A team of experts has created the first database of field studies on the impacts of invasive plants on native species, communities and ecosystems in Europe.
The dataset comprises 266 peer-reviewed publications reporting 4,259 field studies on 104 invasive species across 29 European countries. It is the first harmonised database of its kind at continental scale, and is freely accessible to the scientific community for future studies. Notably, one third of the studies focused on just five species that invade several central European countries.
Japanese knotweed (Reynoutria japonica) in a garden in Brastad, Lysekil Municipality, Sweden.
The comprehensive database indicates that invasive plants impact other plants, animals and microbes, all trophic levels (herbivores, parasites, plants, pollinators, predators, omnivores, decomposers and symbionts) and numerous ecosystem processes.
Map of locations (red dots) of field studies on the ecological impacts of invasive plant species in Europe. Credit: Vilà et al.
More than half of the studies were conducted in temperate and boreal forests and woodlands and temperate grasslands. Major knowledge gaps are found in Baltic and Balkan countries, in desert and semi-arid shrublands, subtropical forests and high mountains.
Prof. Montserrat Vilà, coordinator of this task, highlights that the database provides information on whether the invasive species increase, decrease or have a neutral effect on the ecological variable of study. This allows investigation into the circumstances in which the invader has contrasting effects.
Himalayan balsam (Impatiens glandulifera). Credit: Guptaele via Wikimedia Commons, CC BY-SA 4.0.
The database will be updated as new field studies on the ecological impacts of invasive species are published. “We hope for more studies on species that are still locally rare and with restricted distribution,” Prof. Montserrat Vilà says, “this database is of interest for academic, management and policy-related purposes.”
Vilà M, Trillo A, Castro-Díez P, Gallardo B, Bacher S (2024) Field studies of the ecological impacts of invasive plants in Europe. NeoBiota 90: 139-159. https://doi.org/10.3897/neobiota.90.112368
There has been an increasing need to support the exchange of research related to the conservation and sustainable management of estuarine ecosystems by means of new-age technologies and approaches.
Where freshwater rivers meet seas and oceans lies a scientifically intriguing and ecologically important type of ecosystem. As estuarine ecosystems provide various and diverse services to humanity and the planet at large, including food security and natural buffers and filters in the events of storms and water pollution, there has been an increasing need to facilitate and support the exchange of research findings and ideas related to their conservation and sustainable management by means of new-age technology and novel approaches.
This is how a team of renowned and passionate scientists, headed by Dr. Soufiane Haddout (Ibn Tofail University, Morocco), took the decision to launch a brand new open-access, peer-reviewed scholarly, aptly titled Estuarine Management and Technologies. They explain the rationale behind the journal in a new editorial, published to mark the official launch of the journal.
Having already worked closely with the scientific publisher and technology provider Pensoft on the fine touches of the concept of the new academic title, the team opted to use Pensoft’s publishing platform of ARPHA. As a result, the new journal provides a seamless, end-to-end publishing experience, encompassing all stages between manuscript submission and article publication, indexation, dissemination and permanent archiving.
Within the collaboration between the journal’s and Pensoft’s teams, Estuarine Management and Technologies will take advantage of various services offered by the ARPHA platform, including full-text automated export in machine-readable and minable JATS-XML format to over 60 relevant databases for scientific literature and data; semantically enriched and multimedia-friendly publications accessible in HTML; and rich statistics about the outreach and usage of each published article and its elements (e.g. figures and tables), including views, downloads, online mentions, and citations.
The publishing platform’s in-house indexing team will continue their close work with the journal’s editors to ensure that the scholarly outlet retains highest quality and integrity, so that it covers the criteria for indexation at additional key databases that require individual evaluation. In the meantime, ARPHA’s technical and editorial teams will provide technical and customer support to authors, editors and reviewers. The marketing and promotion team of ARPHA will be also joining forces with the journal to boost the visibility and image of the new academic title.
During the launch phase, content accepted for publication following double-blinded peer review will be made public right away for free to both authors and readers, where the journal will be operating under a continuous publication model.
