The new Horizon project is to assist the transition of agriculture to a positive force for biodiversity, crop pollination services, ecosystems and people. Pensoft will lead the communication, dissemination, exploitation and synergies with other projects.
Threats to pollinators and pollination services that support agriculture and provide benefits to people are a worldwide problem, recognized by intergovernmental scientific assessments, national or transnational initiatives as well as policies.
Intensive agriculture is among the principal threats to pollinator biodiversity and the crop pollination services that pollinators provide. Moreover, typically crop breeding has tended to overlook the benefits of pollination for sustained crop yields in favour of other crop traits.
Coordinated by Dr. Adam Vanbergen (INRAE) and funded by Horizon Europe, the AGRI4POL project takes an ambitious and achievable interdisciplinary and transdisciplinary approach to achieve a transition towards sustainable pollinator-friendly farming.
The project aims to deliver an integrated state-of-the-art analysis of the crop – farming system – pollinator interplay across levels of biological organisation from the crop gene to the agroecosystem.
AGRI4POL launched in February 2025 and will be running until the end of 2028.
To achieve its goals, AGRI4POL project has outlined six objectives:
Establish and work with a multi-actor community to drive the transition towards more pollinator friendly farming systems and value chains.
Evaluate genetic diversity of crop floral traits governing pollinator interactionsto stimulate breeding of pollinator-smart varieties.
Find out how pollinator-crop relationships are modified by intra- and interspecific crop diversification in space and time.
Optimise ecological infrastructures (EI = landscape features, non-crop habitats) for crop pollination, pollinator biodiversity and multiple ecosystem benefits.
Assess the social, economic and environmental opportunities and obstacles presented by pollinator friendly farming options to understand their feasibility and acceptability.
Evaluate the influence of the policy landscape and the practitioner awareness of the benefits and challenges of pollinator-friendly farming at [sub]national, European and international scales.
AGRI4POL’s coordinator Dr. Adam Vanbergen (INRAE) gave an introductory presentation during the project kick-off meeting in Brussels (February 2025, Belgium).
Pensoft’s role
Building on its experience in communication, dissemination, and exploitation of results, Pensoft will focus on maximizing the project’s impact and long-term legacy. This encompasses a wide array of activities, ranging all the way from building a project’s visual identity and online presence and creating a podcast to translating results into policy recommendations. Moreover, Pensoft will be facilitating collaboration opportunities with other projects, leveraging on its involvement in numerous EU-funded projects. As of now, Pensoft takes part in six EU Pollinator projects, which serves well to facilitate synergies.
International consortium
The AGRI4POL consortium comprises partners from fourteen European institutions along with five associated partners, including China. Consortium covers a wide diverse range of scientific disciplines spanning from pollinator ecology and agriculture to stakeholder engagement and communications.
The Chinese muntjac(Muntiacus reevesi)is an invasive alien species for Europe with established populations across the western part of the continent. Photo by Mario Shimbov (Pensoft).
As one of the partners in charge of maximising the project’s impact, Pensoft will work on OneSTOP’s visual branding, communication, dissemination and exploitation, and the development of a data management plan for the project.
Invasive alien species (IAS) pose one of the most significant threats to global biodiversity, contributing to species extinctions, ecosystem degradation, and economic losses exceeding $400 billion annually.
To tackle this, the EU enforces Regulation (EU) 1143/2014 and the Biodiversity Strategy for 2030, aiming to prevent IAS introduction, enhance early detection, and manage their spread. Member States coordinate efforts with scientific support and citizen engagement to minimise their impact and protect Europe’s biodiversity. Addressing this urgent challenge, the EU Horizon project OneSTOP has officially launched as part of a coordinated European effort to combat biological invasions in terrestrial environments.
Comprehensive Approach to Tackling Invasive Alien Species
OneSTOP is one of two ambitious projects funded under the Horizon Europe programme, the other being GuardIAS, which focuses on marine and freshwater habitats. The two collaborative initiatives held their joint official kick-off meeting in January at the Joint Research Centre in Ispra, Italy. Together, these projects aim to develop innovative solutions for detecting, preventing, and managing invasive alien species across all ecosystem realms.
The ОneSTOP project consortium at the project’s kick-off meeting held on 20-24 January 2025 in Ispra, Italy.
The project is structured around four key objectives:
Improve species detection and response time by incorporating computer vision, environmental DNA (eDNA) analysis and citizen science initiatives.
Facilitate swift action against invasive species threats by openly sharing data in international standards for biodiversity data with stakeholders who need it.
