Guest blog post by John Midgley and Burgert Muller
Despite centuries of study, our knowledge of the natural world is still woefully inadequate. This is especially true for inaccessible regions, but these regions often hold interesting species of communities to study. The best studied country in the Afrotropics is South Africa, but nearby countries have received much less attention.
Malaise trap over a stream at Sehlabathebe National Park.
The Kingdom of Lesotho is nestled within the borders of South Africa and this landlocked country shares many ecological similarities with its neighbour. However, Lesotho has an average altitude that is 900 m higher, leading to differences in its fauna and flora, especially in its alpine areas, as these are much more extensive than in South Africa.
View south-east from Moteng Pass in northern Lesotho.
While the insects of South Africa are well studied, in particular the True flies (Diptera), Lesotho remains largely undersampled for flies, and that in combination with its unique habitat has created an opportunity to contribute to the country’s biodiversity knowledge.
Malaise trap at Roma Trading post lodge. Even though the area is a modified garden site, Lesotho lacks basic biodiversity data and species were collected for the first time from Lesotho.
With discovery on their minds, Dipterists from four institutions (KwaZulu-Natal Museum, National Museum, Albany Museum and Royal Museum for Central Africa) planned to undertake several fieldtrips to Lesotho. The aim was not to just increase the holdings of the institutions, as this would be short-sighted. Instead, the goal was to promote conservation and to improve on the current knowledge on the Diptera of Lesotho. The rest is natural history, and the special collection on the Diptera of Lesotho in African Invertebrateswas born.
Pristine grassland at Sehlabathebe National Park. Large parts of Lesotho are modified by agriculture, but in remote areas pristine sites remain.
Even areas that have received little attention are not complete blank slates, and a handful of expeditions to Lesotho were undertaken in the mid-20th Century, most notably by the Lund Zoological Institute, The KwaZulu-Natal Museum, The Durban Natural Science Museum and the Albany Museum, but large targeted and purposeful collections are not common. The specimens from these expeditions are housed at various international and local South African institutions, which do have some limited collections of Lesotho material.
Letšeng la Letsie is the largest alpine lake in Lesotho, but despite being a protected area is heavily influenced by grazing.
We added three further expeditions to this, in December 2021, November 2022 and January 2023, adding over 7000 specimens to the National Museum, Bloemfontein and KwaZulu-Natal Museum collections. The details of these specimens can be found in our recently published introduction to the Special Collection along with photographs of the collection sites from our expeditions.
Novel nanopublication workflows and templates for associations between organisms, taxa and their environment are the latest outcome of the collaboration between Knowledge Pixels and Pensoft.
Nanopublications complement human-created narratives of scientific knowledge with elementary, machine-actionable, simple and straightforward scientific statements that prompt sharing, finding, accessibility, citability and interoperability.
By making it easier to trace individual findings back to their origin and/or follow-up updates, nanopublications also help to better understand the provenance of scientific data.
With the nanopublication format and workflow, authors make sure that key scientific statements – the ones underpinning their research work – are efficiently communicated in both human-readable and machine-actionable mannerin line with FAIR principles. Thus, their contributions to science are better prepared for a reality driven by AI technology.
The machine-actionability of nanopublications is a standard due to each assertion comprising a subject, an object and a predicate (type of relation between the subject and the object), complemented by provenance, authorship and publication information. A unique feature here is that each of the elements is linked to an online resource, such as a controlled vocabulary, ontology or standards.
Now, what’s new?
As a result of the partnership between high-tech startup Knowledge Pixels and open-access scholarly publisher and technology provider Pensoft, authors in Biodiversity Data Journal (BDJ) can make use of three types of nanopublications:
Nanopublications associated with a manuscript submitted to BDJ. This workflow lets authors add a Nanopublications section within their manuscript while preparing their submission in the ARPHA Writing Tool (AWT). Basically, authors ‘highlight’ and ‘export’ key points from their papers as nanopublications to further ensure the FAIRness of the most important findings from their publications.
Standalone nanopublication related to any scientific publication, regardless of its author or source. This can be done via the Nanopublications page accessible from the BDJ website. The main advantage of standalone nanopublication is that straightforward scientific statements become available and FAIR early on, and remain ready to be added to a future scholarly paper.
Nanopublications as annotations to existing scientific publications. This feature is available from several journals published on the ARPHA Platform, including BDJ. By attaching an annotation to the entire paper (via the Nanopublication tab) or a text selection (by first adding an inline comment, then exporting it as a nanopublication), a reader can evaluate and record an opinion about any article using a simple template based on the Citation Typing Ontology (CiTO).
