Males of the species have a yellow head and forebody and light blue spots on the back and they live in low elevation forests of the Southern Western Ghats.
You’ve probably seen nature depicted in art, but how often do you see an artwork hiding in nature?
When they saw the back of a lizard in the Southern Western Ghats, a group of scientists from the Thackeray Wildlife Foundation in India were reminded of Van Gogh’s The Starry Night. As soon as they figured out it was a new species, it was only apt to name it in honour of the famous painter.
“Cnemaspis vangoghi is named for Dutch painter Vincent Van Gogh (1853–1890) as the striking colouration of the new species is reminiscent of one of his most iconic paintings, The Starry Night,” explains Ishan Agarwal, who took part in the study to describe the new lizard. Males of the species have a yellow head and forebody and light blue spots on the back and they live among rocks and occasionally buildings and trees.
Photo by Akshay Khandekar. License CC-BY 4.0
Together with his fellow researchers Akshay Khandekar and Tejas Thackeray, they found the new species during an expedition in April 2022 to the the Southern Western Ghats in Tamil Nadu, India. Now, they have published their findings in the peer-reviewed journal ZooKeys.
“Tamil Nadu is an exceptionally biodiverse state and we expect to name well over 50 new species of lizards by the time we are done [with our expeditions]!,” Ishan Agarwal says.
From left to right: Akshay Khandekar, Tejas Thackeray, Swapnil Pawar, Ishan Agarwal, Satpal Gangalmale, Vivek Waghe.
“I also had more than 500 tick bites during that summer trip, with the highest densities in the low-elevation, dry forests of Srivilliputhur, where the new species are found,” he adds.
Cnemaspis vangoghi is a small-sized gecko that can reach 3,4 cm in length. It was described as new to science together with another species of its genus, Cnemaspis sathuragiriensis, named for its type locality the Sathuragiri Hills.
Cnemaspis vangoghi and Cnemaspis sathuragiriensis. Photos by Akshay Khandekar. License CC-BY 4.0
“The two new species are distributed in low elevation (250–400 m asl.), deciduous forests of Srivilliputhur, and add to the five previously known endemic vertebrates from Srivilliputhur-Megamalai Tiger Reserve, Tamil Nadu, India,” Ishan Agarwal explains. They are diurnal and mainly active during the cool hours of the early morning and evening, found largely on rocks. So far, they have only been found in very restricted localities, “an interesting case of micro-endemism in low-elevation species,” he notes.
Research article:
Khandekar A, Thackeray T, Agarwal I (2024) Two new species of the Cnemaspis galaxia complex (Squamata, Gekkonidae) from the eastern slopes of the southern Western Ghats. ZooKeys 1196: 209-242. https://doi.org/10.3897/zookeys.1196.117947
Where would we be without taxonomists? We wouldn’t even want to imagine such a scenario, even though experts in taxonomy are declining at an alarming rate, just like some of the threatened species they describe.
This Taxonomist Appreciation Day is a great excuse to marvel at the amazing species that biodiversity specialists continue describing across the globe. The World Register of Marine Species does that by publishing a selection of the top 10 marine species published each year – we’re proud to share with you that two of 2023’s top marine species were first introduced to the scientific world on the pages of our journal ZooKeys!
The most spectacularly colored nemertean in the Caribbean, if not the world, it has a long, thin, thread-like body that can stretch much more than 200 mm long. Its head has a characteristic, narrow diamond or spearhead shape, vaguely reminiscent of a viper’s head.
Its name refers to the bright, colorful iridescent stripes and spots characterizing it. Bifrost, the rainbow bridge in the Norse mythology, reaches between Midgard, the human Earth, and Asgard, the realm of the gods. Some authors state that the name Bifrost means “shimmering path” or “the swaying road to heaven”, and that it might be inspired by the Milky Way.
This benthic marine worm usually lives in coral rubble, gravel, and shell hash. It can often be found stretched between nooks and crannies of the substratum.
Tetranemertes bifrost
Found near Bocas del Toro, Panamá, it is one of the first records of this genus in the Carribean sea.
