Tag: biodiversity

How many sharks, chimaeras, skates, and rays inhabit Mexico?

Worldwide, Mexico is well-known for a lot of things: its cuisine, tequila, mariachis, pyramids, and beaches, as well as being the country with the most Spanish-speaking residents (more than 120 million people).

In contrast, however, little is known for the country’s chondrichthyan fauna: a class of fishes containing the sharks, chimaeras, rays, and skates.

To fill the gap in the knowledge of the Mexican marine fauna, scientists from the Instituto Politécnico Nacional – Centro Interdisciplinario de Ciencias Marinas (IPN-CICIMAR) conducted a multidisciplinary study on the extant species of the country’s Economic Exclusive Zone (EEZ) and, as a result, reported a total of 217 extant chondrichthyan species. Their findings are published in the open access journal ZooKeys.

In their updated taxonomic list, the team of Dr. José De La Cruz-Agüero, Dr. Jorge Guillermo Chollet-Villalpando, and Venezuelan graduate students Lorem González-González and Nicolás R. Ehemann report eight chimaeras, 111 sharks and 98 ray and skate species. These numbers equate to 18% of the world’s chondrichthyans.

Split between the Mexican coasts there are 92 species recorded from the Mexican Pacific and the Gulf of California, whereas 94 fishes are identified for the Gulf of Mexico and the Caribbean Sea. Additionally, 31 species are known from both coasts.

“The species richness will undoubtedly continue to increase, due to the current investigations in progress, as well as the exploration of deep-water fishing areas in the EEZ,” comment the scientists.

Considered to be primitive fishes, sharks, skates, chimaeras, and rays are believed to have been inhabiting the planet for the last 420-450 million years. To put it in perspective, the earliest evidence of our species – Homo sapiens – is pretty ‘young’ at 315,000 years.

Not only do these species are peculiar with their lack of a bony skeleton when compared to the more recently evolved fishes, but they also have an unusual digestive system, featuring a spiral valve, where the lower intestine is twisted like a corkscrew to increase the surface area. They don’t have a swimming bladder either. Further, there are about 650 extant species, whereas the known bony fishes are estimated to be over 35,000.

Most of the chondrichthyans are considered either ‘Critically Endangered’ (a classification a step below ‘Extinct’) or ‘Endangered’, according to the Red List of the International Union for Conservation of Nature (IUCN). The majority are also featured in the Convention on International Trade in Endangered Species.

As if to make matters worse, these fishes are also particularly susceptible to overfishing and have a low rate of growth and fecundity (females give birth to between 1 and 25 pups a year).

Original source:

Ehemann NR, González-González LV, Chollet-Villalpando JG, Cruz-Agüero JDL (2018) Updated checklist of the extant Chondrichthyes within the Exclusive Economic Zone of Mexico. ZooKeys 774: 17-39. https://doi.org/10.3897/zookeys.774.25028

New ‘scaly’ snails species group following striking discoveries from Malaysian Borneo

Six new species of unique land snails whose shells are covered with what look like scales have been described from the biodiversity hotspot of Malaysian Borneo by scientists Mohd Zacaery Khalik, Universiti Malaysia Sarawak, Kasper Hendriks, University of Groningen, Jaap Vermeulen, JK Art & Science, and Prof Menno Schilthuizen, Naturalis Biodiversity Center. Their paper is published in the open access journal ZooKeys.

Thanks to their conspicuous structures, the mollusks have been added to a brand new species group of land snails to be commonly known as the ‘scaly’ snails, so that they can be set apart from the rest in the genus Georissa. Why it is that only some of the species in the genus sport the unique ‘scales’, remains unknown.

Fascinated with the minute ‘scaly’ snail fauna of Borneo, the researchers carried out fieldwork between 2015 and 2017 to find out how these curious shells evolved. In addition, they also examined material deposited in museum and private snail collections.