Estuarine Management and Technologies welcomes studies from a wide spectrum of disciplines, including physics, chemistry, geology, biology, and hydrology, with a focus on interdisciplinarity, multifaceted approaches and holistic perspectives.
“One crucial aspect of estuarine management is the sustainable use of resources to balance conservation with human needs. Striking this delicate equilibrium requires a holistic understanding of the intricate web of ecological interactions within estuarine environments. Advanced technologies, such as isotopic techniques, environmental DNA (eDNA) analysis, can provide insights into the biodiversity of estuarine ecosystems with unprecedented precision,”
explain Dr Haddout and his colleagues in the opening editorial.
Amongst the unique features of the new journal are several additional publication types, such as Expert View, Video Paper, Rapid Communication, Mini Review and Estuarine Scientists, where these have been added to traditional publication outputs (e.g. Research Paper, Review Paper, Data Paper) to foster collaboration between researchers and other stakeholders in the field.
The journal is also running an annual Trailblazing Talent in Estuarine Management and Technologies award intended to recognise and encourage young scientists and engineers at the forefront of cutting-edge research in estuarine management and technologies. Nominations and applications are currently open.
Estuarine Management and Technologies also welcomes applications for guest editors in order to further expand the journal and its immediate expert network.
“I am delighted to see the Estuarine Management and Technologies journal already live on the ARPHA platform. We are confident that this particularly important, yet so far quite overlooked area of study will greatly benefit from this highly promising journal,”
says Prof. Lyubomir Penev, CEO and founder of Pensoft and ARPHA.
“I am pleased to announce the launch of the Estuarine Management and Technologies journal on ARPHA, a decision rooted in our commitment to advancing the field. We believe that this strategic partnership will not only enhance the visibility and accessibility of our journal, but will also foster collaboration and innovation within the estuarine management and technologies community. We expect this alliance to be a catalyst for scholarly excellence, providing a robust platform for researchers and practitioners to share insights, address challenges, and propel the field forward. Together with ARPHA, we are confident in the positive impact our journal will have on shaping the future of estuarine management and technologies.”
says Dr. Soufiane Haddout, Editor-in-Chief and founder, Estuarine Management and Technologies.
***
You can visit the journal website and sign up for its newsletter from the homepage.
You can also follow Estuarine Management and Technologies onX (formerly Twitter).
Researchers of Khamai Foundation and Liberty University have discovered a new species of coffee snake endemic to the cloud forests of northwestern Ecuador.
The new species is named Ninia guytudori, in honor of naturalist Guy Tudor, in recognition of the impact he has had on the conservation of South America’s birds through his artistry. Photo by Alejandro Arteaga.
Biologist Alejandro Arteaga first found the snake in Ecuador’s Pichincha province, while looking for animals to include in a book on the Reptiles of Ecuador.
“This is species number 30 that I have discovered, out of a target of 100,” he says.
Ninia guytudori from Santa Lucía Cloud Forest Reserve, Pichincha province. Photo by Jose Vieira
Like other coffee snakes, Tudors’s Coffee-Snake often inhabits coffee plantations, especially in areas where its cloud forest habitat has been destroyed. It is endemic to the Pacific slopes of the Andes in northwestern Ecuador, where it lives at elevations of between 1,000 and 1,500 m above sea level.
While it faces no major immediate extinction threats, some of its populations are likely to be declining due to deforestation by logging and large-scale mining.
The researchers hope that its discovery will highlight the importance of preserving the cloud forest ecosystem, and focus research attention on human-modified habitats that surround it such as coffee plantations and pastures.
Photographs of some specimens of Ninia guytudori: top, from Santa Lucía Cloud Forest Reserve, Pichincha province. Bottom, from Río Manduriacu Reserve, Imbabura province. Photos by Jose Vieira
The name of the new snake species honors Guy Tudor, “an all-around naturalist and scientific illustrator with a deep fondness for birds and all animals, in recognition of the impact he has had on the conservation of South America’s birds through his artistry,” the researchers write in their paper, which was recently published in Evolutionary Systematics.
“We are trying to raise funds for conservation through the naming of new species. This one helped us protect Buenaventura Reserve.