In the 1970s, some 50 years before it was scientifically described, Smithsonian photographer Kjell Sandved took a picture of it draped over an unknown fan coral off Puerto Rico.
The second ZooKeys species featured in the selection is the whimsical Nautilus samoaensis.
Nautilus samoaensis
Nautiloids were in fact quite plentiful throughout the oceans at one point, based upon the fossil record. Today, they are represented by just a handful of species. Nautilus samoaensis and two other species got described as new to science in ZooKeys in early 2023, proving that Nautilus are more diverse than one could think.
Nautilus samoaensis has a beautiful shell; in fact, its shell color pattern is the most unique of all Nautilus species. It is composed of multiple, branching stripes that have a rearward projection after descending from the venter. No other known Nautilus species shows this color pattern. It lives near Pago Pago, American Samoa, where it has been found at depths between 200 and 400 m.
This marine species also ranked second in Pensoft’s Top 10 New Species selection for 2023.
Last year, we told you about the peculiarities of studying nautilus species, but these animals are actually under a serious threat from illegal fishing, as they are highly prized for their shells.
The Top 10 Marine Species is an initiative that brings awareness to the importance of the work of biodiversity scholars, so announcing it on Taxonomist Appreciation Day is only fitting; but it also highlights the need to better protect our oceans and the unique life that hides in there.
In 2023, the world of biodiversity saw some amazing discoveries . Our taxonomy journals published hundreds of new species, so selecting a Top Ten was tough, but here we go – get to know these beautiful new species, and maybe think about all the amazing diversity that still remains unexplored on our planet.
10. The walking leaf
It’s very often that undescribed species hide in plain sight for years, but it’s easy to understand why when they look like that! Leaf insects look confusingly similar to leaves – this sophisticated camouflage provides excellent protection from predators, but also presents a challenge to researchers.
“There are around 3,500 known species of stick and leaf insects and there are currently just over 100 described species of leaf insect,” researcher Dr Sven Bradler says. This is why when Phyllium ortizi and six other leaf insect species were found, it made for a really special discovery.
Lime-green in colour, Phyllium ortizi is so far only known from Mindanao Island, Philippines.
The Eastern Forest Hedgehog (Mesechinus orientalis) was discovered in southwestern China. It is a small-bodied hedgehog, smaller than most of the other species in its genus, its spines as short as 1.8-2 cm. It has a brown nose, with black whiskers that shorten towards the nose.
The species is currently known from southern Anhui and northwestern Zhejiang, where it lives in scrubland and subtropical broad-leaf evergreen forests at elevations from 30 to 700 m.
The researchers found out that genus Mesechinus, to which the new species belongs, dates back to the early Pleistocene and started appearing around 1.71 million years ago, while M. Orientalis diverged from its congeners some 1.1 million years ago.
Published in ZooKeys.
8. The bumpy salamander
Tylototriton zaimengwas found in the eponymous Zaimeng lake in Manipur, India. It is a medium-sized salamander has a massive wide head that could take up as much as a quarter of its total length. Its most distinctive feature are the knob-like warts along its body.
The salamander has an earthy-brown body with orange markings along its head and orange-brown warts down its back and sides. Its tail fades from brown at the base to yellow-orange at the tip.
#NewSpecies! New crocodile newt from India just snuck in:
An unexpected discovery, this new treefrog species was found in the Amazon lowlands of central Peru. The research team, led by Germán Chávez, was surprised that a new species could be hiding in plain sight in an otherwise well-explored part of the Amazon. No matter how many times they returned to the site, they only found two specimens, which made its scientific description challenging.
Its name, Scinax pyroinguinis, literally means “groins of fire”. It is a reference to the orange, flame-like pattern on the groins, thighs and shanks, but also to the wildfires in the area where it was found, which are a serious threat to its habitat.
Pinguicula ombrophila is part of the butterwort family, a group of insectivorous flowering plants consisting of around 115 species. Its leaves have a sticky texture, enabling it to capture and digest small insects.