Nanopublications for biodiversity data?
At Biodiversity Data Journal (BDJ), authors can now incorporate nanopublications within their manuscripts to future-proofthe most important assertions on biological taxa and organisms or statements about associations of taxa or organisms and their environments.
On top of being shared and archived by means of a traditional research publication in an open-access peer-reviewed journal, scientific statements using the nanopublication format will also remain ‘at the fingertips’ of automated tools that may be the next to come looking for this information, while mining the Web.
Using the nanopublication workflows and templates available at BDJ, biodiversity researchers can share assertions, such as:
So far, the available biodiversity nanopublication templates cover a range of associations, including those between taxa and individual organisms, as well as between those and their environments and nucleotide sequences.
Nanopublication template customised for biodiversity research publications available from Nanodash.
As a result, those easy-to-digest ‘pixels of knowledge’ can capture and disseminate information about single observations, as well as higher taxonomic ranks.
The novel domain-specific publication format was launched as part of thecollaboration betweenKnowledge Pixels – an innovative startup tech company aiming to revolutionise scientific publishing and knowledge sharing and the open-access scholarly publisherPensoft.
Basically, a nanopublication – unlike a research article – is a tiny snippet of a precise and structured scientific finding (e.g. medication X treats disease Y), which exists as a reusable and cite-able pieces of a growing knowledge graph stored on a decentralised server network in a format that it is readable for humans, but also “understandable” and actionable for computers and their algorithms.
These semantic statements expressed in community-agreed terms, openly available through links to controlled vocabularies, ontologies and standards, are not only freely accessible to everyone in both human-readable and machine-actionable formats, but also easy-to-digest for computer algorithms and AI-powered assistants.
In short, nanopublications allow us to browse and aggregate such findings as part of a complex scientific knowledge graph. Therefore, nanopublications bring us one step closer to the next revolution in scientific publishing, which started with the emergence and increasing adoption of knowledge graphs.
“As pioneers in the semantic open access scientific publishing field for over a decade now, we at Pensoft are deeply engaged with making research work actually available at anyone’s fingertips. What once started as breaking down paywalls to research articles and adding the right hyperlinks in the right places, is time to be built upon,”
By letting computer algorithms access published research findings in a structured format, nanopublications allow for the knowledge snippets that they are intended to communicate to be fully understandable and actionable. With nanopublications, each of those fragmentsof scientific information is interconnected and traceable back to its author(s) and scientific evidence.
A nanopublication is a tiny snippet of a precise and structured scientific finding (e.g. medication X treats disease Y), which exists within a growing knowledge graph stored on a decentralised server network in a format that it is readable for humans, but also “understandable” and actionable for computers and their algorithms. Illustration by Knowledge Pixels.
By building on shared knowledge representation models, these data become Interoperable (as in the Iin FAIR), so that they can be delivered to the right user, at the right time, in the right place , ready to be reused (as per the R in FAIR) in new contexts.
Another issue nanopublications are designed to address is research scrutiny. Today, scientific publications are produced at an unprecedented rate that is unlikely to cease in the years to come, as scholarship embraces the dissemination of early research outputs, including preprints, accepted manuscripts and non-conventional papers.
A network of interlinked nanopublications could also provide a valuable forum for scientists to test, compare, complement and build on each other’s results and approaches to a common scientific problem, while retaining the record of their cooperation each step along the way.
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We encourage you to try the nanopublications workflow yourself when submitting your next biodiversity paper to Biodiversity Data Journal.
Community feedback on this pilot project and suggestions for additional biodiversity-related nanopublication templates are very welcome!
On the journal website: https://bdj.pensoft.net/, you can find more about the unique features and workflows provided by the Biodiversity Data Journal (BDJ), including innovative research paper formats (e.g. Data Paper, OMICS Data Paper, Software Description, R Package, Species Conservation Profiles, Alien Species Profile), expert-provided data audit for each data paper submission, automated data export and more.
Don’t forget to also sign up for the BDJ newsletter via the Email alert form on the journal’s homepage and follow it on Twitter and Facebook.
Earlier this year, Knowledge Pixels and Pensoft presented several routes for readers and researchers to contribute to research outputs – either produced by themselves or by others – through nanopublications generated through and visualised in Pensoft’s cross-disciplinary Research Ideas and Outcomes (RIO) journal, which uses the same nanopublication workflows.