Research article:
Arteaga A, Harris KJ (2023) A new species of Ninia (Serpentes, Colubridae) from western Ecuador and revalidation of N. schmidti. Evolutionary Systematics 7(2): 317-334. https://doi.org/10.3897/evolsyst.7.112476
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Insects are among the most prolific and successful invaders of new habitats, but not all regions are equal in the numbers of insects that have spread beyond their borders.
Flows of non-native insects between N. America, Europe, and Australasia. Numbers are the total count of species established from donor to recipient.
European insects, in particular, stand out as highly successful invaders into other world regions. Why? Biologists have long understood that species are spread through international trade: insects are frequent stowaways in trade goods, and the value of international trade between world regions can be a good predictor of how many non-native species are exchanged.
However, recent research led by Dr. Rylee Isitt of the University of New Brunswick, and published in the journal NeoBiota, shows that after accounting for patterns of international trade, the number of insects that have spread from Europe into North America, Australia, and New Zealand far exceeds expectations.
Since patterns in international trade can’t explain these insect invasions, the researchers looked for other potential explanations. It’s possible that European insects are simply more numerous or better invaders than their North American or Australasian counterparts. However, Dr. Isitt and his collaborators didn’t find evidence for that – at most, there are only slightly more European species with the capacity to invade compared to North American and Australasian species.
Another possibility is North American and Australasian habitats are easier to invade than European ones. But prior research has shown that Europe has been heavily invaded by Asian insects, suggesting that it is no more resistant to invasion than North America or Australasia.
Instead, Dr. Isitt and collaborators have proposed that the abundance of European insect invaders may be a result of deliberate introductions of non-native plants into Europe’s colonies. Plants introduced into European colonies could have promoted the spread of European insects into North America and Australia by two different means.
First, insects may have been introduced along with the plants. Second, introduced plants may have provided suitable food and habitat for subsequent arrivals of non-native insects, who might have otherwise found the native flora to be unpalatable or unsuitable as a habitat.
Cumulative discoveries (observed and modelled) and establishments (modelled) of non-native insects exchanged between Europe (EU), North America (NA), and Australasia (AU) versus cumulative import value (inflation-corrected to 2020 British pounds sterling, billions), 1827–2014. Alternating background shading indicates decadal increments, with shading omitted prior to the 1940s for clarity.
Although the researchers haven’t completely resolved the mystery of the overabundance of European insects, they have ruled out several possibilities, leaving the connection to introduced plants as the prime suspect. The next steps? Determining to what extent European insects spread through introduced plants compared to insects from other world regions.
Because invasive species are reshaping our world, we need to understand how they move and establish. Evidence is mounting that trade in plants and plant products is responsible for a large proportion of insect invasions. If the researchers’ hypothesis is correct, the spread of European insects may be a remarkable example of the unintended consequences of deliberate plant introductions.
Research article:
Isitt R, Liebhold AM, Turner RM, Battisti A, Bertelsmeier C, Blake R, Brockerhoff EG, Heard SB, Krokene P, Økland B, Nahrung HF, Rassati D, Roques A, Yamanaka T, Pureswaran DS (2024) Asymmetrical insect invasions between three world regions. NeoBiota 90: 35-51. https://doi.org/10.3897/neobiota.90.110942
The intricate world beneath our feet holds secrets that are only now being unveiled, as researchers embark on a groundbreaking project to explore the hidden diversity of forest leaf litter beetles in Taiwan.
Forest leaf litter, often likened to terrestrial coral reefs, supports an astonishing variety of life. Among the myriad arthropods dwelling in this ecosystem, beetles emerge as the most common and speciose group. Despite their abundance, our understanding of leaf litter beetles remains limited due to the challenges posed by their sheer numbers, small sizes, and high local endemism.
Unlocking the Mystery with DNA Barcoding
To overcome these challenges, a team of researchers has initiated the Taiwanese Leaf Litter Beetles Barcoding project. Leveraging DNA barcoding, the project aims to create a comprehensive reference library for these elusive beetles. DNA barcoding, a technique using short mitochondrial fragments, accelerates the analysis of entire faunas and aids in the identification of species. The goal is to provide a valuable resource for researchers, ecologists, conservation biologists, and the public.