Support policy-makers in making informed decisions about where and how to allocate resources for invasive species management by developing data-driven systems.
Ensure stakeholder collaboration and knowledge exchange by implementing Living Labs at the regional level and an international policy forum, thereby encouraging socio-political action.
OneSTOP aligns with the European Alien Species Information Network (EASIN) mission to protect EU biodiversity by improving IAS management through advanced biosecurity technologies and enhanced data integration. By fostering collaboration with the Joint Research Centre (JRC) and supporting Member States with innovative tools, the project strengthens the EU’s capacity to detect, respond to, and mitigate IAS threats in line with existing regulations.
Pensoft’s role in OneSTOP
As the leader of Work Package 1, Pensoft is responsible for shaping OneSTOP’s visual identity and developing a comprehensive strategy for communication, dissemination, and impact. This includes crafting a data and knowledge management plan to ensure the project’s findings are effectively shared and utilised. By fostering collaboration with key biosecurity networks, these efforts will strengthen OneSTOP’s long-term influence.
A key part of this work is to raise awareness about invasive alien species (IAS) and their pathways, ensuring that policymakers, researchers, and the public understand their impact and the importance of prevention. Pensoft will contribute to translating complex scientific findings into accessible content—including infographics, policy briefs, and interactive visualisations—to engage policymakers, researchers, and the public. These efforts will ensure that IAS knowledge is effectively shared, fostering collaboration and informed decision-making across sectors. Knowledge transfer materials will be shared through various channels, including OneSTOP’s five Living Labs across Europe, where stakeholders will be actively engaged in outreach and citizen science initiatives.
Pensoft will play a vital role in strengthening public awareness, fostering engagement, and promoting effective strategies for monitoring and managing IAS.
International Consortium
The project brings together twenty international partners from fifteen countries operating in various sectors, ultimately contributing with diverse expertise:
For more information visit the OneSTOP project website, and make sure to follow the project’s progress via our social media channels on BlueSky and LinkedIn.
Large-scale ground-mounted solar parks are relatively new phenomena. Over time, ideas have been put forward about how they can accommodate biodiversity, and some parks are indeed becoming more multifunctional, for example by providing habitats for plants, invertebrates and birds. From a background of studying idyllic ecosystems in dynamic change, Dr. Markus Zaplata, research technician at Anhalt University of Applied Sciences, Germany, has come to appreciate the biology of solar parks, and has found evidence that they can support a wide range of biodiversity.
Biodiversity in solar parks is a given (here two Mantis religiosa nymphs) and, with the possible exception of self-seeded woody plants, is desirable. Photo by Dr Markus Zaplata
His research, published in the open-access journal One Ecosystem, proves the previously overlooked fact that vegetation succession also takes place in solar parks, and that certain intrinsic technical structures can even help self-seeded woody plants live there. Vegetation succession refers to the directional development from easily spreading but low-competitive species such as herbs and grasses towards highly competitive species such as woody plants. Mowing alone is not enough to deal with woody plants, he argues. “The fact is that subsurface woody structures continue to grow after mowing, and may at some point massively interfere with the solar installations”, he says.
With 18 years of experience in studying vegetation succession, Dr. Zaplata has supported a research project on biodiversity in solar parks since 2021.
“I do the mowing myself, so I experience the very things I write about in this paper”, he says.
Mowing can also be expensive and labour-intensive, he adds, suggesting that other construction methods and grazing could provide a more sustainable alternative.
Including insights from succession research can make global solar energy landscapes more sustainable, he argues. “The universal and unstoppable ecological process of succession is here linked to a management recommendation that can bring society closer again, on the new or neutral territory of new energy landscapes. In fact, new and old professions are connected, for example solar park manager and livestock farmer.”
Above-ground parts of a willow tree (Salix sp.) that have resisted a recent mowing campaign. Photo by Dr Markus Zaplata
“Finally, and very importantly, my article points out that experts with in-depth predictive knowledge of dynamic vegetation processes must be consulted in the future on everything that has to do with the technical transformation of landscape units, including solar parks,” he says in conclusion.
Original source
Zaplata M (2025) Management and sustainability of ground-mounted solar parks requires consideration of vegetation succession as an omnipresent process. One Ecosystem 10: e141583. https://doi.org/10.3897/oneeco.10.e141583
A recent study published in the open-access journal African Invertebrates provides insights into the life history and behaviour of the endemic Cape autumn widow butterfly (Dira clytus), a species endemic to South Africa.
