The beta release of an innovative collaborative stand-alone authoring tool transforms manuscript preparation with semantic enrichment and real-time collaboration capabilities.
Scholarly publisher and technology provider Pensoft Publishers announces the beta launch of ORPHO, a revolutionary online platform designed to streamline collaborative scientific writing and produce AI-ready, future-proof scholarly literature.
ORPHO presents a significant advancement in scholarly publishing technology, combining intuitive writing features with sophisticated semantic enrichment capabilities. The new platform builds upon Pensoft’s fifteen years of experience as a developer of semantic publishing infrastructure.
Key Features
Within a shared online workspace, researchers can start with built-in customisable templates, create their own or import an existing file. They can then team up with collaborators in real time using track changes, role-based user rights, inline comments, and document-level chat. More significantly, ORPHO automatically structures scientific content according to international publishing standards, making research outputs findable, discoverable, interoperable and reusable (FAIR) once published.
Unlike its predecessor, the ARPHA Writing Tool, ORPHO is available as a standalone real-time collaborative workspace decoupled from journals hosted on Pensoft’s ARPHA Publishing Platform. Once a manuscript is ready, authors receive AI-FAIR machine-readable content that can be formatted to meet multiple journal requirements at the click of a button.
The platform’s adaptability to domain-specific workflows is currently being piloted in biodiversity science. ORPHO integrates seamlessly with leading biodiversity data aggregators, including the Global Biodiversity Information Facility (GBIF), Barcode of Life Data Systems (BOLD) and PlutoF, via import and export facilities for structured data, making ORPHO particularly valuable for researchers handling taxonomic, ecological and biodiversity data.
ORPHO: A new intelligent workspace for scientific writing.
Why ORPHO?
The name draws inspiration from multiple sources which reflect the tool’s philosophy and heritage. Named after Orphium: a unique plant genus endemic to South Africa whose sole species (Orphium frutescens) is known as the sea rose, ORPHO reflects the platform’s distinctive nature, heritage, and core philosophy.
It also evokes Orpheus, the legendary musician of ancient Thrace whose home region, the Rhodopi Mountains, lies in present-day Bulgaria, where ORPHO’s developer, Pensoft, is headquartered. The name thus honours the tool’s origins whilst embodying the exceptional creative performance it enables.
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Prof. Dr. Lyubomir Penev, founder and CEO of Pensoft, comments:
“We are well aware that researchers today face an overwhelming list of formatting requirements and technical demands in an AI-driven landscape. It is true that rapid technological advancement presents both immense opportunities and mounting complexities for researchers.
We built ORPHO to remove that friction by offering an intuitive, collaborative workspace that lets scientists focus on their research. As a scientific publisher, our mission is to make scholarly publishing a seamless, rewarding experience fit for the modern age.”
The beta release invites researchers, institutions and publishing platforms to trial ORPHO and provide feedback. Access is available at orpho.net.
Pensoft has been awarded the Seal of Recognition for the FAO AGRIS Active Data Provider of the Year for 2027. The seal is granted by the Food and Agriculture Organisation of the United Nations through its AGRIS initiative, and it recognises institutions that consistently share open-access agricultural research with the global community.
Notably, Pensoft joined the FAO AGRIS network back in 2024, and the organisation has renewed our seal every year since, a recognition we’re proud to have kept.
What has changed is the scale of our contribution. In 2024, Pensoft’s records on AGRIS numbered just under 15,000. Today, that figure has doubled to nearly 30,000, drawn from all 51 of our journals that fall within the scope of FAO AGRIS. The subjects covered are wide-ranging, spanning taxonomy, biodiversity, conservation and biogeography – these are all areas that feed directly into sustainable agriculture and natural resource management.
Through AGRIS, this research travels well beyond our own journals to researchers, policymakers and practitioners worldwide, adding to the shared pool of open knowledge that supports global food security and environmental sustainability. We’re glad to keep contributing to that effort, and look forward to continuing our work with FAO AGRIS in the years to come.