Apart from DNA data, which is nowadays commonly used in species identification, the team turned to yet-to-become-popular modern tools such as 3D modelling, conducted through X-ray scanning. By doing so, the researchers managed to look at both the inner and outer surfaces of the shells of the tiny specimens from every angle and position, and examine them in great detail.

The researchers note that to identify the ‘scaly’ snails to species level, one needs a combination of both DNA and morphological data:

“Objective species delimitation based solely on molecular data will not be successful for the ‘scaly’ snails in Georissa, at least if one wishes for the taxonomy to reflect morphology as well.”

The six new species are all named after the localities they have been originally collected from, in order to create awareness for species and habitat conservation.

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Watch rotation and cross-section of the 3D models of the studied species here.

Original source:

Khalik MZ, Hendriks K, Vermeulen JJ, Schilthuizen M (2018) A molecular and conchological dissection of the “scaly” Georissa of Malaysian Borneo (Gastropoda, Neritimorpha, Hydrocenidae). ZooKeys 773: 1-55. https://doi.org/10.3897/zookeys.773.24878

Described 28 years post-collection, new grass species makes a strong case for conservation

Originally collected 28 years ago in Ecuador, new species Poa laegaardiana has been just described, only to find out its prospects for surviving in its type location seem bleak nowadays. The study was published in the open access journal PhytoKeys.

When roaming in the Cordillera de los Andes of Ecuador, near the village of Facundo Vela, little did Smithsonian scientist and author, Dr. Paul M. Peterson, know that a small grass specimen will not only turn out to be an intriguing new species, but will also make a big statement on the importance of conservation.

Scientific drawing showing what makes new species P. laegaardiana distinct from its congeners

Almost three decades after its original collection the new species P. laegaardiana has finally emerged from its herbarium collection, but the story took an unexpected twist.

It took the authors a single Google Earth search to find out that what used to be the natural habitat of the newly found densely tufted bunchgrass, is now occupied predominantly by small farms.

Heavy agricultural use of the terrain, poses a good possibility for P. laegaardiana to have already been extirpated from this location. With the species currently known only from this area, chances are that this newly described species, might in fact turn out to be already extinct.

“Further studies are needed to search the area and browse collections for specimens from different locations,” explains Dr. Peterson. “But, in fact, it may well be that with our study we are documenting a possible extinction of a species, happening in the space of just 30 years. The story of P. laegaardiana serves to show how human-induced habitat loss can indeed be a major threat to the survival of life on Earth.”

The new species was named after renowned Danish botanist Simon Laegaard, who has made extensive collections in South America, Greenland, Ecuador, and Bolivia (accompanied by the authors) contributing to the documentation of the flora to make informed conservation and management plans.

Google Earth image comparison between the area of collection in 2011 and today. With the area having been plowed, chances of the grass still existing there are small, however it may still be found along the margins of the fields. CREDIT Left: @2018DigitalGlobe; Right: @2018Google @2018CNES/Airbus

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Original Source:

Peterson PM, Soreng RJ (2018) Poa laegaardiana, a new species from Ecuador (Poaceae, Pooideae, Poeae, Poinae). PhytoKeys 100: 141-147. https://doi.org/10.3897/phytokeys.100.25387

Out of the darkness: A new spider found deep within an Indiana cave

Lead author Marc Milne in the Stygian River Cave and a male specimen of the newly described *Islandiana lewisi*

Spiders are ubiquitous within our forests, fields, and backyards. Although you may be used to seeing the beautiful yellow and black spiders of the genus Argiope in your garden, large ground-scurrying wolf spiders in your yard, or spindly cellar spiders in your basement, this new sheet-web-building spider is probably one you haven’t seen before. The reason is that it’s known from a single cave in the world, Stygeon River Cave, in southern Indiana.

The University of Indianapolis assistant professor, Dr. Marc Milne, described the rare species in the open access journal Subterranean Biology with the help of a University of Indianapolis alumnus, Elizabeth Wells, who illustrated the spider for the manuscript.