For carnivorous plants, insects can be an additional source of nutrients to help them compensate the nutrient deficiency of the substrate they’re growing in. This gives them a competitive advantage over other plants and enables them to thrive in challenging habitats.
While the majority of butterworts are found in the northern hemisphere, this species was discovered in the elevated regions of southern Ecuador, near the Peru border. The research team found it on a nearly vertical rock face at 2,900 metres. Its name means “rain-loving butterwort”, highlighting the plant’s preference for very wet conditions.
Sinocyclocheilus longicornus(from the Latin words “longus”, meaning long, and “cornu”, meaning horn) comes from Southern China. It is only known from a dark vertical cave at an elevation of 2,276 m in the province of Guizhou. It is around 10-15 centimeters long and lacks pigmentation in its scales, which gives it it a ghostly whitish appearance. Since its eyes are small and probably not much help in a completely dark environment, it relies on barbels that look like tiny whiskers to feel its way around.
The researchers that found it are not quite sure what its “horn” is used for, but it might have something to do with navigating its way in the dark and dreary environment it inhabits.
Sinocyclocheilus longicornus is also featured in the SHOALS report on freshwater fish species described in 2023.
Sibon irmelindicaprioae was described as a new species together with four more tree-dwelling snake species from jungles of Ecuador, Colombia, and Panama. They all belong to Dipsadinae —a subfamily of snakes found in North and South America.
Also known as DiCaprio’s snail-eating snake, this species was named after actor and film producer Leonardo DiCaprio’s mother, Irmelin DiCaprio. The actor himself chose the name to honour his mother and raise awareness about the threats these snakes face.
Its habitat in Panama is affected by large-scale copper mining. The open-pit mines, some of them visible from space, make the areas uninhabitable for snail-eating snakes.
“These new species of snake are just the tip of the iceberg in terms of new species discoveries in this region, but if illegal mining continues at this rate, there may not be an opportunity to make any future discoveries,” says Alejandro Arteaga, who led the study to describe them.
Published in ZooKeys.
3. The Tolkien frog
You probably guessed it by now – this stream frog from the Ecuadorian Andes was named after J.R.R. Tolkien, the author of The Hobbit and The Lord of the Rings.
At about 66 millimeters (2.5 inches) long, Hyloscirtus tolkieniis tiny enough to fit in the palm of your hand, but that doesn’t stop it from being simply stunning. With pale pink eyes and gold-speckled toes, it looks like it came straight out of Middle-earth. It was found at an elevation of 3190 meters in Río Negro-Sopladora National Park, a protected area of páramo and cloud forests.
I'm at a nerd convention today so here's the nerdiest frog I could find. Frog of the day is Hyloscirtus tolkieni, named for J. R. R. Tolkien. Photo is from the paper describing its recent discovery! https://t.co/DsQmzm7Np2pic.twitter.com/fpKBST6Uux
— LadyLasergun | Teatuber (@LadyLasergun) August 3, 2023
“The new species of frog has amazing colours, and it would seem that it lives in a universe of fantasies, like those created by Tolkien. The truth is that the tropical Andes are magical ecosystems where some of the most wonderful species of flora, funga, and fauna in the world are present. Unfortunately, few areas are well protected from the negative impacts caused by humans. Deforestation, unsustainable agricultural expansion, mining, invasive species, and climate changes are seriously affecting Andean biodiversity”, said Diego F. Cisneros-Heredia, one of the researchers behind this discovery.
Published in ZooKeys.
2. The enigmatic Nautilus
2023 was a great year for nautilus biodiversity: three species were described as new to science, including Nautilus samoaensis, which you see here. Like its name tells you, it was found off the coast of American Samoa.
Studying nautilus diversity is no easy feat – with setting spiky traps, hauling them over on board, and, eventually, burping nautiluses, it is surely a memorable experience.
Judging by the fossil record, nautiloids were once quite plentiful throughout the oceans. Today, however, they are represented by just a handful of species.