Readers at some of the journals published by Pensoft, who have downloaded/printed a publication or ordered a physical copy of a journal issue over the last few weeks, might be in for a surprise concerning the layout of the PDF format of the articles.
Research papers published in ZooKeys demonstrating the former (left) and the current (right) article layout seen in the PDF format.
Even though it’s been years since online publishing has become the norm in how we are consuming information – including scientific publications – we understand that academia is still very much fond of traditional, often paper-based, article layout format: the one you use when accessing a PDF file or a print copy, rather than directly scrolling down through the HTML version of the article.
Even if today large orders of printed volumes from overseas are the exception, rather than the rule, we know we have readers of ours who regularly print manuscripts at home or savе them on their devices. Trends like this have already led to many journals first abandoning the physical- for digital-first, then transitioning to digital-only publication format.
Meanwhile, it is true that needs and demands have fundamentally changed in recent times.
As we speak, readers are accessing PDF files from much higher-quality desktops, in order to skim through as much content as possible.
In the meantime, authors are relying on greater-quality cameras to document their discoveries, while using advanced computational tools capable of generating and analysing extra layers of precise data. While producing more exhaustive research, however, it is also of key importance that their manuscripts are processed and published as rapidly as possible.
So, let’s run through the updates and give you our reasoning for their added value to readers and authors.
Revised opening page
One of the major changes is the one to the format of the first page. By leaving some blank space on the left, we found a dedicated place for important article metadata, i.e. academic editor, date of manuscript submission / acceptance / publication, citation details and licence. As a result, we “cleaned up” the upper part of the page, so that it can better highlight the authors and their affiliations.
Bottom line: The new layout provides a better structure to the opening page to let readers find key article metadata at a glance.
Expand as much – or as little – as comfortable
As you might know, journals published by Pensoft have been coming in different formats and sizes. Now, we have introduced the standard A4 page size, where the text is laid in a single column that has been slightly indented to the right, as seen above. Whenever a figure or a table is used in a manuscript, however, it is expanded onto the whole width of the page.
Before giving our reasons why, let’s see what were the specific problems that we address.
Case study 1
Some of our signature journals, including ZooKeys, PhytoKeys and MycoKeys, have become quite recognisable with their smaller-than-average B5 format, widely appreciated by people who would often be seen carrying around a copy during a conference or an international flight.
However, in recent times, authors began to embrace good practices in research like open sharing of data and code, which resulted in larger and more complex tables. Similarly, their pocket-sized cameras would capture much higher-resolution photos capable of revealing otherwise minute morphological characters. Smaller page size would also mean that often there would be pages between an in-text reference of a figure or a table and the visual itself.
So, here we faced an obvious question: shall we deprive their readers from all those detailed insights into the published studies?
Yet, the A4 format brought up another issue: the lines were too long for the eye comfort of their readers.
What they did was organise their pages into two-column format. While this sounds like a good and quite obvious decision, the format – best known from print newspapers – is pretty inconvenient when accessed digitally. Since the readers would like to zoom in on the PDF page or simply access the article on mobile, they will need to scroll up and down several times per page.
In addition, the production of a two-column text is technologically more challenging, which results in extra production time.
Bottom line: The new layout allows journals to not sacrifice image quality for text readability and vice versa. As a bonus, authors enjoy faster publication for their papers.
Simplified font
If you have a closer look at the PDF file, you would notice that print-ready papers have also switched to a more simplistic – yet easier to the eye – font. Again, the update corresponds to today’s digital-native user behaviour, where readers often access PDF files from devices of various resolutions and skim through the text, as opposed to studying its content in detail.
In fact, the change is hardly new, since the same font has long been utilised for the webpages (HTML format) of the publications across all journals.
Bottom line: The slightly rounder and simplified font prompts readability, thereby allowing for faster and increased consumption of content.
What’s the catch? How about characters and APCs?
While we have been receiving a lot of positive feedback from editors, authors and readers, there has been a concern that the updates would increase the publication charges, wherever these are estimated based on page numbers.
Having calculated the lines and characters in the new layout format, we would like to assure you that there is no increase in the numbers of characters or words between the former and current layout formats. In fact, due to the additional number of lines fitting in an A4 page as opposed to B5, authors might be even up for a deal.
________
* At the time of the writing, the new paper layout has not been rolled out at all journals published by Pensoft. However, most of the editorial boards have already confirmed they would like to incorporate the update.
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For news from & about Pensoft and our journal portfolio, follow us on Twitter, Facebook and Linkedin.