About FAO
The Food and Agriculture Organisation (FAO) is a specialised agency of the United Nations that leads international efforts to defeat hunger. Its goal is to achieve food security for all, ensuring that people have regular access to enough high-quality food to lead active, healthy lives. With 194 members, 193 countries and the European Union, FAO works in over 130 countries worldwide.
About Pensoft
Founded in 1992 “by scientists, for scientists,” Pensoft is an academic open-access publishing company well known worldwide for its cutting-edge publishing tools, workflows and methods for text and data publishing of journals, books and conference materials. In 2010, Pensoft became the first scientific publisher to introduce semantic enrichments in scholarly publications. Through its Research and Technical Development department, the company is involved in a range of research and technology projects.
Pensoft participated in this year’s 9th European Conference on Tropical Ecology (ECTE 2026) and signed a Memorandum of Understanding with the Society for Tropical Ecology (gtö).
Under the theme ‘Species-Ecosystems-People,’ the conference offered a multidisciplinary perspective through 175 oral presentations and 42 posters across 17 thematic sessions, bridging the gap between fundamental ecological research and the sustainable restoration of vital ecosystems.
From the very first day and throughout the week, the Pensoft booth was buzzing with people and activities. Attendees had the chance to explore our diverse portfolio of journals, many of which align seamlessly with the ‘Species-Ecosystems-People’ theme, including:
Editors of existing or yet-to-be-launched Diamond and Gold Open Access journals were also invited to visit the Pensoft stand to learn more about the process and benefits of migrating to or launching a journal on the ARPHA Platform.
Developed by Pensoft to power its own well-renowned scientific journals, ARPHA is now a globally recognised end-to-end solution for innovative, technologically advanced scientific publishing that comes with multiple in-house human-provided services.
Beyond browsing journals and discussing publishing opportunities, visitors engaged with our interactive “Pin Your Favourite Species” board and took promotional materials and stickers featuring the stunning artwork of Pensoft’s in-house scientific illustrator Denitsa Peneva, which proved to be a major visual draw.
A milestone partnership
Dr. Katarina Sam, president of the Society for Tropical Ecology (gtö) at Pensoft’s booth.
On 24th of February, Dr. Katerina Sam (gtö) signed the partnership. This MoU aims to promote research activities and optimise the dissemination of scientific knowledge within the tropical ecology community to ensure that important research findings reach a global audience through robust publication support.
One major highlight of this year’s conference was the signing of a Memorandum of Understanding (MoU) between the Society for Tropical Ecology (gtö) and Pensoft during the general assembly.
Keynote speakers
Our team on-site was delighted to meet several Pensoft authors who took the stage as keynote speakers to share their expertise.
On February 24th, Prof. Alexandre Antonelli of the Royal Botanic Gardens, Kew delivered a compelling lecture on “Illuminating Biodiversity Darkspots,” reminding us that over 90% of fungi remain unknown and 45% of plants are at risk of extinction.
Prof. Antonelli during his keynote talk at ECTE 2026.
Prof. Antonelli during his keynote talk at ECTE 2026.
That same day, Dr. Maria Fungomeli of the National Museums of Kenya presented her keynote on “Biodiversity Patterns in the Kenyan Coastal Forests,” highlighting the vital links between coastal ecosystems, culture, and community.
A valued author and reviewer for VCS, Dr. Fungomeli has also contributed to several journals powered by ARPHA Platform, including Pensoft’s Biodiversity Data Journal and ZooKeys, as well as Senckenberg’s Contributions to Entomology.
Dr. Fungomeli during her keynote talk.
Dr. Fungomeli at Pensoft’s booth.
On February 25th, Prof. Rob Marchant of the University of York, an author in our open-access journal African Invertebrates, delivered his talk, “Embedding the Past for Balanced Future Tropical Mountain Social Ecological Systems.”
He explored how shifts in human-nature interactions over the last 6,000 years can help researchers understand the complex transitions from original forest extents to our modern landscapes. See Prof. Marchant’s paper in African Invertebrates here.
Her presentation, “Aromatic delight: Revealing diversity and function of fruit microbiome in seed dispersal,” proposed a fascinating shift in ecological understanding.