In addition, these fragile animals remain threatened by wildlife trade as they are hunted for their shells, which according to Mongabay can sell for up to about $1,000 each on the black market.
Found in Thailand’s Phang-Nga province, Chilobrachys natanicharum features an enchanting phenomenon: a neon blue-purple coloration that gives it a unique look.
There is no blue pigment in this tarantula’s body: the secret behind its striking color comes from the unique structure of its hair, which incorporates nanostructures that manipulate light in an effect that creates the blue appearance. Depending on the light, it can also appear violet.
Before it was described as a new species, Chilobrachys natanicharum was actually known to experts from the commercial tarantula trade market as “Chilobrachys sp. Electric Blue Tarantula,” but this is the first time that it’s discovered in its natural habitat.
Its name, in fact, resulted from an auction campaign, the proceeds from the auction have been channeled to bolster the education of Lahu children in Thailand and to aid impoverished cancer patients.
The city of Cambridge and the Wellcome Campus hosted the Final General Assembly of the EU-funded project BiCIKL (acronym for Biodiversity Community Integrated Knowledge Library): a 36-month endeavour that saw 14 member institutions and 15 research infrastructures representing diverse actors from the biodiversity data realm come together to improve bi-directional links between different platforms, standards, formats and scientific fields. Consortium members who could not attend the meeting in Cambridge joined the meeting remotely.
After a welcome cocktail reception on Monday evening at Hilton Cambridge City Centre, on Tuesday, the consortium made an early start with a recap of BiCIKL’s key milestones and outputs from the last three years. All Work Package leaders had their own timeslot to discuss the results of their collaborations.
They all agreed that the Biodiversity Knowledge Hub – the one-stop portal for understanding the complex – yet increasingly interconnected landscape of biodiversity research infrastructures – is likely the flagship outcome of BiCIKL.
Prof. Lyubomir Penev, project coordinator of BiCIKL and founder/CEO of Pensoft Publishers at the BiCIKL’s third and final General Assembly in Cambridge, United Kingdom.
In the afternoon, the participants focused on the services developed under BiCIKL. Amongst the many services resulting from the project some were not originally planned. Rather those were the ‘natural’ products of the dialogue and collaboration that flourished within the consortium throughout the project. “A symptom of passion,” said Prof. Lyubomir Penev, project coordinator of BiCIKL and founder/CEO of Pensoft Publishers.
An excellent example of one such service is what the partners call the “Biodiversity PMC”, which brings together biodiversity literature from thousands of scholarly journals and over 500,000 taxonomic treatments, in addition to the biomedical content available from NIH’s PubMed Central, into the SIB Literature Services (SIBiLS) database. What’s more, users at SIBiLS – be it human or AI – can now use advanced text- and data-mining tools, including AI-powered factoid question-answering capacities, to query all this full-text indexed content and seek out, for example, species traits and biotic interactions. Read more about the “Biodiversity PMC” in its recent official announcement.
Far from being the only one, the “Biodiversity PMC” is in good company: from the blockchain-based technology of LifeBlock to the curation of the DNA sequences by PlutoF, the BiCIKL project consortium takes pride in having developed twelve services dedicated to FAIR and linked ready-to-use biodiversity data.
On Wednesday, the consortium focused on BiCIKL’s activities from the Transnational and Virtual Access Pillar, which included both presentations by each open call leader and VA leader, as well as open discussions and a recap of what the teams have learnt from these experiences.
A panel discussion took place on Thursday as part of an open event, where BiCIKL partners and ELIXIR Biodiversity and Plant Communities came together to discuss the Future of Biodiversity and Genomics data integration at the EMBL Wellcome Genome Campus.
Thursday was dedicated to an open event where BiCIKL partners and ELIXIR Biodiversity and Plant Communities came together to discuss the Future of Biodiversity and Genomics data integration at the EMBL Wellcome Genome Campus. You can find the agenda on BiCIKL’s website.
After 36 months of action, the BiCIKL project will officially end in April 2024, but does it mean that all will be done and dusted come May 2024? Certainly not, point out the partners.