In the study, Silvia Mecenero of the Lepidopterists’ Society of Africa and Stephen Kirkman of Nelson Mandela University examine the species’ developmental stages and responses to environmental conditions, with implications for conservation efforts.
By rearing the subspecies Dira clytus clytus in controlled conditions, the researchers documented the butterfly’s complete life cycle, from egg to adult.
Photographs of the life stages of Diraclytusclytusa adult b eggs c, d newly hatched larva e first instar larva (three days old) f first instar larva preparing to moult (nine days old) g, h second instar larva i third instar larva j fourth instar larva k, l fifth instar larva m fifth instar larvae huddling together in a big group n pre-pupal form o, p pupa.
Two distinct pupation and adult emergence phases were identified over a period of a few months, influenced by cold temperatures, suggesting that environmental cues play a role in triggering these developmental events. The fact that two broods were found in a matter of months is interesting, because in the wild this species breeds only once a year.
The findings indicate that Dira clytus clytus could show some phenological plasticity in its response to climate change, by changing its timing of pupation and the number of broods within a year.
Such flexibility may not always be beneficial to butterflies, as shifts in phenology could lead to mismatches with the availability of their host plants. However, Dira clytus clytus is a generalist that feeds on a variety of grasses and may therefore be more adaptable to changes in its phenology.
The study was published as part of a commemorative collection of articles published in honour of the late ecologist Prof. Stefan H. Foord.
Original study
Mecenero S, Kirkman SP (2025) Life history and behavioural observations during the rearing of Dira clytus clytus (Linnaeus, 1764) (Insecta, Lepidoptera, Nymphalidae), with notes on implications for climate change adaptation. African Invertebrates 66(1): 65-72. https://doi.org/10.3897/AfrInvertebr.66.138082
Teodor Metodiev, senior communications officer at Pensoft at the opening of “The pollinators we can’t live without” temporary exhibition at the National Museum of Natural History at the Bulgarian Academy of Sciences (Sofia, Bulgaria, 2023).
With more than three decades of experience in the domain of science communication, Pensoft has a rich perspective on what it takes to bring science into the spotlight. A testament to this is its growing projects department, where the public face of some of Europe’s most innovative research undertakings is being moulded by a cohort of experts.
Among their ranks is Teodor Metodiev, a communicator with years of experience when it comes to bridging the gap between the scientific and the public. He recently sat down for an interview to share his observations on the significance, challenges and lessons of the job.
Read below to find out how effective engagement can make today’s research tomorrow’s reality.
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Why is science communication important and how can it influence the scope and impact of today’s research?
I believe science communication is fundamental because it eliminates the gap between researchers and users of their work, be they policymakers, practitioners or other stakeholders. By combining novel and traditional communication methods, scientific knowledge, results and data are much more likely to be shared, understood, and applied. If not communicated effectively, scientific results and advances have no real impact and are simply lost in an avalanche of emerging new information.
What are the most common challenges you encounter as a science communicator?
There are many diverse challenges one could encounter as a science communicator! I believe the most common one is the overall complexity of science, which is sometimes very difficult to communicate in a clear, visually appealing way. For me personally, one of the greater challenges is to delve into controversial topics such as climate change, vaccines, or genetic engineering, where emotions and ideologies may run high.
How can complex technical concepts be made accessible to non-science stakeholders and the general public?
Making complex concepts accessible to the general public is among the main responsibilities of a science communicator. There are many different approaches to do that, but it ultimately depends on the audience you want to engage – for example, you would not necessarily want to interact with a farmer through policy briefs. In general, I would list three main ‘pillars’ that can be considered when dealing with complex scientific information:
Simplify the language and avoid scientific jargon (i.e. by using short sentences with a clear structure)
Always leverage visual aids, such as infographics, animations, videos or graphical abstracts
Try to present the information in a narrative-like form – start with the background and problem, and then explain the solutions you are offering.
By adhering to these simple steps, I believe most challenging scientific concepts can be easily translated into an understandable format for laypersons or other stakeholder groups!
Which indicators do you consider crucial when assessing the success of a science communication campaign?
In my view, the success of any science communication campaign should be measured beyond quantitative indicators. Sure, audience reach, number of impressions and demographic data are important, but real success should be assessed through active engagement (i.e. comments or questions towards the topic, participation in events or activities, feedback and criticism from evaluation surveys, etc). I believe that monitoring these qualitative indicators on an ongoing basis is instrumental for a long-term awareness and understanding of a given topic over time.
What has made Pensoft unique and effective in the field of science communication?