During her talk, she suggested the potential that microbes co-evolved with animals and plants to support scent-driven seed dispersal effectively transforming a traditional bipartite interaction (plant-animal seed dispersal) into a tripartite one.
Dr. Chronopoulou received a waiver for a free publication in any open-access journal within the Pensoft portfolio.
After a fantastic week in Passau at ECTE 2026, Pensoft is now looking forward to the 10th European Conference on Tropical Ecology, which will take place in Aarhus, Denmark. There, Pensoft plans to establish further partnerships and continue its support for open science in insect research. See you there!
The agreement encompasses five key research and medical bodies, and allows corresponding authors to publish their findings without individual Article Processing Charges.
Pensoft and the University of Zurichhave signed a comprehensive Open Access (OA) agreement, starting a partnership that enables researchers at participating institutions to publish their findings in Pensoft’s peer-reviewed journals without incurring individual Article Processing Charges (APCs).
Under this new framework, publishing costs for corresponding authors affiliated with the respective institutions are 100% covered by a centralised institutional deposit secured by the University of Zurich. By removing financial barriers, the agreement encourages scientists to disseminate their work to both the academic community and the wider public, making research immediately and freely available upon publication.
This initiative ensures that research is shared under open licences in strict accordance with the FAIR principles—making data Findable, Accessible, Interoperable, and Reusable.
“We are excited to start this partnership with the University of Zurich and sign an agreement that reflects our strong commitment to inclusive and equitable open science. By supporting researcher-driven publishing, we continue to foster a sustainable environment for high-impact scientific communication.”
Prof. Lyubomir Penev, CEO of Pensoft
“We are pleased to extend our portfolio of gold open access journals, in which our researchers can publish their findings without paying individual APCs. We thereby strengthen our commitment to open research information.”
University Library Zurich
Are you affiliated with a research institution operating with OA agreements? Is your institution interested in helping resident researchers navigate the complex processes underpinning academic publishing and knowledge sharing? Reach out to <publishing@pensoft.net> to discuss a potential collaboration.
The agreement covers almost 100 institutions, including Karolinska Institutet, Lund University, Uppsala University, and the Royal Swedish Academy of Sciences.
Pensoft and the Bibsam Consortium, operated by the National Library of Sweden, are pleased to announce the signing of a comprehensive Open Access (OA) agreement, marking a significant step in the transition towards a more transparent and open scholarly publishing landscape in Sweden.
Thanks to this move, researchers at participating institutions will be able to publish their findings in 65 journals published by Pensoft or using its advanced publishing platform ARPHA, including flagship titles such as ZooKeys, PhytoKeys, Biodiversity Data Journal, NeoBiota and IMA Fungus, without incurring individual article processing charges (APCs).
All authors affiliated with participating institutions can benefit from this agreement, with publishing costs 100% covered by an institutional deposit secured by the National Library of Sweden.
Unlike subscription-based systems, an OA framework ensures that scientific findings are immediately and freely available to the global community, supporting the global shift toward accessible science and adhering to the FAIR principles (Findable, Accessible, Interoperable, and Reusable).
OA agreements like this one reduce the financial burden on scientists and encourage them to share their work with both academia and the wider public, ultimately lowering barriers to sharing knowledge in a time when scientific input is key to resolving global challenges.
“We are excited to start this partnership with Bisbam and sign an agreement that reflects our strong commitment to open science. By supporting researcher-driven publishing, we continue to foster a sustainable environment for high-impact scientific communication.”
Prof. Lyubomir Penev, CEO of Pensoft
“We are delighted to announce the addition of Pensoft Publishers to our portfolio of nationally funded agreements for 2026. This represents an important step towards achieving full open access to scientific publications in Sweden.”
Niklas Willén, License Manager at Bibsam Consortium and National Library of Sweden
Are you affiliated with a research institution operating with OA agreements? Is your institution interested in helping resident researchers navigate the complex processes underpinning academic publishing and knowledge sharing? Reach out to <publishing@pensoft.net> to discuss a potential collaboration.
Published in the journal Subterranean Biology, the paper has become by far the most popular research article ever published across Pensoft’s scientific journal portfolio in terms of both news media coverage and overall online attention.