Sheet weavers, also known as dwarf spiders or money spiders, are minute creatures growing no larger than a few centimetres in length, which makes them particularly elusive. Their peculiar webs are flat and sheet-like, hence their common English name.

Female of the new species *Islandiana lewisi*

The new spider, Islandiana lewisi, is an homage. Milne was shown the spider by a fellow scientist, Dr. Julian Lewis, who noticed the critter on one of his many cave expeditions. In appreciation for his help, Milne and Wells named the spider after Lewis.

This is the fifteenth species in its genus (Islandiana) and the fifth known to live exclusively in caves. It has been over 30 years since the last species has been added to this group.

At about 2 mm in size, Islandiana lewisi is thought to feed on even smaller arthropods, such as springtails living in the debris on the cave floor. It is unknown when it reproduces or if it exists anywhere else. The spider is likely harmless to humans.

The collectors of the spider, Milne and Lewis, described the hostile conditions within the cave, which the new species calls home: “because the cave floods from time to time, the insides were wet, muddy, slippery, and dangerous to walk on without the proper equipment.”

Milne and Lewis found the spider in small, horizontal webs between large, mud-caked boulders in the largest room in the cave. It was collected in October 2016 with the permission of the landowner.

Milne hypothesized that he had collected something special, stating, “I didn’t know what the spider was at first, I just thought it was odd that so many were living within this dark cave with no other spider species around.”

After returning to the lab and inspecting the spider under a microscope, Milne initially misidentified the species. However, when he re-examined it months later, he realized that the species was indeed new to science.

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Original source:

Milne MA, Wells E (2018) A new species of spider (Araneae, Linyphiidae, Islandiana) from a southern Indiana cave. Subterranean Biology 26: 19-26. https://doi.org/10.3897/subtbiol.26.25605

Journal of Hymenoptera Research links Crocodile Dundee, Toblerone, Game of Thrones & Alien

A myriad of species and genera new to science, including economically important wasps drawing immediate attention because of their amusing names and remarkable physical characters, in addition to work set to lay the foundations for future taxonomic and conservation research, together comprise the latest 64th issue of Journal of Hymenoptera Research (JHR).

The species *Qrocodiledundee outbackense*

Two genera (Qrocodiledundee and Tobleronius) named after the action comedy Crocodile Dundee and the chocolate brand Toblerone are only a couple of the 14 new genera from the monograph of the microgastrine wasps of the world’s tropical regions, authored by Dr Jose Fernandez-Triana and Caroline Boudreault of the Canadian National Collection of insects in Ottawa. In their article, the team also describes a total of 29 new species, where five of them carry the names of institutions holding some of the most outstanding wasp collections.

Another curiously named species of microgastrine wasp described in the new JHR issue, is called Eadya daenerys in reference to Daenerys Targaryen, a fictional character known from the best-selling book series A Song of Ice and Fire by George R. R. Martin, and the blockbuster TV show Game of Thrones. Discovered by University of Central Florida‘s Ryan Ridenbaugh, Erin Barbeau and Dr Barbara Sharanowski as a result of a collaboration between biocontrol researchers and taxonomists, the new species might not be in control of three dragons, nor a ruler or protector of whole nations. However, by being a potential biocontrol agent against a particular group of leaf beetle pests, it could spare the lives of many eucalyptus plantations around the world.

Furthermore, a wasp named Dolichogenidea xenomorph, which parasitises other eucalyptus pests, is also named after a character from a sought-after franchise. The scriptwriters of the horror sci-fi movie series Alien are thought to have been thinking of parasitic wasps when they came up with the character Xenomorph, remind authors Erinn Fagan-Jeffries, Dr Steven Cooper and Dr Andrew Austin. Additionally, the team from University of Adelaide and the South Australian Museum point out that the species name translates to ‘strange form’ in Greek, which perfectly suits the characteristic remarkably long ovipositor of the new wasp.