I honestly believe the driving force behind Pensoft’s success in science communication is the motivated team behind it – it has demonstrated that an openness to engage, combined with an urge to learn and expand your horizons, is ultimately the making of a successful science communicator. In addition to being curious and forthcoming, an environmental conscience is another fundamental characteristic of Pensoft which surely resonates with all of its members!
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Explore past and present research projects in Pensoft’s communication portfolio.
Boris Barov, Project Manager at Pensoft, talked about open-science publishing and science communication as a stepping stone towards the fulfilment of biodiversity targets.
This participation came about as a result of the collaboration within a network of European organisations from the domains of biodiversity, ecology and engineering.
The organisations at the core of the network held a workshop on the combined role of science and technology in achieving the Sustainable Development Goals (SDGs). More precisely, the Kunmig-Montreal Global Biodiversity Framework (KM GBF) was selected as a testbed, whose stipulations can guide innovation across sectors and disciplines on the road to the realisation of specific SDGs.
The day-long programme featured 30 presentations that covered a variety of themes related to research priorities and technological instruments servicing the KM GBF. Experts and stakeholders at the political, academic and professional level were involved in the proceedings, solidifying the network’s status as a hub for innovators in biodiversity conservation efforts.
Among the speakers was Boris Barov, Project Manager at Pensoft, who introduced the audience to the importance of open-science publishing and science communication as a stepping stone towards the fulfilment of biodiversity targets.
Barov elaborated on the key tenets and approaches ensuring that publishers like Pensoft are actively contributing to the preservation of the biosphere on a global level.
Those include:
disseminating conservation-centric research that uncovers findings and innovations critical to the effective implementation of the KM-GBF
supporting open access and knowledge sharing that guarantee the free availability of research outputs to any and all parties that need it
fostering an interface between science and policy that allows vital expertise to reach and inform decision-makers
championing inclusivity and equality that give indigenous communities a seat at the table
Additionally, Barov singled out Pensoft’s participation in the EU-funded research projects CO-OP4CBD, BioAgora and TRANSPATH as a testament to effective science communication that empowers stakeholder collaboration and engagement at the science-policy interface.
It is the intention of the network of organisations to collect the stakeholder input submitted during the event in a future whitepaper designed to outline its approach to facilitating biodiversity governance through research and technology.
Moreover, this is meant to be followed by an open call rallying international support for the integration of biodiversity conservation priorities into the post-SDG agenda of the UN.
Read more about the Horizon Europe-funded CO-OP4CBD & BioAgora projects and Pensoft’s involvement on our blog. You can also follow updates from CO-OP4CBD on BluesSky, X and Linkedin. BioAgora is also on X and Linkedin.
In 2023, Pensoft also joined TRANSPATH as an expert in science communication, dissemination and exploitation. Find more on our blog and follow the Horizon Europe project on X and Linkedin.
Collisions between animals and vehicles are a threat to conservation efforts and human safety, and have a massive cost for transport infrastructure managers and users.
Using the opportunities offered by the increasing number of sensors embedded into transport infrastructures and the development of their digital twins, a French research team has developed a method aiming at managing animal-vehicle collisions. The goal is to map the collision risk between trains and ungulates (roe deer and wild boar) by deploying a camera trap network.
Roe deer crossing a railway, photographed by a field sensor and automatically identified with artificial intelligence. Image credit: TerrOïko
The proposed method starts by simulating the most probable movements of animals within and around an infrastructure using an ecological modelling software. This allows the assessment of where they are most likely to cross.
After identifying these collision hotspots, ecological modelling is used again to assist with the design of photo sensor deployment in the field. Various deployment scenarios are modelled to find the one whose predicted results are most consistent with the initial simulation.
Example of a map showing the estimated relative abundance of a species along a railway section. The higher the abundance, the higher the collision risk. Image credit: TerrOïko
Once sensors are deployed, the data collected (in this case, photos) are processed through artificial intelligence (deep learning) to detect and identify species at the infrastructure’s vicinity.
Finally, the processed data are fed into an abundance model, which is another type of ecological model. It is used to estimate the probable density of animals in every part of a studied area using data collected at only a few points in that area. The result is a map showing the relative abundance of species and, therefore, the collision risk along an infrastructure.
This method was implemented on an actual section of railway in south-western France, but it can be applied to any type of transport infrastructure. It may be implemented not only on existing infrastructures but also during the conception phase of new ones (as part of the environmental impact assessment strategy).
