering, disturbance, competition, and predation, collectively known as community assembly processes.

When studying these complex interactions, ecologists have been increasingly leaning towards inferring community assembly processes by calculating communities’ functional and phylogenetic diversity. Unlike diversity measures based solely on species’ identities, functional and phylogenetic diversity can describe important differences between species, ranging across ways in which they use resources, respond to, and influence the local environment.

“Functional and phylogenetic diversity can indeed be useful when trying to infer whether a particular community assembly process, such as interspecific competition or environmental filtering, has been most important for structuring a community or set of communities,” explain the authors of the study.

“However, it is also becoming increasingly obvious that care must be taken when using those methods, since inappropriate choice of traits, diversity metrics, or null models can produce ambiguous results and even lead to incorrect conclusions about the processes underlying community assembly.”

To answer this knowledge gaps, a team of ecologists present a conceptual framework which integrates three approaches to reduce the likelihood of drawing incorrect conclusions from analyses of functional and phylogenetic diversity:

testing hypotheses for how diversity measures and ecological processes vary along an environmental gradient;
analysis of both functional and phylogenetic diversity in concert; and
careful selection of traits related to processes of interest for inclusion in functional diversity analyses.

The new study describes the utility of each of these approaches and shows how combining them can strengthen one’s ability to correctly infer community assembly. The framework is presented in the context of identifying the signatures of interspecific competition and environmental filtering, important processes that operate in many systems across different taxa and are most often referred to in the functional and phylogenetic literature.

“In our paper, we provide examples showing how our framework can be used to test general hypotheses such as the Stress-Dominance Hypothesis,” comment the authors. “Our approach can also be applied to other processes besides competition and environmental filtering. This framework has the potential to enhance comparability between studies and allow for testing of alternative hypotheses regarding changes in community assembly processes along gradients.”

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Original Source:

Lopez B, Burgio K, Carlucci M, Palmquist K, Parada A, Weinberger V, Hulbert A (2016) A new framework for inferring community assembly processes using phylogenetic information, relevant traits and environmental gradients. One Ecosystem 1: e9501. doi: 10.3897/oneeco.1.e9501

End of an era: New sixth volume Research on Chrysomelidae the last with its original editors

The new and sixth volume of Research on Chrysomelidae consists of five research articles devoted to the latest findings about the amazing family of over 37,000 leaf beetle species from more than 2,500 genera. Among the studies, conducted by authors from all around the world, there is a new species of potentially dangerous legume-feeding pest, as well as new information regarding the life cycle,ecological interactions, species richness factors and taxonomy of some leaf beetles.

The latest volume devoted to one of the most intriguing beetle families also marks a turning point for the entomologists sharing special fondness for the leaf beetles. While the “spiritus rector” of the Chrysomelidae research community, Prof Pierre Jolivet resigned from his position last year, now Dr Jorge Santiago-Blay is also stepping down from the editorial board.

The third of the original trio, Prof Michael Schmitt, Ernst-Moritz-Arndt-Universität, takes the opportunity to look back to the beginning of the community and pay tribute to his long-year colleagues in his Editorial. He also confirms that the series, by now traditionally published in the open access journal ZooKeys, is far from over.

“I thank Jorge Santiago-Blay from the bottom of my heart for his tireless engagement in fostering leaf beetle research and his friendship, and wish him All the Best for whatever he may entertain in the future,” read his words.

In his short publication accompanying the five-piece issue, Prof Michael Schmitt recalls the very beginning of his team’s existence, started in 2001. He does not omit to note the numerous obstacles surrounding the first issues. At a point, having completed the enormous book “The green book – New Developments in the Biology of the Chrysomelidae”, comprising 62 chapters by 111 authors, as well as the first two volumes of Research on Chrysomelidae, they were made to drop the series due to unsatisfying selling numbers.

However, everything changed after the conversation Prof Pierre Jolivet and Prof Lyubomir Penev, Pensoft Publishers, had at the 9th European Congress of Entomology, held in Hungary in 2010. There they agreed to publish the next Research on Chrysomelidae volume as a special issue in ZooKeys, one of Pensoft’s journals.

Shortly after, the collaboration turned out so successful that it is now resulting in a fourth consecutive special issue. In the meantime, last December, the 30th anniversary of Symposia on Chysomelidae was celebrated in another leaf beetle-themed ZooKeys issue. Moreover, the next issue is already planned. It will cover the proceedings of the 9th International Symposium on Chrysomelidae and will be edited by Prof Michael Schmitt and Dr Caroline Chaboo, University of Nebraska State Museum, USA.

“The present volume is the fourth, but certainly not the last, published by Pensoft. Although the pullout of Pierre Jolivet and Jorge Santiago-Blay marks a crucial cut in the history of Research on Chrysomelidae, I understand the reasons of their decision to step down,” concludes Prof Michael Schmitt. “I hope and wish that the series will prosper and remain accepted as a forum of leaf beetle research by the community of Chrysomelidae enthusiasts all over the world.”

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Research on Chrysomelidae 6 Special Issue is available to read and order from here.

Original source:

Schmitt M (2016) Editorial. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 6. ZooKeys 597: 1-2. doi: 10.3897/zookeys.597.8618

Remarkably diverse flora in Utah, USA, trains scientists for future missions on Mars

Future Martian explorers might not need to leave the Earth to prepare themselves for life on the Red Planet. The Mars Society have built an analogue research site in Utah, USA, which simulates the conditions on our neighbouring planet.

Practicing the methods needed to collect biological samples while wearing spacesuits, a team of Canadian scientists have studied the diverse local flora. Along with the lessons that one day will serve the first to conquer Mars, the researchers present an annotated checklist of the fungi, algae, cyanobacteria, lichens, and vascular plants from the station in their publication in the open-access journal Biodiversity Data Journal.

Located in the desert approximately 9 km outside of Hanksville, Utah, and about 10 km away from the Burpee Dinosaur Quarry, a recently described bone bed from the Jurassic Morrison Formation, the Mars Desert Research Station (MDRS) was constructed in 2002. Since then, it has been continuously visited by a wide range of researchers, including astrobiologists, soil scientists, journalists, engineers, and geologists.

Astrobiology, the study of the evolution and distribution of life throughout the universe, including the Earth, is a field increasingly represented at the MDRS. There, astrobiologists can take advantage of the extreme environment surrounding the station and seek life as if they were on Mars. To simulate the extraterrestrial conditions, the crew members even wear specially designed spacesuits so that they can practice standard field work activities with restricted vision and movement.

In their present research, the authors have identified and recorded 38 vascular plant species from 14 families, 13 lichen species from seven families, 6 algae taxa including both chlorophytes and cyanobacteria, and one fungal genus from the station and surrounding area. Living in such extreme environments, organisms such as fungi, lichens, algae, and cyanobacteria are of particular interest to astrobiologists as model systems in the search for life on Mars.

However, the authors note that there is still field work to be executed at the site, especially during the spring and the summer so that the complete local diversity of the area can be captured.

“While our present checklist is not an exhaustive inventory of the MDRS site,” they explain, “it can serve as a first-line reference for identifying vascular plants and lichens at the MDRS, and serves as a starting point for future floristic and ecological work at the station.”

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Original source:

Sokoloff P, Hamilton P, Saarela J (2016) The “Martian” flora: new collections of vascular plants, lichens, fungi, algae, and cyanobacteria from the Mars Desert Research Station, Utah.Biodiversity Data Journal 4: e8176. doi: 10.3897/BDJ.4.e8176