In another paper of the same journal issue, Dr. Jean-Luc Boevé, Royal Belgian Institute of Natural Sciences, Diego Domínguez, Universidad Técnica Particular de Loja, Ecuador, and Dr David Smith, Smithsonian’s National Museum of Natural History, USA, publish an illustrated list of the wasp-related sawflies, which they collected from northern Ecuador a few years ago. They also provide a checklist of the country’s species.

In conclusion, the fifth paper, authored by Serbian scientists Dr Milana Mitrovic Institute for Plant Protection and Environment, and Prof Zeljko

Tomanovic, University of Belgrade, studies ways to extract DNA from dry parasitoid wasps from the natural history archives decades after their preservation. In their work, they make it clear that such projects are of great importance for future taxonomic and conservation research, as well as agriculture.

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The open access Journal of Hymenoptera Research is published bimonthly by the scholarly publisher Pensoft on behalf of the International Society of Hymenopterists.

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Original sources:

Boeve; J, Dominguez D, Smith D (2018) Sawflies from northern Ecuador and a checklist for the country (Hymenoptera: Argidae, Orussidae, Pergidae, Tenthredinidae, Xiphydriidae). Journal of Hymenoptera Research 64: 1-24. https://doi.org/10.3897/jhr.64.24408

Ridenbaugh RD, Barbeau E, Sharanowski BJ (2018) Description of four new species of Eadya (Hymenoptera, Braconidae), parasitoids of the Eucalyptus Tortoise Beetle (Paropsis charybdis) and other Eucalyptus defoliating leaf beetles. Journal of Hymenoptera Research 64: 141-175. https://doi.org/10.3897/jhr.64.24282

Fagan-Jeffries EP, Cooper SJB, Austin AD (2018) Three new species of Dolichogenidea Viereck (Hymenoptera, Braconidae, Microgastrinae) from Australia with exceptionally long ovipositors. Journal of Hymenoptera Research 64: 177-190. https://doi.org/10.3897/jhr.64.25219

Mitrovic M, Tomanovic Z (2018) New internal primers targeting short fragments of the mitochondrial COI region for archival specimens from the subfamily Aphidiinae (Hymenoptera, Braconidae). Journal of Hymenoptera Research 64: 191-210. https://doi.org/10.3897/jhr.64.25399

First-ever fern checklist for Togo to help decision makers in the face of threats to biodiversity

Maidenhair fern (*Adiantum schweinfurthii*) occurring in dense forests.

Ferns and their allied species, which together comprise the pteridophytes, are vascular non-flowering plants that reproduce via spores. Many of their species are admired for their aesthetics.

However, despite being excellent bioindicators that allow for scientists and decision-makers to monitor the state of ecosystems in the face of climate change and global biodiversity crisis, these species are too often overlooked due to their relatively small size and lack of vivid colours.

Spike moss (*Selaginella versicolor*) with a preference for very humid and shaded forests.

To bridge the existing gaps in the knowledge about the diversity of ferns and their allied species, while also seeking to identify the ways these plants select their habitats and react to the changes occurring there later on, a research team from Togo and France launched an ambitious biodiversity project in 2013. As for the setting of their long-term study, they chose Togo – an amazingly species-rich country in Western Africa, whose flora expectedly turned out to be hugely understudied.

Having concluded their fern project in 2017, scientists Komla Elikplim Abotsi and Kouami Kokou from the Laboratory of Forestry Research, University of Lomé, Togo, who teamed up with Jean-Yves Dubuisson and Germinal Rouhan, both affiliated with the Institute of Systematics Evolution and Biodiversity (UMR 7205), France, have their first findings published in a taxonomic paper in the open access Biodiversity Data Journal.

In this first-of-a-kind checklist of Togolese ferns, the researchers record as many as 73 species previously not known to inhabit the country, including 12 species introduced for horticultural purposes. As a result of their 4-year study, the pteridophyte diversity of Togo – a country barely taking up 56,600 km² – now counts a total of 134 species.