Such a method paves the way for the integration of biodiversity-oriented monitoring systems into transport infrastructures and their digital twins. As sensors collect data continuously, it could be improved in the future to provide real-time driver information and produce dynamic adaptive maps that could be ultimately sent to autonomous vehicles.
Original source
Moulherat S, Pautrel L, Debat G, Etienne M-P, Gendron L, Hautière N, Tarel J-P, Testud G, Gimenez O (2024) Biodiversity monitoring with intelligent sensors: An integrated pipeline for mitigating animal-vehicle collisions. In: Papp C-R, Seiler A, Bhardwaj M, François D, Dostál I (Eds) Connecting people, connecting landscapes. Nature Conservation 57: 103-124.https://doi.org/10.3897/natureconservation.57.108950
Yet another hectic year has passed for our team at Pensoft, so it feels right to look back at the highlights from the last 12 months, as we buckle up for the leaps and strides in 2025.
In the past, we have used the occasion to take you back to the best moments of our most popular journals (see this list of 2023 highlights from ZooKeys, MycoKeys, PhytoKeys and more!); share milestones related to our ARPHA publishing platform (see the new journals, integrations and features from 2023); or let you reminisce about the coolest research published across our journals during the year(check out our Top 10 new species from 2021).
In 2022, when we celebrated our 30th anniversary on the academic scene, we extended our festive spirit throughout the year as we dived deep into those fantastic three decades. We put up Pensoft’s timeline and finished the year with a New Species Showdown tournament, where our followers on (what was back then) Twitter voted twice a week for their favourite species EVER described on the pages of our taxonomic journals.
Spoiler alert: we will be releasing our 2024 Top 10 New Species on Monday, 23 December, so you’d better go to the right of this screen and subscribe to our blog!
As we realised we might’ve been a bit biased towards our publishing activities over the years, this time, hereby, we chose to present you a retrospection that captures our best 2024 moments from across the departments, and shed light on how the publishing, technology and project communication endeavours fit together to make Pensoft what it is.
In truth, we take pride in being an exponentially growing family of multiple departments that currently comprises over 60 full-time employees and about a dozen freelancers working from all corners of the world, including Australia, Canada, Belgium and the United Kingdom. Together, we are all determined to make sure we continuously improve our service to all who have trusted us: authors, reviewers, editors, client journals, learned societies, research institutions, project consortia and other external collaborators.
After all, great deeds are only possible when you team up with great like-minded people!
In 2024, at Pensoft, we were hugely pleased to see a significant growth in the published output at almost all our journals, including record-breaking numbers in both submissions and publications at flagship titles of ours, including the Biodiversity Data Journal, PhytoKeys and MycoKeys.
Later in 2024, our colleagues, who work together with our clients to ensure their journals comply with the requirements of the top scholarly databases before they apply for indexation, informed us that another two journals in our portfolio have had their applications to Clarivate’s Web of Science successfully accepted. These are the newest journal of the International Association of Vegetation Science: Vegetation and Classification, and Metabarcoding and Metagenomics: a journal we launched in 2017 in collaboration with a team of brilliant scientists working together at the time within the DNAquaNet COST Action.
In 2024, we also joined the celebrations of our long-time partners at the Museum für Naturkunde Berlin, whose three journals: Zoosystematics and Evolution, Deutsche Entomologische Zeitschrift and Fossil Record are all part of our journal portfolio. This year marked the 10th Open Access anniversary of the three journals.
In the meantime, we also registered a record in new titles either joining the Pensoft portfolio or opting for ARPHA Platform’s white-label publishing solution, where journal owners retain exclusivity for the publication of their titles, yet use ARPHA’s end-to-end technology and as many human-provided services as necessary.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev with Prof. Dr. Marc Stadler, Editor-in-Chief of IMA Fungus and President of the International Mycological Association at the Pensoft booth at the 12th International Mycological Congress (August, the Netherlands).
Amongst our new partners are the International Mycological Association who moved their official journal IMA Fungus to ARPHA Platform. As part of Pensoft’s scholarly portfolio, the renowned journal joins another well-known academic title in the field of mycology: MycoKeys, which was launched by Pensoft in 2011. The big announcement was aptly made public at this year’s 12th International Mycological Congress where visitors of the Pensoft stand could often spot newly elected IMA President and IMA Fungus Chief editor: Marc Stadler chatting with our founder and CEO Lyubomir Penev by the Pensoft/MycoKeys booth.
On our end, we did not stop supporting enthusiastic and proactive scientists in their attempt to bridge gaps in scientific knowledge. In January, we launched the Estuarine Management and Technologies journal together with Dr. Soufiane Haddout of the Ibn Tofail University, Morocco.