Issue 53 (2025) of Subterranean Biology, where the spider megacolony paper was published.
Thanks to an integration with our partners at Altmetric, we have quantifiable metrics that measure just how exceptional the attention to this article is. The paper’s Altmetric Attention Score of 2254 places it in the top 5% of all research outputs scored by Altmetric globally. For less than a month, it became more popular than nearly 27,000 research papers published by Pensoft and tracked by Altmetric.
The study was covered globally by major news outlets, reaching audiences far beyond niche scientific circles. The article garnered over 2,200 online mentions linking directly to the publication, with Altmetric tracking attention from 290 news outlets specifically. The story was featured by numerous top global news organizations, including The New York Times, BBC, The Washington Post, The Independent, Die Welt and NBC News,as well as popular science publications such as Smithsonian Magazine and Science Alert.
Beyond traditional media, the study gained significant traction on various social platforms, including YouTube, TikTok and Instagram, alongside mentions on Bluesky and X.
The paper details fascinating discovery from the Sulfur Cave, which sits on the border between Albania and Greece. There, the research team documented an extraordinary spider community centered around a massive communal web spanning more than 100 square meters. This giant structure, dense enough to resemble a living curtain, is home to an estimated total of over 110,000 spiders, comprised of approximately 69,000 Tegenaria domestica and 42,000 Prinerigone vagans individuals.
A video of the spider colony in Sulfur cave. Courtesy Blerina Vrenozi
Crucially, this study marks the first documented instance of colonial behavior in both of these spider species, and the first recorded case of colonial web-building in a chemoautotrophic cave environment.
This unusual coexistence, where the larger, normally predatory T. domestica does not eat the smaller P. vagans, is believed to be facilitated by the cave’s total darkness and, most importantly, the overwhelming abundance of food resources. The ecosystem is sustained entirely without sunlight through chemoautotrophy, where sulfur-oxidizing bacteria form biofilms that support invertebrates that serve as the spiders’ primary, highly dense food source. This specialized, isolated environment has also driven the evolutionary adaptation of the spiders, which are genetically distinct from their surface relatives, illustrating the remarkable genetic plasticity that emerges under extreme environmental conditions.
We are proud that our journal Subterranean Biology is the platform for publishing such globally compelling research. This record success only confirms the widespread interest in high-quality, specialized scientific discoveries.
We continue our dedication to effective, high-reach science communication and look forward to sharing other compelling research with both scientists and the wider public.
The initiative aims to make it easier to access and use biodiversity data associated with published research, aligning with principles of Findable, Accessible, Interoperable, and Reusable (FAIR) data.
The data portals offer seamless integration of published articles and associated data elements with GBIF-mediated records. Now, researchers, educators, and conservation practitioners can discover and use the extensive species occurrence and other data associated with the papers published in each journal.
A video displaying an interactive map with occurrence data on the BDJ portal.
The collaboration between Pensoft and GBIF was recently piloted with the Biodiversity Data Journal (BDJ). Today, the BDJ hosted portal provides seamless access and exploration for nearly 300,000 occurrences of biological organisms from all over the world that have been extracted from the journal’s all-time publications. In addition, the portal provides direct access to more than 800 datasets published alongside papers in BDJ, as well as to almost 1,000 citations of the journal articles associated with those publications.
“The release of the BDJ portal and subsequent ones planned for other Pensoft journals should inspire other publishers to follow suit in advancing a more interconnected, open and accessible ecosystem for biodiversity research,” said Dr. Vince Smith, Editor-in-Chief of BDJ and head of digital, data and informatics at the Natural History Museum, London.
— GBIF @biodiversity.social/@gbif (@GBIF) March 10, 2025
“The programme will provide a scalable solution for more than thirty of the journals we publish thanks to our partnership with Plazi, and will foster greater connectivity between scientific research and the evidence that supports it,” said Prof. Lyubomir Penev, founder and chief executive officer of Pensoft.
On the new portals, users can search data, refining their queries based on various criteria such as taxonomic classification, and conservation status. They also have access to statistical information about the hosted data.
Together, the hosted portals provide data on almost 325,000 occurrence records, as well as over 1,000 datasets published across the journals.