The latest issue published in African Invertebrates is a special one: it honours the career and achievements of South African entomologist Dr Jason G. H. Londt. In celebration of Londt’s prolific and inspiring work, the issue was published to coincide with his 80th birthday in 2023.
For more than 50 years, Londt has made a notable impact on South African and international entomology, collecting large numbers of Diptera and other insect orders. He has made outstanding contributions to the entomological research on flies, especially assassin or robber flies (Diptera, Asilidae), on hangingflies (Mecoptera, Bittacidae), and field collections of insects, primarily in South Africa.
Throughout his career, he has described more species of Afrotropical Asilidae and Bittacidae (Mecoptera) than any other author.
“Today, some 952 Asilidae species are recognised from southern Africa and thanks to Jason’s exceptional collecting efforts and detailed revisionary taxonomic publications these species can be easily identified,“ write African Invertebrates editors John Midgley and Torsten Dikow in the editorial to the Festschrift.
The Festschrift includes nine articles celebrating Dr Londt’s career by authors from three continents, covering the broad contributions that he has made to Afrotropical entomology. It also introduces five new species described in his honour, one hangingfly and four true flies.
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For updates about African Invertebrates and its latest publications, follow the journal on Twitter and Facebook. You can also sign up for the journal’s newsletter from the Email alert panel accessible from the homepage.
All journals published by Pensoft – each using the publisher’s self-developed ARPHA Platform – provide extensive and transparent information about their costs and services in line with the Plan S principles.
In support of transparency and openness in scholarly publishing and academia, the scientific publisher and technology provider Pensoft joined the Journal Comparison Service (JCS) initiative by cOAlition S, an alliance of national funders and charitable bodies working to increase the volume of free-to-read research.
As a result, all journals published by Pensoft – each using the publisher’s self-developed ARPHA Platform – provide extensive and transparent information about their costs and services in line with the Plan S principles.
The JCS was launched to aid libraries and library consortia – the ones negotiating and participating in Open Access agreements with publishers – by providing them with everything they need to know in order to determine whether the prices charged by a certain journal are fair and corresponding to the quality of the service.
According to cOAlition S, an increasing number of libraries and library consortia from Europe, Africa, North America, and Australia have registered with the JCS over the past year since the launch of the portal in September 2021.
While access to the JCS is only open to librarians, individual researchers may also make use of the data provided by the participating publishers and their journals.
This is possible through an integration with the Journal Checker Tool, where researchers can simply enter the name of the journal of interest, their funder and affiliation (if applicable) to check whether the scholarly outlet complies with the Open Access policy of the author’s funder. A full list of all academic titles that provide data to the JCS is also publicly available. By being on the list means a journal and its publisher do not only support cOAlition S, but they also demonstrate that they stand for openness and transparency in scholarly publishing.
“We are delighted that Pensoft, along with a number of other publishers, have shared their price and service data through the Journal Comparison Service. Not only are such publishers demonstrating their commitment to open business models and cultures but are also helping to build understanding and trust within the research community.”
said Robert Kiley, Head of Strategy at cOAlition S.
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About cOAlition S:
On 4 September 2018, a group of national research funding organisations, with the support of the European Commission and the European Research Council (ERC), announced the launch of cOAlition S, an initiative to make full and immediate Open Access to research publications a reality. It is built around Plan S, which consists of one target and 10 principles. Read more on the cOAlition S website.
About Plan S:
Plan S is an initiative for Open Access publishing that was launched in September 2018. The plan is supported by cOAlition S, an international consortium of research funding and performing organisations. Plan S requires that, from 2021, scientific publications that result from research funded by public grants must be published in compliant Open Access journals or platforms. Read more on the cOAlition S website.
Which one is the species that springs to mind when you think about the most awesome discoveries in recent times?
In an age where we more than ever need to appreciate and preserve the magnificent biodiversity inhabiting the Earth, we decided to go for a lighter and fun take on the work of taxonomists that often goes unnoticed by the public.
From the ocean depths surrounding Indonesia to the foliage of the native forests of Príncipe Island and into the soils of Borneo, we started with 16 species described as new to science in journals published by Pensoft over the years.
Out of these most amazing creatures, over the past several weeks we sought to find who’s got the greatest fandom by holding a poll on Twitter (you can follow it further down here or via #NewSpeciesShowdown).
Grand Finale – here comes the champion!
Truly, we couldn’t have a more epic final!
The two competitors come from two kingdoms, two opposite sides of the globe, and the “pages” of two journals, namely PhytoKeys and Evolutionary Systematics.