Later on, Dr. Franco Andreone (Museo Regionale di Scienze Naturali, Italy) sought us with the idea to launch a journal addressing the role of natural history museums and herbaria collections in scientific progress. This collaboration resulted in the Natural History Collections and Museomics journal, officially announced at the joint TDWG-SPNHC conference in Okinawa, Japan in August.
Around this time, we finalised our similarly exciting journal project in partnership with Prof. Dr. Volker Grimm (UFZ, Germany), Prof. Dr. Karin Frank (UFZ, Germany), Prof. Dr. Mark E. Hauber (City University of New York) and Prof. Dr. Florian Jeltsch (University of Potsdam, Germany). The outcome of this collaboration is called Individual-based Ecology: a journal that aims to promote an individual-based perspective in ecology, as it closes the knowledge gap between individual-level responses and broader ecological patterns.
The three newly-launched journals are all published under the Diamond Open Access model, where neither access, nor publication is subject to charges.
As you can see, we have a lot to be proud of in terms of our journals. This is also why in 2024 our team took a record number of trips to attend major scientific events, where we got the chance to meet face-to-face with long-time editors, authors, reviewers and readers of our journals. Even more exciting was meeting the new faces of scientific research and learning about their own take on scholarship and academic journals.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev welcomed editors at PhytoKeys to the Pensoft-PhytoKeys-branded booth at the XX International Botanical Congress in July 2024 (Spain).
We cannot possibly comment on Pensoft’s tech progress in 2024 without mentioning the EU-funded project BiCIKL (acronym for Biodiversity Community Integrated Knowledge Library) that we coordinated for three years ending up last April.
This 36-month endeavour saw 14 member institutions and 15 research infrastructures representing diverse actors from the biodiversity data realm come together to improve bi-directional links between different platforms, standards, formats and scientific fields.
Following these three years of collaborative work, we reported a great many notable research outputs from our consortium (find about them in the open-science project collection in the Research Ideas and Outcomes journal, titled “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective”) that culminated in the Biodiversity Knowledge Hub: a one-stop portal that allows users to access FAIR and interlinked biodiversity data and services in a few clicks; and also a set of policy recommendations addressing key policy makers, research institutions and funders who deal with various types of data about the world’s biodiversity, and are thereby responsible to ensuring there findability, accessibility, interoperability and reusability (FAIR-ness).
Apart from coordinating BiCIKL, we also worked side-by-side with our partners to develop, refine and test each other’s tools and services, in order to make sure that they communicate efficiently with each other, thereby aligning with the principles of FAIR data and the needs of the scientific community in the long run.
During those three years we made a lot of refinements to our OpenBiodiv: a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System, and our ARPHA Writing Tool. The latter is an XML-based online authoring environment using a large set of pre-formatted templates, where manuscripts are collaboratively written, edited and submitted to participating journals published on ARPHA Platform. What makes the tool particularly special is its multiple features that streamline and FAIRify data publishing as part of a scientific publication, especially in the field of biodiversity knowledge. In fact, we made enough improvements to the ARPHA Writing Tool that we will be soon officially releasing its 2.0 version!
OpenBiodiv – The Open Biodiversity Knowledge Management System
ARPHA Writing Tool 2.0
Amongst our collaborative projects are the Nanopublications for Biodiversity workflow that we co-developed with KnowledgePixels to allow researchers to ‘fragment’ their most important scientific findings into machine-actionable and machine-interpretable statements. Being the smallest units of publishable information, these ‘pixels of knowledge’ present an assertion about anything that can be uniquely identified and attributed to its author and serve to communicate a single statement, its original source (provenance) and citation record (publication info).
Nanopublications for Biodiversity
In partnership with the Swiss-based Text Mining group of Patrick Ruch at SIB and the text- and data-mining association Plazi, we brought the SIB Literature Services (SIBiLS) database one step closer to solidifying its “Biodiversity PMC” portal and working title.
Understandably, we spent a lot of effort, time and enthusiasm in raising awareness about our most recent innovations, in addition to our long-standing workflows, formats and tools developed with the aim to facilitate open and efficient access to scientific data; and their integration into published scholarly work, as well as receiving well-deserved recognition for their collection.
We just can’t stress it enough how important and beneficial it is for everyone to have high-quality FAIR data, ideally made available within a formal scientific publication!
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
Pensoft’s CTO Teodor Georgiev talks about innovative methods and good practices in the publication of biodiversity data in scholarly papers at the First national meeting of the Bulgarian Barcode of Life (BgBOL) consortium (December, Bulgaria).