Still, the authors believe that there are even more species waiting to be discovered on both national and global level.

“Additional investigations in the difficult to access areas of the far north of the country, and Togo Mountains are still needed to fill possible biodiversity data gaps and enable decision-makers to make the right decisions,” say the researchers.

The triangular staghorn species *Platycerium stemaria* living on a coffee tree branch.

In addition to their taxonomic paper, the authors are also set to publish an illustrated guide to the pteridophytes of Togo, in order to familiarise amateur botanists with this fascinating biodiversity.

Original source:
Abotsi KE, Kokou K, Dubuisson J-Y, Rouhan G (2018) A first checklist of the Pteridophytes of Togo (West Africa). Biodiversity Data Journal 6: e24137. https://doi.org/10.3897/BDJ.6.e24137

Six new species of goblin spiders named after famous goblins and brownies

Fictional characters originally ‘described’ by famous English children’s writer Enid Blyton have given their names to six new species of minute goblin spiders discovered in the diminishing forests of Sri Lanka.

The goblins Bom, Snooky and Tumpy and the brownies Chippy, Snippy and Tiggy made their way from the pages of: “The Goblins Looking-Glass” (1947), “Billy’s Little Boats” (1971) and “The Firework Goblins” (1971) to the scientific literature in a quest to shed light on the remarkable biodiversity of the island country of Sri Lanka, Indian Ocean.

As a result of their own adventure, which included sifting through the leaf litter of the local forests, scientists Prof. Suresh P. Benjamin and Ms. Sasanka Ranasinghe of the National Institute of Fundamental Studies, Sri Lanka, described a total of nine goblin spider species in six genera as new to science. Two of these genera are reported for the very first time from outside Australia.

Their paper is published in the open access journal Evolutionary Systematics.

With a total of 45 species in 13 genera, the goblin spider fauna in Sri Lanka – a country taking up merely 65,610 km2 – is already remarkably abundant. Moreover, apart from their diversity, these spiders amaze with their extreme endemism. While some of the six-eyed goblins can only be found at a few sites, other species can be seen nowhere outside a single forest patch.

“Being short-range endemics with very restricted distributions, these species may prove to be very important when it comes to monitoring the effects of climate change and other threats for the forest habitats in Sri Lanka,” explain the researchers.

In European folklore, goblins and brownies are known as closely related small and often mischievous fairy-like creatures, which live in human homes and even do chores while the family is asleep, since they avoid being seen. In exchange, they expect from their ‘hosts’ to leave food for them.

Similarly, at size of a few millimetres, goblin spiders are extremely tough to notice on the forest floors they call home. Further, taking into consideration the anthropogenic factors affecting their habitat, the arachnids also turn out to be heavily dependent on humans.

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Original source:

Ranasinghe UGSL, Benjamin SP (2018) Taxonomic descriptions of nine new species of the goblin spider genera Cavisternum, Grymeus, Ischnothyreus, Opopaea, Pelicinus and Silhouettella (Araneae, Oonopidae) from Sri Lanka. Evolutionary Systematics 2: 65-80. https://doi.org/10.3897/evolsyst.2.25200

Museum collection reveals distribution of Carolina parakeet 100 years after its extinction

While 2018 marks the centenary of the death of the last captive Carolina parakeet – North America’s only native parrot, a team of researchers have shed new light on the previously known geographical range of the species, which was officially declared extinct in 1920.

Combining observations and specimen data, the new Carolina parakeet occurrence dataset, recently published in the open access Biodiversity Data Journal by Dr Kevin Burgio, , Dr Colin Carlson, University of Maryland and Georgetown University, and Dr Alexander Bond, Natural History Museum of London, is the most comprehensive ever produced.

The new study provides unprecedented information on the birds range providing a window into the past ecology of a lost species.