DNA voucher collection. Hu et al.
A Collaborative Journey with Taxonomists
The success of the Taiwanese Leaf Litter Beetles Barcoding project hinges on the invaluable contribution of taxonomists, who play a pivotal role in this groundbreaking research. Recognizing the specialized knowledge required for precise genus and species identifications, the researchers diligently consulted with specialists for each family represented in the extensive dataset.
In cases where these taxonomic experts provided crucial assistance, they were not merely acknowledged but offered co-authorship, acknowledging the significant commitment and expertise they bring to the project. Many taxonomists devote their entire lives to the meticulous study of specific beetle groups, and this collaboration underscores the importance of their dedication. The researchers emphasize the fairness of extending co-authorship to these taxonomic experts, acknowledging their indispensable role in advancing our understanding of Taiwan’s leaf litter beetle fauna.
Larva of Oodes (Lachnocrepis) japonicus. Hu et al.
Rich Beetle Diversity in Taiwan
Taiwan, nestled in the western Pacific, boasts a rich biodiversity resulting from its location at the crossroads of the Oriental and Palearctic biogeographical regions. Beetles, with over 7,700 recorded species belonging to 119 families, stand out as a particularly diverse insect order on the island. Despite this wealth of species, taxonomic research on beetles in Taiwan has been fragmented, and the study of leaf litter beetles has relied heavily on collections from past decades.
Larvae of Lagriascutellaris (OTU174) associated with adults by DNA. Hu et al.
The current dataset, based on specimens collected in the Huisun Recreation Forest Area in 2019–2021, comprises 4,629 beetles representing 334 species candidates from 36 families. The DNA barcoding approach has not only allowed for efficient species identification but has also provided a glimpse into the intricate world of beetle larvae, enhancing our understanding of their biology and ecological roles. This comprehensive dataset marks a significant step forward in unraveling the mysteries of Taiwan’s diverse beetle fauna.
Project Goals, Progress, and Future Outlook
The Taiwanese Leaf Litter Beetles Barcoding project is dedicated to a three-fold mission: conducting an extensive study of leaf litter beetles, documenting their diversity in Taiwan, and providing a reliable tool for quick identification. The researchers have published the first set of DNA barcodes, unveiling taxonomic insights such as the description of a new species and several newly recorded taxa.
Map of the samples collected in 2019–2023. Hu et al.
While the dataset is geographically limited to a single forest reserve in central Taiwan, it efficiently demonstrates the challenges of studying subtropical and tropical leaf litter beetle faunas. The integration of DNA barcoding and morphology proves instrumental in unraveling the mysteries of this species-diverse ecosystem. Looking ahead, the team plans to expand their sampling across Taiwan, covering diverse regions, altitudinal zones, and forest types.
Continuous updates to the DNA barcode dataset will serve as a valuable resource for future studies, maintaining a balanced approach that recognizes DNA barcoding as an efficient complement to traditional taxonomic methods.
Research article:
Hu F-S, Arriaga-Varela E, Biffi G, Bocák L, Bulirsch P, Damaška AF, Frisch J, Hájek J, Hlaváč P, Ho B-H, Ho Y-H, Hsiao Y, Jelínek J, Klimaszewski J, Kundrata R, Löbl I, Makranczy G, Matsumoto K, Phang G-J, Ruzzier E, Schülke M, Švec Z, Telnov D, Tseng W-Z, Yeh L-W, Le M-H, Fikáček M (2024) Forest leaf litter beetles of Taiwan: first DNA barcodes and first insight into the fauna. Deutsche Entomologische Zeitschrift 71(1): 17-47. https://doi.org/10.3897/dez.71.112278
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A new agamid joins Asia’s rich reptile fauna, officially described as new to science in the open-access journal ZooKeys.
Calotes wangi.
“From 2009 to 2022, we conducted a series of field surveys in South China and collected a number of specimens of the Calotes versicolor species complex, and found that the population of what we thought was Calotes versicolor in South China and Northern Vietnam was a new undescribed species and two subspecies,” says Yong Huang, whose team described the new species.