While we need to admit that we ourselves expected to crown an animal as the crowd-favourite, we take the opportunity to congratulate the botanists amongst our fans for the well-deserved win of Nepenthes pudica (see the species description)!
Find more about the curious one-of-a-kind pitcher plant in this blog post, where we announced its discovery following the new species description in PhytoKeys in June 2022:
Back then, N. pudica gave a good sign about its worldwide web appeal, when it broke the all-time record for online popularity in a competition with all plant species described in PhytoKeys over the journal’s 22-year history of taxonomic papers comrpising over 200 issues.
What’s perhaps even more curious, is that there is only one species EVER described in a Pensoft-published journal that has so far triggered more tweets than the pitcher plant, and that species is the animal that has ended up in second place in the New Species Showdown: a tiny amphibian living in Peru, commonly known as the the Amazon Tapir Frog (Synapturanus danta).Which brings us once again to the influence of botanists in taxonomic research.
Read more about its discovery in the blog post from February 2022:
Another thing that struck us during the tournament was that there was only one species described in our flagship journal in systematic journal ZooKeys: the supergiant isopod Bathynomus raksasa, that managed to fight its way to the semi-finals, where it lost against S. danta.
This makes us especially proud with our diverse and competitive journal portfolio full of titles dedicated to biodiversity and taxonomic research!
The rules
Twice a week, @Pensoft would announce a match between two competing species on Twitter using the hashtag #NewSpeciesShowdown, where everyone could vote in the poll for their favourie.
Disclaimer
This competition is for entertainment purposes only. As it was tremendously tough to narrow the list down to only sixteen species, we admit that we left out a lot of spectacular creatures.
To ensure fairness and transparency, we made the selection based on the yearly Altmetric data, which covers articles in our journals published from 2010 onwards and ranks the publications according to their online mentions from across the Web, including news media, blogs and social networks.
We did our best to diversify the list as much as possible in terms of taxonomic groups. However, due to the visual-centric nature of social media, we gave preference to immediately attractive species.
The first tie of the New Species Showdown was between the olinguito: Bassaricyon neblina (see species description) and the “snow-coated” tussock moth Ivela yini (see species description).
In the second battle, we faced two marine species discovered in the Indian Ocean and described in ZooKeys. The supergiant isopod B. raksasa (see species description) won against the Rose Fariy Wrasse C. finifenmaa (see species description) with strong 75%.
✨Tapir “chocolate” frog S. danta claims the #NewSpeciesShowdown victory against the transparent Glass frog H. yaku by 73%! 🙌Congrats to all who voted for the tiny but very pretty frog which was described only this year in @EvolSystematics! pic.twitter.com/kAFrmepyJa
In the third battle, we faced two frog species: the tapir ‘chocolate’ frog described in Evolutionary Systematics (see species description) winning against the ‘glass frog’ described in Zookeys (see species description) with 73%.
With 62% of the votes, the two-species tournament saw the Harryplax severus crab grab the win against another species named after a great wizard from the Harry Potter universe: the Salazar’s pit viper, which was described in the journal Zoosystematics and Evolution in 2020. The “unusual” crustacean was described back in 2017 in ZooKeys. As its species characters matched no genus known to date, the species also established the Harryplax genus.
Earlier this year, the 1st #plant to grow underground pitcher was described in @PhytoKeys & quickly became the most tweeted paper EVER published in our #botany#journal! So, it isn't too hard to see how it won with 68% against the Demon's orchid in this #NewSpeciesShowdown!🔝 1/3 pic.twitter.com/toC6epfVus
With the fifth battle in the New Species Showdown taking us to the Kingdom of Plants, we enjoyed a great battle between the first pitcher plant found to grow its pitchers underground to dine (see the full study) and the Demon’s orchid, described in 2016 from a single population spread across a dwarf montane forest in southern Colombia (read the study). Both species made the headlines across the news media around the world following their descriptions in our flagship botany journal PhytoKeys.
Next, we saw the primitive dipluran Haplocampa wagnelli (read its species description in Subterranean Biology) – a likely survivor of the Ice Age thanks to the caves of Canada – win the public in a duel against Xuedytes bellus (described in ZooKeys in 2017), also known as the Most cave-adapted trechine beetle in the world!
We had a close battle between the Principe Scops-owl Otus bikegila (see species description published in our ZooKeys earlier in 2022) and the blue-tailed Monitor lizard Varanus semotus (also first ‘known’ from the pages of ZooKeys, 2016). Being adorable species, but also ‘castaways’ on isolated islands in the Atlantic, they made great sensations upon their discovery.In fact, the reptile won with a single vote!