“Making these data freely available to other researchers will hopefully help unlock the mysteries surrounding the extinction and ecology of this iconic species. Parrots are the most at-risk group of birds and anything we can learn about past extinctions may be useful going forward,” says the study’s lead author, Kevin Burgio.

The observational recordings included in the study have been gleaned from a wide variety of sources, including the correspondence of well-known historical figures such as Thomas Jefferson and the explorers Lewis and Clark.

The study team referenced recorded sightings spanning nearly 400 years. The oldest recorded sighting dates back to 1564, and was found in a description of the current state of Florida written by Rene Laudonniere in 1602.

Alongside the written accounts, the researchers included location data from museum specimens. These include 25 bird skins from the Natural History Museum’s Tring site, whose skin collection is the second largest of its kind in the world, with almost 750,000 specimens representing about 95 per cent of the world’s bird species. Thereby, the study proves what invaluable resources museum collections can be.

“The unique combination of historical research and museum specimens is the only way we can learn about the range of this now-extinct species. Museums are archives of the natural world and research collections like that of the Natural History Museum are incredibly important in helping to increase our understanding of biodiversity conservation and extinction,” says Alex Bond.

“By digitising museum collections, we can unlock the potential of millions of specimens, helping us to answer some of today’s big questions in biodiversity science and conservation.”

It is hoped that this research will be the beginning of a wider reaching work that will explore further into the ecology of this long lost species.

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Original source:

Burgio KR, Carlson CJ, Bond AL (2018) Georeferenced sighting and specimen occurrence data of the extinct Carolina Parakeet (Conuropsis carolinensis) from 1564 – 1944. Biodiversity Data Journal 6: e25280. https://doi.org/10.3897/BDJ.6.e25280

Naming rights for 5 new snail-sucking snake species auctioned to save rainforests in Ecuador

*Sibon bevridgelyi* is arguably the prettiest of the lot. Photo by Alejandro Arteaga.

The existence of five delightfully weird snail-sucking snakes slithering through the forest floors of Ecuador was announced by a group of scientists in a study in the open access journal Zookeys.

Believe or not, there is an entire group of snakes for which snails are number one on their menu. This is why their jaws are modified in such a way that they can suck the viscous slimy body of a snail right out of its shell.

*Dipsas bobridgelyi* trying to suck a snail out of its shell. Photo by Matthijs Hollanders.

Luckily for us, these snakes are harmless to humans. However, humans are not harmless to them. Four out of the five newly discovered species are already facing the possibility of becoming extinct, as the forest remnants they call home are currently being destroyed.

In a bid to take care after the unfortunate reptiles, the scientists auctioned the naming rights for the new species at a recent event in New York City. The money are to purchase and save a previously unprotected 72 ha (178 acre) plot of land where some of these species live.

To do so, Fundación Jocotoco is to add the purchased plot to the Buenaventura reserve, in order to expand the only protected area where two of the new snakes are found, and prevent these endangered snake species from going extinct.

*Dipsas bobridgelyi*. Photo by Alejandro Arteaga.

Three of the five species were discovered during a series of expeditions to three rainforests in Ecuador between 2013 and 2017, conducted by Alejandro Arteaga, an Ecuadorian–Venezuelan PhD student at the American Museum of Natural History and scientific director of Tropical Herping, who partnered with Dr. Alex Pyron, The George Washington University and National Museum of Natural History, USA.

In another habitat type, the dry forest, Ecuadorian scientists Dr. Omar Torres-Carvajal, Pontificia Universidad Católica del Ecuador (PUCE), David Salazar-Valenzuela, Universidad Tecnológica Indoamérica, Diego Cisneros-Heredia, Universidad San Francisco de Quito, Juan Carlos Sánchez, Universidad del Azuay, Mario Yánez-Muñoz, Instituto Nacional de Biodiversidad (INABIO), and Peruvian scientist Pablo Venegas, CORBIDI, noted the existence of the other two new species.