Calotes wangi hainanensis, a newly discovered subspecies of Calotes wangi.
Wang’s garden lizard (Calotes wangi) is less than 9 cm long, and one of its distinguishing features is its orange tongue.
“Calotes wangi is found in subtropical evergreen broad-leaved forests and tropical monsoon forests in southern China and northern Vietnam, mostly in mountainous areas, hills and plains on forest edges, arable land, shrub lands, and even urban green belts. It is active at the edge of the forest, and when it is in danger, it rushes into bushes or climbs tree trunks to hide. Investigations found that the lizards lie on sloping shrub branches at night, sleeping close to the branches,” says Yong Huang.
Calotes wangi.
It is active from April to October every year, while in the tropics it is active from March to November or even longer, and eats a variety of insects, spiders, and other arthropods.
For now, the researchers estimate that the new species is not threatened, but they do note that in some areas its habitat is fragmented.
Images of Calotes wangi’s habitat.
“In addition, their bodies are used medicinally and the lizards are also eaten,” they write in their research paper.
This is why they suggest that the local government strengthen the protection of their ecological environment and pay close attention to the population dynamics.
Research article:
Huang Y, Li H, Wang Y, Li M, Hou M, Cai B (2023) Taxonomic review of the Calotes versicolor complex (Agamidae, Sauria, Squamata) in China, with description of a new species and subspecies. ZooKeys 1187: 63-89. https://doi.org/10.3897/zookeys.1187.110704
Despite the success of 2023, the Pensoft team is keener than ever to improve in every aspect in the coming year. A massive thank you to every author, editor, reviewer and reader of Pensoft’s journals, and a very happy New Year!
In a collaborative study involving institutions from Singapore, Malaysia, Germany, and the UK, scientists have discovered a new species of pit viper from Myanmar that is both similar and different from its adjacent sister species.
Finding and describing new species can be a tricky endeavor. Scientists typically look for distinctive characters that can differentiate one species from another. However, variation is a continuum that is not always easy to quantify. At one extreme, multiple species can look alike even though they are different species—these are known as cryptic species. At the other extreme, a single species can be highly variable, creating an illusion of being different species. But what happens when you encounter both extremes simultaneously?
A specimen of Trimeresurus ayeyarwadyensis from the Yangon Region, Myanmar. Photo by Wolfgang Wüster
“Asian pit vipers of the genus Trimeresurus are notoriously difficult to tell apart, because they run the gamut of morphological variation. Some groups contain multiple species that look alike, while others may look very different but are actually the same species,” they say.
A specimen of Trimeresurus ayeyarwadyensis from the Yangon Region, Myanmar. Photo by Wolfgang Wüster
The redtail pit viper (Trimeresuruserythrurus) occurs along the northern coast of Myanmar and is invariably green with no markings on its body. A different species called the mangrove pit viper (Trimeresuruspurpureomaculatus) occurs in southern Myanmar. This species typically has distinct dorsal blotches, and incredibly variable dorsal coloration including gray, yellow, brown, and black, but never green. Interestingly, in central Myanmar, sandwiched between the distribution of the redtail pit viper and the mangrove pit viper, a unique population exists that is green with varying degrees of blotchiness, which appears to be a blend between the redtail pit viper and the mangrove pit viper.
“This mysterious population in central Myanmar baffled us and we initially thought that it could be a hybrid population,” the researchers said. In a separate paper, Dr Chan used modern genomic techniques and determined that the population in central Myanmar was actually a distinct species and not a hybrid population.
But this was not the end of the story. The researchers discovered another surprise when they examined the snake’s morphological features: they found that the new species was also highly variable. Certain populations are dark green with distinct blotches, easily distinguishable from its closest relative, the redtail pit viper, which is bright green with no blotches. However, some populations of the new species are bright green with no blotches and look virtually identical to the redtail pit viper.