In the last battle of Round 1, the ‘horned’ tarantula C. attonitifer claimed the victory with a strong (80%) advantage from its competitor with a rebel name: the freshwater crayfish C. snowden (species description in ZooKeys from 2015). Described in African Invertebrates in 2019, the arachnid might be one amongst many ‘horned’ baboon spiders, yet there was something quite extraordinary about its odd protuberance. Furthermore, it came to demonstrate how little we know about the fauna of Angola: a largely underexplored country located at the intersection of several ecoregions.
In the first quarter-final round, in the close battle, the isopod ’emerged’ from the ocean depths of Indonesia B. raksasa (species description in Zookeys from 2020) claimed the victory with just a few votes difference (58%!) from its competitor: lovely olinguito B. neblina, also described in Zookeys but back in 2013.
After a challenging round, the ‘chocolate’ Tapir #frog S. danta (discovery published in @EvolSystematics) makes it to the semi-final leaving its competitor #crab Harryplax severus behind!
In the second round of the quarter-final, the tapir ‘chocolate’ frog S. danta (described in Evolutionary Systematics this year) claimed the victory with a significant advantage (69%) over its competitor crab H. severus described in Zookeys in 2017.
The third battle in Round 2 secured a place at the semi-finals for the only plant to get this far in the New Species Showdown. If you are dedicated to the mission of proving the plant kingdom superior: keep supporting Nepenthes pudica in the semi-finals and beyond! In the meantime, read the full description of the species, published in our PhytoKeys in June.
The last quarter-final send the Angolan ‘horned’ tarantula to the next round. Described in African Invertebrates in 2019, its discovery would have likely remained a secret had it not been for the local tribes who provided the research team with crucial information about the curious arachnid.
Curiously enough, by winning against the ‘supergiant’ isopod B. raksasa – also known around the Internet as the ‘Darth Vader of the seas’ – the Amazonian anuran S. danta outcompetes the last species in the New Species Showdown representing our flagship taxonomy journal: ZooKeys.
In a dramatic turn of events, the tight match between the Angolan tarantula C. attonitifer , whose ‘horn’ protruding from its back surprised the scientists because of its unique structure and soft texture, and the first pitcher plant whose ‘traps’ can be found underground in Borneo, ended up with the news that the New Species Showdown will be concluding with a battle between the kingdoms Animalia and Plantae! What a denouement!
If you have gone to the Pensoft website at any point in 2022, visited our booth at a conference, or received a newsletter from any of our journals, by this time, you must be well aware that in 2022 – more precisely, on 25 December – we turned 30. And we weren’t afraid to show it!
Pensoft’s team happy to showcase the 30-year story of the company at various events this year. Left: Maria Kolesnikova at the annual Biodiversity Information Standards (TDWG 2022) conference, hosted by Pensoft in Sofia, Bulgaria. Right: Iva Boyadzhieva at the XXVI International Congress of Entomology (ICE 2022) in Helsinki, Finland.
Indeed, 30 is not that big of a number, as many of us adult humans can confirm. Yet, we take pride in reminiscing about what we’ve done over the last three decades.
The truth is, 30 years ago, we wouldn’t have been able to picture this day, let alone think that we’d be sharing it with all of you: our journal readers, authors, editors and reviewers, collaborators in innovation, project partners, and advisors.
Long story short, we wanted to do something special and fun to wrap up our anniversary year. While we have been active in various areas, including development of publishing technology concerning open and FAIR access and linkage for research outcomes and underlying data; and multiple EU-supported scientific projects, we have always been associated with our biodiversity journal portfolio.
Besides, who doesn’t like to learn about the latest curious creature that has evaded scientific discovery throughout human history up until our days? 😉
By the time authors – who have acknowledged third-party financial support in their research papers submitted to a journal using the Pensoft-developed publishing platform: ARPHA – open their inboxes to the congratulatory message that their work has just been published and made available to the wide world, a similar notification will have also reached their research funder.
This automated workflow is already in effect at all journals (co-)published by Pensoft and those published under their own imprint on the ARPHA Platform, as a result of the new partnership with the OA Switchboard: a community-driven initiative with the mission to serve as a central information exchange hub between stakeholders about open access publications, while making things simpler for everyone involved.