“We had to let people know that these cool snakes exist,” Alejandro said, “and that these species might soon stop to exist, and we need people’s help to protect the snake’s habitat.”

In order to confirm these five snakes as new species, the team of researchers, particularly Drs. Konrad Mebert, Universidade Estadual de Santa Cruz, Nicolás Peñafiel, Universidad Tecnológica Indoamérica, Gabriela Aguiar, Tropical Herping, and Timothy Colston, The George Washington University and National Museum of Natural History, USA, counted scales and gathered measurements from more than 200 museum specimens, and extracted DNA from nearly 100 snakes.

PhD student Alejandro Arteaga measured snake specimens at various museums, including the American Museum of Natural History in New York City.

Having made the highest bid at the auction, Rainforest Trust (RT) and Bob Ridgely got to name three of the five new snakes.

Thus, the species Dipsas georgejetti now honors George Jett, who supported the inception of Fundación Jocotoco’s reserves in Ecuador; while Dipsas bobridgelyi is a tribute to Dr. Robert “Bob” S. Ridgely, a leading ornithologist and distinguished conservationist who helped the establishment of the Buenaventura reserve. Bob, who was at the auction, chose the name Sibon bevridgelyi (Bev Ridgely’s Snail-Eater) to honor his father.

*Dipsas georgejetti* is found in only in dry forests in the coast of Ecuador. Photo by Alejandro Arteaga.

The remaining two snail-eating species, Dipsas oswaldobaezi and D. klebbai, were named after Dr. Oswaldo Báez and Casey Klebba, respectively, in recognition for their passion for Ecuador’s biodiversity and conservation.

*Dipsas klebbai* is the only one among the new species currently not threatened with extinction. Photo by Alejandro Arteaga.

“Several companies let you name a star after a loved one,” Alejandro says, “but, generally, such names have no formal validity. Naming an entire species after someone you love or admire is different. With few exceptions, this is the name that both the general public and the whole scientific community will use. So, why not let people choose the name of a species in exchange for a donation that protects its habitat?”

*Dipsas oswaldobaezi* photographed at Reserva la Ceiba. Photo by Jose Vieira.

The act of naming species is essential in raising awareness about the existence of a species and its risk of extinction, but it also provides an opportunity to recognize and honor the work of the people and institutions fighting to protect the species.

“Naming species is at the core of biology,” says Dr. Juan M. Guayasamin, co-author of the study and a professor at Universidad San Francisco in Quito. “Not a single study is really complete if it is not attached to the name of the species, and most species that share the planet with us are not described.”

“Everybody knows elephants and orangutans,” says Dr. Martin Schaefer of Fundación Jocotoco, “but some reptiles and amphibians are even more threatened. Yet, we still lack even the basic information to protect them better. This is why the work by scientists is so important; it provides the necessary information to guide our conservation decisions.”

“Through photography or by joining a scientific expedition, the general public can learn more about hidden biodiversity and how threatened it is,” says Lucas Bustamante of Tropical Herping. “This is a model to obtain support for research and conservation while recruiting more environmental ambassadors.”

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Find out more about the Tropical Herping’s scientific discoveries and expeditions on Instagram and Facebook.

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Watch the video below to follow entomologist and science communicator Phil Torres as he joins Alejandro Arteaga for one of his expeditions to document what it takes to find a new snake.

Academic paper:

Arteaga A, Salazar-Valenzuela D, Mebert K, Peñafiel N, Aguiar G, Sánchez-Nivicela JC, Pyron RA, Colston TJ, Cisneros-Heredia DF, Yánez-Muñoz MH, Venegas PJ, Guayasamin JM, Torres-Carvajal O (2018) Systematics of South American snail eating snakes (Serpentes, Dipsadini), with the description of five new species from Ecuador and Peru. ZooKeys 766: 79–147. https://doi.org/10.3897/zookeys.766.24523

Plazi and the Biodiversity Literature Repository (BLR) awarded EUR 1.1 million from Arcadia Fund to grant free access to biodiversity data

Plazi has received a grant of EUR 1.1 million from Arcadia – the charitable fund of Lisbet Rausing and Peter Baldwin – to liberate data, such as taxonomic treatments and images, trapped in scholarly biodiversity publications.