A recent study published in the open-access journal African Invertebrates provides insights into the life history and behaviour of the endemic Cape autumn widow butterfly (Dira clytus), a species endemic to South Africa.
In the study, Silvia Mecenero of the Lepidopterists’ Society of Africa and Stephen Kirkman of Nelson Mandela University examine the species’ developmental stages and responses to environmental conditions, with implications for conservation efforts.
By rearing the subspecies Dira clytus clytus in controlled conditions, the researchers documented the butterfly’s complete life cycle, from egg to adult.
Photographs of the life stages of Diraclytusclytusa adult b eggs c, d newly hatched larva e first instar larva (three days old) f first instar larva preparing to moult (nine days old) g, h second instar larva i third instar larva j fourth instar larva k, l fifth instar larva m fifth instar larvae huddling together in a big group n pre-pupal form o, p pupa.
Two distinct pupation and adult emergence phases were identified over a period of a few months, influenced by cold temperatures, suggesting that environmental cues play a role in triggering these developmental events. The fact that two broods were found in a matter of months is interesting, because in the wild this species breeds only once a year.
The findings indicate that Dira clytus clytus could show some phenological plasticity in its response to climate change, by changing its timing of pupation and the number of broods within a year.
Such flexibility may not always be beneficial to butterflies, as shifts in phenology could lead to mismatches with the availability of their host plants. However, Dira clytus clytus is a generalist that feeds on a variety of grasses and may therefore be more adaptable to changes in its phenology.
The study was published as part of a commemorative collection of articles published in honour of the late ecologist Prof. Stefan H. Foord.
Original study
Mecenero S, Kirkman SP (2025) Life history and behavioural observations during the rearing of Dira clytus clytus (Linnaeus, 1764) (Insecta, Lepidoptera, Nymphalidae), with notes on implications for climate change adaptation. African Invertebrates 66(1): 65-72. https://doi.org/10.3897/AfrInvertebr.66.138082
Yet another hectic year has passed for our team at Pensoft, so it feels right to look back at the highlights from the last 12 months, as we buckle up for the leaps and strides in 2025.
In the past, we have used the occasion to take you back to the best moments of our most popular journals (see this list of 2023 highlights from ZooKeys, MycoKeys, PhytoKeys and more!); share milestones related to our ARPHA publishing platform (see the new journals, integrations and features from 2023); or let you reminisce about the coolest research published across our journals during the year(check out our Top 10 new species from 2021).
In 2022, when we celebrated our 30th anniversary on the academic scene, we extended our festive spirit throughout the year as we dived deep into those fantastic three decades. We put up Pensoft’s timeline and finished the year with a New Species Showdown tournament, where our followers on (what was back then) Twitter voted twice a week for their favourite species EVER described on the pages of our taxonomic journals.
Spoiler alert: we will be releasing our 2024 Top 10 New Species on Monday, 23 December, so you’d better go to the right of this screen and subscribe to our blog!
As we realised we might’ve been a bit biased towards our publishing activities over the years, this time, hereby, we chose to present you a retrospection that captures our best 2024 moments from across the departments, and shed light on how the publishing, technology and project communication endeavours fit together to make Pensoft what it is.
In truth, we take pride in being an exponentially growing family of multiple departments that currently comprises over 60 full-time employees and about a dozen freelancers working from all corners of the world, including Australia, Canada, Belgium and the United Kingdom. Together, we are all determined to make sure we continuously improve our service to all who have trusted us: authors, reviewers, editors, client journals, learned societies, research institutions, project consortia and other external collaborators.
After all, great deeds are only possible when you team up with great like-minded people!
In 2024, at Pensoft, we were hugely pleased to see a significant growth in the published output at almost all our journals, including record-breaking numbers in both submissions and publications at flagship titles of ours, including the Biodiversity Data Journal, PhytoKeys and MycoKeys.
Later in 2024, our colleagues, who work together with our clients to ensure their journals comply with the requirements of the top scholarly databases before they apply for indexation, informed us that another two journals in our portfolio have had their applications to Clarivate’s Web of Science successfully accepted. These are the newest journal of the International Association of Vegetation Science: Vegetation and Classification, and Metabarcoding and Metagenomics: a journal we launched in 2017 in collaboration with a team of brilliant scientists working together at the time within the DNAquaNet COST Action.