🤔What is a Data Paper?
👍 A means to describe a #dataset – like the ones on @GBIF – in a standardised, widely accepted #scientific article format.
👇🧵Highlights from @LyuboPenev's talk at the int'l symposium "#BiodiversityData in montane & arid Eurasia" in Kazakhstan 🇰🇿
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev presenting his “Data papers on biodiversity” talk at the “Biodiversity data in montane and arid Eurasia” symposium jointly organized by GBIF and by the Institute of Zoology of Republic of Kazakhstan (November, Kazakhstan).
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📸Today, at the @EASEeditors symposium, our @teodorpensoft gave a sneak peek into the AI-assisted tools at @ARPHAplatform we have been working on (e.g. Word -> JATS XML conversion) and the #ARPHA Writing Tool 2.0 (coming up in early 2025)!🎉
Pensoft’s CTO Teodor Georgiev presents new features and workflows currently in testing at the ARPHA Writing Tool 2.0 at the EASE Autumn Symposium 2024 (online event).Pensoft’s Head of Journal development, Marketing and PR Iva Boyadzhieva talks about Pensoft’s data publishing approach and innovations at the German Ecological Society 53rd Annual Conference (September, Germany).
Pensoft as a science communicator
At our Project team, which is undoubtedly the fastest developing department at Pensoft, science communicators are working closely with technology and publishing teams to help consortia bring their scientific results closer to policy actors, decision-makers and the society at large.
Ultimately, bridging the notorious chasm between researchers and global politics boils down to mutual understanding and dialogue.
Pensoft’s communication team attended COP16 (November 2024, Colombia) along with partners at the consortia of CO-OP4CBD, BioAgora and RESPIN: three Horizon Europe projects, whose communication and dissemination is led by Pensoft.
Throughout 2024, the team, comprising 20 science communicators and project managers, has been working as part of 27 EU-funded project consortia, including nine that have only started this year (check out all partnering projects on the Pensoft website, ordered from most recently started to oldest). Apart from communicating key outcomes and activities during the duration of the projects, at many of the projects, our team has also been actively involved in their grant proposal drafting, coordination, administration, platform development, graphic and web design and others (see all project services offered by Pensoft to consortia).
📸As leaders of the “Stakeholder engagement, comms & dissemination” WP at @BCubedProject, we joined the annual meeting to report on project branding, #scicomm & #DataManagement.
Naturally, we had a seat on the front row during many milestones achieved by our partners at all those 27 ongoing projects, and communicated to the public by our communicators.
Amongst those are the release of the InsectsCount web application developed within the Horizon 2020 project SHOWCASE. Through innovative gamification elements, the app encourages users to share valuable data about flower-visiting insects, which in turn help researchers gain new knowledge about the relationship between observed species and the region’s land use and management practices (learn more about InsectsCount on the SHOWCASE prroject website).
Another fantastic project output was the long-awaited dataset of maps of annual forest disturbances across 38 European countries derived from the Landsat satellite data archive published by the Horizon Europe project ForestPaths in April (find more about the European Forest Disturbance Atlas on the ForestPaths project website).
In a major company highlight, last month, our project team participated in COP29 in Baku, Azerbaijan with a side event dedicated to the role of open science and science communication in climate- and biodiversity-friendly policy.
Pensoft’s participation at COP29 – as well as our perspective on FAIR data and open science – were recently covered in an interview by Exposed by CMD (a US-based news media accredited to cover the event) with our science communicator Alexandra Korcheva and project manager Boris Barov.
You see, A LOT of great things worth celebrating happened during the year for us at Pensoft: all thanks to ceaselessly flourishing collaboration based on transparency, trust and integrity. Huge ‘THANK YOU!’ goes to everyone who has joined us in our endeavours!
Here’s to many more shared achievements coming up in 2025!
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The first national symposium on DNA barcoding took place on 5 December 2025 at the Headquarters of the Bulgarian Academy of Sciences, where it was attended by renowned Bulgarian scientists in the field, in addition to early-career researchers and PhD students representing different institutions.
The event saw a day-long series of lectures and a poster session, during which the participants had the opportunity to get acquainted with the work of their colleagues in various fields of biology.
Amongst the topics were the development of the Bulgarian molecular laboratory in Antarctica; the study of the invertebrate fauna currently underrepresented in DNA reference libraries; the return of the beaver to Bulgaria; and research on phytopathogenic fungi on agricultural crops.