The project will expand the existing corpus of the Biodiversity Literature Repository (BLR), a joint venture of Plazi and Pensoft, hosted on Zenodo at CERN. The project aims to add hundreds of thousands of figures and taxonomic treatments extracted from publications, and further develop and hone the tools to search through the corpus.

The BLR is an open science community platform to make the data contained in scholarly publications findable, accessible, interoperable and reusable (FAIR). BLR is hosted on Zenodo, the open science repository at CERN, and maintained by the Switzerland-based Plazi association and the open access publisher Pensoft.

In its short existence, BLR has already grown to a considerate size: 35,000+ articles have been added, and extracted from 600+ journals. From these articles, more than 180,000 images have also been extracted and uploaded to BLR, and 225,000+ sub-article components, including biological names, taxonomic treatments or equivalent defined blocks of text have been deposited at Plazi’s TreatmentBank. Additionally, over a million bibliographic references have been extracted and added to Refbank.

The articles, images and all other sub-article elements are fully FAIR compliant and citable. In case an article is behind a paywall, a user can still access its underlying metadata, the link to the original article, and use the DOI assigned to it by BLR for persistent citation.

“Generally speaking, scientific illustrations and taxonomic treatments, such as species descriptions, are one of the best kept ‘secrets’ in science as they are neither indexed, nor are they citable or accessible. At best, they are implicitly referenced,” said Donat Agosti, president of Plazi. “Meanwhile, their value is undisputed, as shown by the huge effort to create them in standard, comparative ways. From day one, our project has been an eye-opener and a catalyst for the open science scene,” he concluded.

Though the target scientific domain is biodiversity, the Plazi workflow and tools are open source and can be applied to other domains – being a catalyst is one of the project’s goals.

While access to biodiversity images has already proven useful to scientists, but also inspirational to artists, for example, the people behind Plazi are certain that such a well-documented, machine-readable interface is sure to lead to many more innovative uses.

To promote BLR’s approach to make these important data accessible, Plazi seeks collaborations with the community and publishers, to remove hurdles in liberating the data contained in scholarly publications and make them FAIR.

The robust legal aspects of the project are a core basis of BLR’s operation. By extracting the non-copyrightable elements from the publications and making them findable, accessible and re-usable for free, the initiative drives the move beyond the PDF and HTML formats to structured data.

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To participate in the project or for further questions, please contact Donat Agosti, President at Plazi at info@plazi.org

Additional information:

About Plazi:

Plazi is an association supporting and promoting the development of persistent and openly accessible digital taxonomic literature. To this end, Plazi maintains TreatmentBank, a digital taxonomic literature repository to enable archiving of taxonomic treatments; develops and maintains TaxPub, an extension of the National Library of Medicine / National Center for Biotechnology Informatics Journal Article Tag Suite for taxonomic treatments; is co-founder of the Biodiversity Literature Repository at Zenodo, participates in the development of new models for publishing taxonomic treatments in order to maximize interoperability with other relevant cyberinfrastructure components such as name servers and biodiversity resources; and advocates and educates about the vital importance of maintaining free and open access to scientific discourse and data. Plazi is a major contributor to the Global Biodiversity Information Facility.

About Arcadia Fund:

Arcadia is a charitable fund of Lisbet Rausing and Peter Baldwin. It supports charities and scholarly institutions that preserve cultural heritage and the environment. Arcadia also supports projects that promote open access and all of its awards are granted on the condition that any materials produced are made available for free online. Since 2002, Arcadia has awarded more than $500 million to projects around the world.