In 2024, we also joined the celebrations of our long-time partners at the Museum für Naturkunde Berlin, whose three journals: Zoosystematics and Evolution, Deutsche Entomologische Zeitschrift and Fossil Record are all part of our journal portfolio. This year marked the 10th Open Access anniversary of the three journals.
In the meantime, we also registered a record in new titles either joining the Pensoft portfolio or opting for ARPHA Platform’s white-label publishing solution, where journal owners retain exclusivity for the publication of their titles, yet use ARPHA’s end-to-end technology and as many human-provided services as necessary.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev with Prof. Dr. Marc Stadler, Editor-in-Chief of IMA Fungus and President of the International Mycological Association at the Pensoft booth at the 12th International Mycological Congress (August, the Netherlands).
Amongst our new partners are the International Mycological Association who moved their official journal IMA Fungus to ARPHA Platform. As part of Pensoft’s scholarly portfolio, the renowned journal joins another well-known academic title in the field of mycology: MycoKeys, which was launched by Pensoft in 2011. The big announcement was aptly made public at this year’s 12th International Mycological Congress where visitors of the Pensoft stand could often spot newly elected IMA President and IMA Fungus Chief editor: Marc Stadler chatting with our founder and CEO Lyubomir Penev by the Pensoft/MycoKeys booth.
On our end, we did not stop supporting enthusiastic and proactive scientists in their attempt to bridge gaps in scientific knowledge. In January, we launched the Estuarine Management and Technologies journal together with Dr. Soufiane Haddout of the Ibn Tofail University, Morocco.
Later on, Dr. Franco Andreone (Museo Regionale di Scienze Naturali, Italy) sought us with the idea to launch a journal addressing the role of natural history museums and herbaria collections in scientific progress. This collaboration resulted in the Natural History Collections and Museomics journal, officially announced at the joint TDWG-SPNHC conference in Okinawa, Japan in August.
Around this time, we finalised our similarly exciting journal project in partnership with Prof. Dr. Volker Grimm (UFZ, Germany), Prof. Dr. Karin Frank (UFZ, Germany), Prof. Dr. Mark E. Hauber (City University of New York) and Prof. Dr. Florian Jeltsch (University of Potsdam, Germany). The outcome of this collaboration is called Individual-based Ecology: a journal that aims to promote an individual-based perspective in ecology, as it closes the knowledge gap between individual-level responses and broader ecological patterns.
The three newly-launched journals are all published under the Diamond Open Access model, where neither access, nor publication is subject to charges.
As you can see, we have a lot to be proud of in terms of our journals. This is also why in 2024 our team took a record number of trips to attend major scientific events, where we got the chance to meet face-to-face with long-time editors, authors, reviewers and readers of our journals. Even more exciting was meeting the new faces of scientific research and learning about their own take on scholarship and academic journals.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev welcomed editors at PhytoKeys to the Pensoft-PhytoKeys-branded booth at the XX International Botanical Congress in July 2024 (Spain).
We cannot possibly comment on Pensoft’s tech progress in 2024 without mentioning the EU-funded project BiCIKL (acronym for Biodiversity Community Integrated Knowledge Library) that we coordinated for three years ending up last April.
This 36-month endeavour saw 14 member institutions and 15 research infrastructures representing diverse actors from the biodiversity data realm come together to improve bi-directional links between different platforms, standards, formats and scientific fields.
Following these three years of collaborative work, we reported a great many notable research outputs from our consortium (find about them in the open-science project collection in the Research Ideas and Outcomes journal, titled “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective”) that culminated in the Biodiversity Knowledge Hub: a one-stop portal that allows users to access FAIR and interlinked biodiversity data and services in a few clicks; and also a set of policy recommendations addressing key policy makers, research institutions and funders who deal with various types of data about the world’s biodiversity, and are thereby responsible to ensuring there findability, accessibility, interoperability and reusability (FAIR-ness).