A specimen of Trimeresurus ayeyarwadyensis from Meinmahla Kyun Wildlife Sanctuary, Pyapon District, Ayeyarwady Region in Myanmar. Credit Hla tunA specimen of Trimeresurus ayeyarwadyensis from Mwe Hauk Village, Ayeyarwady Region in Myanmar. Credit Dong Lin
“This is an interesting phenomenon, where one species is simultaneously similar and different from its closest relative (the redtail pit viper). We think that at some point in the past, the new species may have exchanged genes with the redtail pit viper from the north and the mangrove pit viper from the south,” says Dr Chan.
The new species is called the Ayeyarwady pit viper (Trimeresurusayeyarwadyensis) in reference to the Ayeyarwady River, which is the largest and one of the most important rivers in Myanmar. The river forms an expansive delta that is bounded by the Pathein River to the west and the Yangon River to the east. These rivers and their associated basins also mark the westernmost and easternmost distribution boundaries of the Ayeyarwady pit viper.
Research article:
Chan KO, Anuar S, Sankar A, Law IT, Law IS, Shivaram R, Christian C, Mulcahy DG, Malhotra A (2023) A new species of pit-viper from the Ayeyarwady and Yangon regions in Myanmar (Viperidae, Trimeresurus). ZooKeys 1186: 221-234. https://doi.org/10.3897/zookeys.1186.110422
In the depths of Ecuador’s wilderness, scientists have unveiled the presence of two new tarantula species from the slopes of the Andes in the western part of the country.
In the depths of Ecuador’s wilderness, scientists have unveiled the presence of two new tarantula species. Researchers of Universidad San Francisco de Quito found them on trees on the slopes of the Andes in the western part of the country.
Meet Ecuador’s newest tarantulas
One of them was found in late February 2023, 1.5 m above the forest floor in the foothill evergreen forest of the Cordillera Occidental . Just discovered, it is already seriously threatened as people use its habitat for mining and agriculture. Its scientific name reflects this vulnerability: the tarantula is called Psalmopoeus chronoarachne, from the Greek words for “time” and “spider.”
Psalmopoeus chronoarachne.
“The compound word refers to the adage that these spiders could ‘have their time counted’ or reduced by impactful anthropogenic activities. The name addresses conservation concerns about the survival and prevalence of spider species in natural environments,” they write in their paper, which was just published in the open-access journal ZooKeys.
The other newly discovered tarantula has an even more curious name: Psalmopoeus satanas. “It is appropriately named because the initial individual that was collected had an attitude!” says researcher Roberto J. León-E, who first spotted it in a bamboo fence in San José de Alluriquín. The spider immediately exhibited defensive behavior; “this behavior then transformed into fleeing, where the spider made quick sporadic movements, nearly too fast to see.”
Psalmopoeus satanas.
It was the first tarantula he ever caught.
“The members of the Mygalomorphae Research Group in the Laboratory of Terrestrial Zoology at Universidad San Francisco de Quito grew very fond of this individual during its care, in spite of the individual’s bad temperament and sporadic attacks (reason for the nickname),” he writes in the paper.
The species, which can be found in in the north of the Cordillera Occidental of the Andes at about 900 m above sea level, is facing serious threats as its habitat is degraded, ever declining, and severely fragmented by cropland and mining concessions and expanding urban and agricultural territories.
Critically endangered: threats to tarantula survival
“It is important to consider that the areas in which these arthropods live are not under legal protection. The implementation of protected areas in these localities is essential to maintain the remaining population of these endangered species and to encourage research on the remaining undescribed or unknown tarantula species in the area,” says Pedro Peñaherrera-R, who led the research on these animals.
Mining concessions in Ecuador.Credit José Manuel Falcón-Reibán
This makes the region highly vulnerable to both legal and illegal mining operations that extract metals such as copper, silver, and gold, introducing pollutants to its ecosystems.
The implementation of stricter regulations and penalties for illegal mining or other extracting-related activities, including specimen smuggling, might help these species survive. Likewise, the engaging and educating of local communities about the importance of biodiversity conservation is essential to avoid further extinction.
“We encourage future work by Ecuadorian and international researchers, organisations, and governments to effectively understand the reality about the threat of tarantula smuggling and the required conservation status of each species in the country.” Says Roberto J. León-E.