All the submitting author needs to do to ensure that their research funder receives a notification about the publication is to select the supporting agency or the scientific project (e.g. a project supported by Horizon Europe) in the manuscript submission form, using a handy drop-down menu. In either case, the message will be sent to the funding body as soon as the paper is published in the respective journal.
“At Pensoft, we are delighted to announce our integration with the OA Switchboard, as this workflow is yet another excellent practice in scholarly publishing that supports transparency in research. Needless to say, funding and financing are cornerstones in scientific work and scholarship, so it is equally important to ensure funding bodies are provided with full, prompt and convenient reports about their own input.”
comments Prof Lyubomir Penev, CEO and founder of Pensoft and ARPHA.
“Research funders are one of the three key stakeholder groups in OA Switchboard and are represented in our founding partners. They seek support in demonstrating the extent and impact of their research funding and delivering on their commitment to OA. It is great to see Pensoft has started their integration with OA Switchboard with a focus on this specific group, fulfilling an important need,”
adds Yvonne Campfens, Executive Director of the OA Switchboard.
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About the OA Switchboard:
A global not-for-profit and independent intermediary established in 2020, the OA Switchboard provides a central hub for research funders, institutions and publishers to exchange OA-related publication-level information. Connecting parties and systems, and streamlining communication and the neutral exchange of metadata, the OA Switchboard provides direct, indirect and community benefits: simplicity and transparency, collaboration and interoperability, and efficiency and cost-effectiveness.
About Pensoft:
Pensoft is an independent academic publishing company, well known worldwide for its novel cutting-edge publishing tools, workflows and methods for text and data publishing of journals, books and conference materials.
All journals (co-)published by Pensoft are hosted on Pensoft’s full-featured ARPHA Publishing Platform and published in a way that ensures their content is as FAIR as possible, meaning that it is effortlessly readable, discoverable, harvestable, citable and reusable by both humans and machines.
African Invertebrates invites any submissions linked to Jason, new species descriptions, revisions of taxa he has worked on, or any work based on specimens he collected.
From 1976 to 1994, Jason Londt was Assistant Director at the Natal Museum (now KwaZulu-Natal Museum) in South Africa, publisher of the African Invertebratesjournal. Then, he became Director before retiring in 2003.
During his career at the Museum and well after that, Jason described more than 570 species and 46 genera of insects from the Afrotropics. While the majority of his work was on the robber fly family (Asilidae), Jason also worked on hangingflies (Bittacidae) and ticks. He was also a prolific collector of many other insects, still kept in the collection of the KwaZulu-Natal Museum.
Dr Jason Gilbert Hayden Londt
Jason’s fieldwork was extensively targeting the diverse habitats in South Africa: from the subtropical coast of KwaZulu-Natal, the grasslands in the Midlands around Pietermaritzburg – where the museum is based – and further north in the Highveld, to the higher elevations of the Drakensberg Mountains bordering Lesotho, and from the Succulent and Nama Karoo, to the diverse Fynbos habitats along the south-western coast of South Africa. Additional major fieldwork took place in Namibia, Kenya, Malawi, and to a lesser extent: Eswatini (Swaziland) and Cote d’Ivoire. In addition to utilising the collected material for taxonomic work, Jason also used his field trips to publish behavioural observations and prey selection of Asilidae species.
To celebrate Jason’s career achievements and his 80th birthday, African Invertebrates will be publishing a Festschrift in his honour in April 2023. We invite any submissions linked to Jason, new species descriptions, revisions of taxa he has worked on, or any work based on specimens collected by Jason.
A new to science species of tarantula with a peculiar horn-like protuberance sticking out of its back was recently identified from Angola, a largely underexplored country located at the intersection of several Afrotropical ecoregions.
Collected as part of the National Geographic Okavango Wilderness Project, which aims to uncover the undersampled biodiversity in the entire Okavango catchment of Angola, Namibia and Botswana, thereby paving the way for sustainable conservation in the area, the new arachnid is described in a paper published in the open-access journal African Invertebrates by the team of Drs John Midgley and Ian Engelbrecht.
Although the new spider (Ceratogyrus attonitifer sp.n.) belongs to a group known as horned baboon spiders, the peculiar protuberance is not present in all of these species. Moreover, in the other species – where it is – the structure is completely sclerotised, whereas the Angolan specimens demonstrate a soft and characteristically longer ‘horn’. The function of the curious structure remains unknown.
The new tarantula’s extraordinary morphology has also prompted its species name: C. attonitifer, which is derived from the Latin root attonit– (“astonishment” or “fascination”), and the suffix –fer (“bearer of” or “carrier”). It refers to the astonishment of the authors upon the discovery of the remarkable species.