Apart from coordinating BiCIKL, we also worked side-by-side with our partners to develop, refine and test each other’s tools and services, in order to make sure that they communicate efficiently with each other, thereby aligning with the principles of FAIR data and the needs of the scientific community in the long run.
During those three years we made a lot of refinements to our OpenBiodiv: a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System, and our ARPHA Writing Tool. The latter is an XML-based online authoring environment using a large set of pre-formatted templates, where manuscripts are collaboratively written, edited and submitted to participating journals published on ARPHA Platform. What makes the tool particularly special is its multiple features that streamline and FAIRify data publishing as part of a scientific publication, especially in the field of biodiversity knowledge. In fact, we made enough improvements to the ARPHA Writing Tool that we will be soon officially releasing its 2.0 version!
OpenBiodiv – The Open Biodiversity Knowledge Management System
ARPHA Writing Tool 2.0
Amongst our collaborative projects are the Nanopublications for Biodiversity workflow that we co-developed with KnowledgePixels to allow researchers to ‘fragment’ their most important scientific findings into machine-actionable and machine-interpretable statements. Being the smallest units of publishable information, these ‘pixels of knowledge’ present an assertion about anything that can be uniquely identified and attributed to its author and serve to communicate a single statement, its original source (provenance) and citation record (publication info).
Nanopublications for Biodiversity
In partnership with the Swiss-based Text Mining group of Patrick Ruch at SIB and the text- and data-mining association Plazi, we brought the SIB Literature Services (SIBiLS) database one step closer to solidifying its “Biodiversity PMC” portal and working title.
Understandably, we spent a lot of effort, time and enthusiasm in raising awareness about our most recent innovations, in addition to our long-standing workflows, formats and tools developed with the aim to facilitate open and efficient access to scientific data; and their integration into published scholarly work, as well as receiving well-deserved recognition for their collection.
We just can’t stress it enough how important and beneficial it is for everyone to have high-quality FAIR data, ideally made available within a formal scientific publication!
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
Pensoft’s CTO Teodor Georgiev talks about innovative methods and good practices in the publication of biodiversity data in scholarly papers at the First national meeting of the Bulgarian Barcode of Life (BgBOL) consortium (December, Bulgaria).
🤔What is a Data Paper?
👍 A means to describe a #dataset – like the ones on @GBIF – in a standardised, widely accepted #scientific article format.
👇🧵Highlights from @LyuboPenev's talk at the int'l symposium "#BiodiversityData in montane & arid Eurasia" in Kazakhstan 🇰🇿
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev presenting his “Data papers on biodiversity” talk at the “Biodiversity data in montane and arid Eurasia” symposium jointly organized by GBIF and by the Institute of Zoology of Republic of Kazakhstan (November, Kazakhstan).
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📸Today, at the @EASEeditors symposium, our @teodorpensoft gave a sneak peek into the AI-assisted tools at @ARPHAplatform we have been working on (e.g. Word -> JATS XML conversion) and the #ARPHA Writing Tool 2.0 (coming up in early 2025)!🎉
Pensoft’s CTO Teodor Georgiev presents new features and workflows currently in testing at the ARPHA Writing Tool 2.0 at the EASE Autumn Symposium 2024 (online event).Pensoft’s Head of Journal development, Marketing and PR Iva Boyadzhieva talks about Pensoft’s data publishing approach and innovations at the German Ecological Society 53rd Annual Conference (September, Germany).
Pensoft as a science communicator
At our Project team, which is undoubtedly the fastest developing department at Pensoft, science communicators are working closely with technology and publishing teams to help consortia bring their scientific results closer to policy actors, decision-makers and the society at large.
Ultimately, bridging the notorious chasm between researchers and global politics boils down to mutual understanding and dialogue.
Pensoft’s communication team attended COP16 (November 2024, Colombia) along with partners at the consortia of CO-OP4CBD, BioAgora and RESPIN: three Horizon Europe projects, whose communication and dissemination is led by Pensoft.