Overview of the ecosystem of both species. Credit Naia Andrade Hoeneisen
“It is essential to consider the potential loss of both P. chronoarachne and P. satanas and the ecological consequences that would result from their extinctions. These species may serve essential roles in the stratified micro-ecosystems in their respective areas,” the researchers write in their paper.
The dark side: illegal trade in wild tarantulas
Illegal trade in wild tarantulas as pets is also a latent threat, not only to these two species, but to Ecuadorian tarantulas in general. Many tarantula species can be found for sale online on various websites and Facebook groups. “During the writing of this article and the publication of another article, we found that a species that we described (Neischnocolus cisnerosi) is currently in the illegal pet trade!” says Pedro Peñaherrera-R.
After studying papers on wild-caught pet-trade specimens, the researchers conclude that the issue has been going on for more than 30 years in the country. “Although this series of publications encouraged research on Ecuadorian tarantulas previously ignored for centuries, they also functioned as catalysts within the exotic pet-trade hobby, aiding in obtaining these species and further encouraging people to collect undescribed species,” says Pedro Peñaherrera-R with concern.
Original source:
Peñaherrera-R. P, León-E. RJ (2023) On Psalmopoeus Pocock, 1895 (Araneae, Theraphosidae) species and tarantula conservation in Ecuador. ZooKeys 1186: 185-205. https://doi.org/10.3897/zookeys.1186.108991
Pseudomonas aeruginosa is a bacterial strain that can be responsible for several human diseases: the most serious include malignant external otitis, endophthalmitis, endocarditis, meningitis, pneumonia, and septicemia.
The environments in which these bacteria are most frequently found include soil, plants, and water. They can even be found on human and animal skin, without causing illness, in a process known as bacterial colonisation. Microbiological research can help establish the cause of certain infectious diseases, making it easier to choose the best treatment. This is why it is important to find a quick and easy way to identify these bacteria. A new study, published in the open-access journal BioRisk, explored this by applying spectroscopic techniques for quick analysis directly from an object, which, in this case, was turtle skin.
Sampling of biological material from turtle skin before further microbiological analysis and Raman spectroscopy.Credit Inta Umbraško
“Microbial organisms play key roles in animal health and ecology. The European pond turtle often lives in city Zoo gardens and private houses. Often, the most commonly found bacteria from turtle skin surfaces was Pseudomonas species,” says Aleksandrs Petjukevics of Daugavpils University, whose team conducted the study.
What is Raman spectroscopy?
“Classical microbiological research techniques have several disadvantages: first of all, it is a rather lengthy process. The minimum period is 3-4 days, but many days and even weeks may pass before the isolated pathogen is accurately identified, and it uses expensive chemicals and resources,” says Aleksandrs Petjukevics. As an alternative, spectrometry makes it possible to identify a prepared sample of a microorganism while reducing the identification time to 5-30 minutes.
Raman spectra represent an ensemble of signals that arise from the molecular vibrations of individual cell components of gram-negative bacteria, integrating over proteins, lipids, and carbohydrates. “This non-destructive chemical analysis technique provides detailed information about chemical structure, phase and polymorphy, crystallinity, and molecular interactions. It is based on the interaction of light with the chemical bonds within a material,” he says.
Research results and implications
The study’s findings showed that Pseudomonas bacteriacan be quickly identified using this detection technology, with excellent analytical and diagnostic sensitivity, making it a dependable technique.
Unlike other methods, this technique does not require long-term bacterial sample preparation and expensive reagents, which makes it promising for studying other strains of bacteria.
“This study demonstrated the ability to obtain fast and high-quality Raman spectra of bacterial cells using vibrational spectroscopy,” says Aleksandrs Petjukevics. “Raman spectroscopy can be considered an express method for identifying microorganisms. It holds great potential for future research involving different microorganisms.”
Research article:
Petjukevičs A, Umbraško I, Škute N (2023) Prospects and possibilities of using Raman spectroscopy for the identification of Pseudomonas aeruginosa from turtle Emys orbicularis (Linnaeus, 1758) skin. BioRisk 21: 19-28. https://doi.org/10.3897/biorisk.21.111983