“No other spider in the world possesses a similar foveal protuberance,” comment the authors of the paper.
Individual of the newly described species in defensive posture in its natural habitat. Photo by Kostadine Luchansky.
During a series of surveys between 2015 and 2016, the researchers collected several female specimens from the miombo forests of central Angola. To find them, the team would normally spend the day locating burrows, often hidden among grass tufts, but sometimes found in open sand, and excavate specimens during the night. Interestingly, whenever the researchers placed an object in the burrow, the spiders were quick and eager to attack it.
The indigenous people in the region provided additional information about the biology and lifestyle of the baboon spider. While undescribed and unknown to the experts until very recently, the arachnid has long been going by the name “chandachuly” among the local tribes. Thanks to their reports, information about the animal’s behaviour could also be noted. The tarantula tends to prey on insects and the females can be seen enlarging already existing burrows rather than digging their own. Also, the venom of the newly described species is said to not be dangerous to humans, even though there have been some fatalities caused by infected bites gone untreated due to poor medical access.
In conclusion, the researchers note that the discovery of the novel baboon spider from Angola does not only extend substantially the known distributional range of the genus, but can also serve as further evidence of the hugely unreported endemic fauna of the country:
“The general paucity of biodiversity data for Angola is clearly illustrated by this example with theraphosid spiders, highlighting the importance of collecting specimens in biodiversity frontiers.”
Apart from the described species, the survey produced specimens of two other potentially new to science species and range expansions for other genera. However, the available material is so far insufficient to formally diagnose and describe them.
The newly described baboon spider species (Ceratogyrus attonitifer), showing the peculiar soft and elongated horn-like protuberance sticking out of its back. Photo by Dr Ian Enelbrecht.
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Original source:
Midgley JM, Engelbrecht I (2019) New collection records for Theraphosidae (Araneae, Mygalomorphae) in Angola, with the description of a remarkable new species of Ceratogyrus. African Invertebrates 60(1): 1-13. https://doi.org/10.3897/afrinvertebr.60.32141
Species that live exclusively in a single region are at a particular risk of extinction. However, for them to be protected, thorough assessments of the environmental impacts need to be performed.
There are more than 100 earthworm species living in the soil and dead wood of KwaZulu-Natal Province, South Africa. Most of them live exclusively in small regions in the province, which makes them extremely vulnerable.
To scientists Dr Adrian J. Armstrong, Ezemvelo KZN Wildlife, and Ms Thembeka Nxele, KwaZulu-Natal Museum, the problem is twofold. Firstly, they note that the expression “out of sight, out of mind” is very suitable for the case of the endemic earthworms in South Africa. Secondly, they point out that the lack of common names for these species is a stumbling block that hinders their inclusion in conservation assessments.
As a result, the researchers try to rectify this situation by assigning standardised English names to the endemic earthworms in KwaZulu-Natal. Their article is published in the open access journal African Invertebrates.
Scientific names are often intractable to non-specialists, and the lack of common names leaves environmental assessors in the dark when they need to figure out which earthworms may occur at a development site. In the meantime, it has been found that about 50% of the native vegetation in KwaZulu-Natal has already been removed as a result of infrastructure construction and the figure is rising.
“The indigenous earthworms generally don’t survive in developed areas,” say the authors.
For instance, the informal use of an English name (green giant wrinkled earthworm) for the species Microchaetus papillatus, has facilitated the inclusion of this species in environmental impact assessments in KwaZulu-Natal.
While the green giant wrinkled earthworm does occur in a relatively large and rapidly developing area in KwaZulu-Natal, other species live in smaller areas that have been urbanised even more.
The extinction of these earthworms is not only undesirable from the point of view of biodiversity advocates – the role of this group of soil organisms is impossible to replace fully with non-native earthworms. For example, some of the large indigenous earthworms (more than 1 m in length) burrow much deeper than the non-native species, thereby enriching and aerating the soil at greater depth.
The authors are hopeful that by giving the indigenous earthworms in KwaZulu-Natal common names, the threatened and endemic species will be conserved through inclusion in environmental impact assessments. Furthermore, they believe that earthworms could draw attention to the areas where they occur whenever a choice for new protected areas is to be made.
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Original source:
Armstrong AJ, Nxele TC (2017) English names of the megadrile earthworms (Oligochaeta) of KwaZulu-Natal. African Invertebrates 58(2): 11-20. https://doi.org/10.3897/AfrInvertebr.58.13226