To ensure that the Biodiversity Knowledge Hub will not only continue to exist but will not cease to grow in both use and participation, the one-stop portal will remain under the maintenance of LifeWatch ERIC.
In conclusion, we could say that an appropriate payoff for the project is “Stick together!” as put by BiCIKL’s Joint Research Activity Leader Dr. Quentin Groom.
Final words at the third and last General Assembly of the BiCIKL project.
You can find highlights from the BiCIKL General Assembly meeting on X via the #BiCIKL_H2020 hashtag (in association with #Cambridge and #finalGA)
All research outputs, including the approved grant proposal, policy briefs, guidelines papers and research articles associated with the project, remain openly accessible from the BiCIKL project outcomes collection in RIO Journal: https://doi.org/10.3897/rio.coll.105.
Until recently, Orthacanthus gracilis could have been considered the “John Smith” of prehistoric shark names, given how common it was.
Three different species of sharks from the late Paleozoic Era – about 310 million years ago – were mistakenly given that same name, causing lots of grief to paleontologists who studied and wrote about the sharks through the years and had trouble keeping them apart.
But now Loren Babcock, a professor of earth sciences at The Ohio State University, has finished the arduous task of renaming two of the three sharks – and in the process rediscovered a wealth of fossil fishes that had been stored at an Ohio State museum for years but had been largely forgotten.
Loren Babcock with a collection of Orton Museum’s fossil fishes, including several from John Newberry. Photo by The Ohio State University
In order to change the names, Babcock had to go through a process governed by the International Commission on Zoological Nomenclature (ICZN). He had to document the need to change the names, propose new names and submit them to an ICZN-recognized journal for peer review and then have the ICZN officially accept the names.
Tooth of the shark Orthacanthus lintonensis. The tooth is about 13 mm long.
“It was one of the most complex naming problems we have had in paleontology, which is probably one reason no one attempted to fix it until now,” Babcock said.
“A lot of scientists in the field have written, thanking me for doing this. We are all happy it is finally done,” he said.
One measure of the impact the renaming has had on the field: Babcock’s paper announcing the new names was just published in the journal ZooKeys on Jan. 8, but it has already been referenced on seven different Wikipedia pages.
The original Orthacanthus gracilis fossil was found in Germany and named in 1848. That species gets to keep the name.
The remaining two fossils were found in Ohio and named by the famous American paleontologist John Strong Newberry in 1857 and 1875.
Portrait of John Strong Newberry
Babcock renamed the Ohio sharks Orthacanthus lintonensis and Orthacanthus adamas, both based on the name of the place where they were originally found.
Why did Newberry give the two Ohio sharks the same name?
“He probably just forgot. It was nearly 20 years between the time the two species were named,” Babcock said.
And as far as giving it the same name as a German species: “In those days, it was really difficult to search for names that were already in existence – they did not have the internet.”
The sharks themselves were fascinating creatures, Babcock said. They were large and creepy, nearly 10 feet long, and looked more like eels than present-day sharks, with long dorsal fins extending the length of their backs and a peculiar spine extending backward from their heads.
They lived in the fresh or brackish water of what are known as “coal swamps” of the late Carboniferous Period (323-299 million years ago) during the late Paleozoic Era. They belong to an extinct group of chondrichthyans (which includes sharks, skates and rays) called the xenacanthiforms.
Dorsal spine of Orthacanthus adamas. The spine is about 71 mm long.
Newberry was for a time the chief geologist at the Geological Survey of Ohio. He played an important role in the early growth of what is now the Orton Geological Museum at Ohio State.
Babcock, who is the current director of the Orton Museum, decided to begin the renaming process after reviewing the museum’s collection. He was surprised to see how many fossils the museum had that had been collected by Newberry, including the two prehistoric sharks.
Through the years, scientists have written about how various Newberry specimens had been lost. It turns out many had been at the Orton Museum.
“No museum has a larger collection of Newberry’s fossils except for the American Museum of Natural History in New York City,” Babcock said.