During the coffee breaks sponsored by the National Museum of Natural History, the delegates had the chance to network and exchange experience between institutions and fields of expertise.
Teodor Georgiev, CTO at Pensoft held a presentation about the 2.0 version of the ARPHA Writing Tool. In its greatly improved version, it will feature many new, refined and elaborated workflows that help and simplify data publishing, discoverability, reusability and overall FAIRness.
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
The event was opened and closed by Prof. Dr. Lyubomir Penev, who was elected as the Chair of the Governing Board at the Bulgarian Barcode of Life last year. He is also the founder and CEO of Pensoft.
In his closing speech, Penev expressed his hopes for the development of BgBOL and confirmed the plans of the consortium to turn the symposium into an annual tradition. Congratulations were extended to BgBOL’s newest member: the Institute of Oceanology “Fridtjof Nansen” at BAS.
He also announced the launch of a new special collection in the Biodiversity Data Journal, which will welcome scientific papers related to the Bulgarian and Balkan biota and using DNA barcoding methods. The authors of the first five papers to be submitted and accepted at the collection will take advantage of free publication.
Finally, he thanked the hosts of the Bulgarian Academy of Sciences Headquarters: Stefania Kamenova and Assoc. Prof. Dr. Georgi Bonchev, who are also Vice-Chair and Chair of the Executive Board at BgBOL, respectively. A special thanks went also to Prof. Pavel Stoev, Director of the National Museum of Natural History.
Scholarly publisher and technology provider Pensoft has launchedIndividual-based Ecology (IBE), a new peer-reviewed, diamond open-access journal established to promote an individual-based perspective in ecology.
IBE aims to bridge the gap between individual-level responses and broader ecological patterns. In the face of global challenges, the journal is looking to contribute to both a better understanding and new sets of predictions of how ecological systems will respond to anthropogenic change. It aims to support the development of appropriate mitigation and restoration measures by focusing on the entities that actually and directly respond to change, i.e. individual organisms.
The journal embraces basic and applied, theoretical and empirical research in terrestrial and aquatic ecology. It welcomes contributions that incorporate data or novel insights about individual organisms and their interactions that are relevant to explaining system-level dynamics. IBE will publish a wide range of articles, including empirical, experimental, and modeling studies, as well as reviews, perspectives, and methodological papers.
As a diamond open-access journal, IBE is currently free to publish and free to read, ensuring that all published research is freely accessible to the global community.
The journal will utilise Pensoft’s innovative ARPHA platform, known for its robust support of academic publishing and efficient dissemination of research. Thanks to its fast-track publishing solution, the new journal offers a seamless, end-to-end publishing experience, encompassing all stages between manuscript submission and article publication, indexation, dissemination and permanent archiving. The publishing services provided by ARPHA also include a variety of human-provided services and integrations with third-party providers, intended to maximise the reach and usability of scholarly knowledge published in IBE.
A banner of IBE presented at the German Ecological Society’s 53rd annual conference (9-13 September 2024, Freising, Germany).
IBE will be led by four editors-in-chief: Prof. Dr. Volker Grimm and Prof. Dr. Karin Frank of Helmholtz Center for Environmental Research – UFZ, Prof. Dr. Mark E. Hauber of The City University of New York, and Prof. Dr. Florian Jeltsch of the University of Potsdam.
„We are excited to launch Individual-based Ecology, a new, promising journal that will contribute to a better understanding of ecological systems and how we interact with them,” said Prof Lyubomir Penev, founder and CEO of ARPHA and Pensoft.
“The time has come to establish individual-based ecology as an important complement to all other branches of ecology, both because we need it to fully understand and predict the response of ecological systems to change, and because empirical and modelling approaches have reached a level where the collection and use of individual-based data has become possible,” says Prof Volker Grimm, one of the editors-in-chief.
“It is exciting to be able to launch a journal that embraces ecological principles at the level of individuals across any and all lineages of life on our planet”, notes Prof. Mark E. Hauber, also an editor-in-chief.
“This new journal will promote nothing less than a paradigm shift in ecological thinking from averaging approaches to a science focused on the fundamental agents of change, i.e. individual organisms. Systematically recognising the importance of individual variation in ecological systems will transform our fundamental understanding of how biodiversity and its components emerge from individual responses and interactions, and how the emerging levels of organisation will respond to changing environments,” said Prof Florian Jeltsch from the editorial team.
IBE joins a number of open-access ecology journals published by Pensoft.
For more information on the journal’s focus and scope and guidelines to authors, visit IBE’s website and follow it on Facebook and X.