Throughout 2024, the team, comprising 20 science communicators and project managers, has been working as part of 27 EU-funded project consortia, including nine that have only started this year (check out all partnering projects on the Pensoft website, ordered from most recently started to oldest). Apart from communicating key outcomes and activities during the duration of the projects, at many of the projects, our team has also been actively involved in their grant proposal drafting, coordination, administration, platform development, graphic and web design and others (see all project services offered by Pensoft to consortia).
📸As leaders of the “Stakeholder engagement, comms & dissemination” WP at @BCubedProject, we joined the annual meeting to report on project branding, #scicomm & #DataManagement.
Naturally, we had a seat on the front row during many milestones achieved by our partners at all those 27 ongoing projects, and communicated to the public by our communicators.
Amongst those are the release of the InsectsCount web application developed within the Horizon 2020 project SHOWCASE. Through innovative gamification elements, the app encourages users to share valuable data about flower-visiting insects, which in turn help researchers gain new knowledge about the relationship between observed species and the region’s land use and management practices (learn more about InsectsCount on the SHOWCASE prroject website).
Another fantastic project output was the long-awaited dataset of maps of annual forest disturbances across 38 European countries derived from the Landsat satellite data archive published by the Horizon Europe project ForestPaths in April (find more about the European Forest Disturbance Atlas on the ForestPaths project website).
In a major company highlight, last month, our project team participated in COP29 in Baku, Azerbaijan with a side event dedicated to the role of open science and science communication in climate- and biodiversity-friendly policy.
Pensoft’s participation at COP29 – as well as our perspective on FAIR data and open science – were recently covered in an interview by Exposed by CMD (a US-based news media accredited to cover the event) with our science communicator Alexandra Korcheva and project manager Boris Barov.
You see, A LOT of great things worth celebrating happened during the year for us at Pensoft: all thanks to ceaselessly flourishing collaboration based on transparency, trust and integrity. Huge ‘THANK YOU!’ goes to everyone who has joined us in our endeavours!
Here’s to many more shared achievements coming up in 2025!
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In a new content syndication partnership, scholarly publisher and technology provider Pensoft has made scholarly articles from 16 journals discoverable from ScienceDirect.
In a new content syndication partnership, scholarly publisher and technology provider Pensoft has made scholarly articles from 16 journals discoverable from ScienceDirect.
Through this collaboration, content from 16 journals published by Pensoft will join 1.4 million open-access articles currently available from ScienceDirect. This way, they will reach even more people: researchers will find relevant academic papers more efficiently, while study authors will get increased visibility of their work, ultimately benefiting the scholarly community and facilitating knowledge exchange. According to the latest data, ScienceDirect is being visited by 20 million researchers each month.
Serving as a hub for scientific research, ScienceDirect offers access to scholarly content from thousands of journals. Making millions of research articles available to its users, it makes it easy to explore and access the latest research findings across a wide thematic range.
The move reaffirms Pensoft’s longstanding commitment to advancing open-access publishing and making high-quality academic research accessible to all.
“We at Pensoft are happy to share that content from our journals is now available to ScienceDirect users. Our mission as a publisher has always been to make sure scientific outputs reach as many people as possible, and we are really excited about making this extra step towards global visibility, discoverability, reusability and citability,” said Pensoft’s founder and CEO, Lyubomir Penev.
Rose L’Huillier, SVP Researcher Products, Data Science, and Analytics, Elsevier, said: “We are excited about our new partnership with Pensoft. This is a win-win. This collaboration aims to provide Pensoft’s published authors with enhanced visibility as their articles will now be discoverable by over 19 million scientists on ScienceDirect. We also hope that continuing to partner with other publishers will allow us to learn together how we can continue to improve the research publishing ecosystem as a whole and promote the values we all share such as safeguarding trust in science.”
Below you can find a list of the 16 participating journals published by Pensoft and/or using Pensoft’s scholarly publishing platform ARPHA:
ScienceDirect is an essential information resource for over 19,000,000 scientists worldwide, and home to many respected journals and prestigious society titles. Researchers can now search and browse articles from participating publishers, alongside Elsevier content on ScienceDirect. This collaboration brings together partner publishers’ unique and high impact academic journals with ScienceDirect’s capabilities in research dissemination and advanced features for discoverability.