“Not a lot of people are aware of that – I did not even know the extent of our collection. If you’re looking for part of the Newberry collection and can’t find it in the American Museum of Natural History, it is probably going to be here.”
Research article:
Babcock LE (2024) Replacement names for two species of Orthacanthus Agassiz, 1843 (Chondrichthyes, Xenacanthiformes), and discussion of Giebelodus Whitley, 1940, replacement name for Chilodus Giebel, 1848 (Chondrichthyes, Xenacanthiformes), preoccupied by Chilodus Müller & Troschel, 1844 (Actinopterygii, Characiformes). ZooKeys 1188: 219-226. https://doi.org/10.3897/zookeys.1188.108571
News piece originally published by the Ohio State University. Republished with permission.
There are about 25,000 islands in the Pacific Ocean. The most remote of them are in North and East Polynesia, the Hawaiian Islands, and French Polynesia. Biologists have been attracted to these regions since the 18th century, but French Polynesia has received much less attention compared to the Hawaiian Islands.
A view of the area where Olpium caputi was found. Photo by Frédéric A. Jacq
Contributions to our knowledge of the pseudoscorpions of French Polynesia date from the 1930s and are associated with the Pacific Entomological Survey. Since then, the French Polynesian pseudoscorpion fauna has consisted of only four known species.
A female individual of Olpium caputi.
Thanks to international cooperation, a team of enthusiastic scientists has published the first discovery of a new species of pseudoscorpion from French Polynesia. Between 2017 and 2020, they studied French Polynesia’s fauna and environment for the French Polynesian Agricultural Service and as a part of a large-scale survey of arthropods. During their research work, they collected a few pseudoscorpion specimens on Huahine and Tahiti in the Society Islands.
Among them is a new species named Olpium caputi, collected by sieving moss at 1,450 m about sea level on the Mont Marau Summit, Tahiti, one of the Society Islands archipelago. Its scientific name honours Zuzana Čaputová, the President of Slovakia.
“As a female leader, she takes a strong stance and supports women and scientists. Even in the 21st century, women in science or top positions are rare. The rarity of the research in French Polynesia, the uniqueness of the discovery, and the fact that the new species is a female, led us to name it after this inspiring woman who can be a role model of courage and perseverance for many women,” says Jana Christophoryová, who led the study.
The paper is published in the open-access, peer-reviewed journal ZooKeys.
The team:
Katarína Krajčovičová of Bratislavské regionálne ochranárske združenie – BROZ, Bratislava, and Jana Christophoryová of Comenius University, Bratislava, are both zoologists, who specialize in the taxonomy, distribution, and ecology of pseudoscorpions. Frédéric Jacq, botanist, and Thibault Ramage, entomologist, are independent naturalists who have been working on improving the faunistic and taxonomic knowledge of French Polynesia for over 15 years.
Research article:
Krajčovičová K, Ramage T, Jacq FA, Christophoryová J (2024) Pseudoscorpions (Arachnida, Pseudoscorpiones) from French Polynesia with first species records and description of new species. ZooKeys 1192: 29-43. https://doi.org/10.3897/zookeys.1192.111308
The indexing is one of the major outcomes from the partnerships within the Horizon 2020-funded project Biodiversity Community Integrated Knowledge Library (BiCIKL)
In a joint effort between the Swiss-based Text Mining group of Patrick Ruch at SIB (developing SIBiLS), the text- and data-mining association Plazi and scientific publisher Pensoft, the long-time collaborators have started feeding full-text content of over 500,000 taxonomic treatments extracted by Plazi and tens of thousands full-text articles from 40 well-renowned biodiversity journals published by Pensoft to the SIBiLS database.
What this means is that users at SIBiLS – be it human or AI – have now gained access to advanced text- and data-mining tools, including AI-powered factoid question-answering capacities, to query all this full-text indexed content and seek out, for example, species traits and biotic interactions.
To index and directly feed the content from its 40+ academic outlets at SIBiLS, Pensoft relies on advanced and full-text TaxPub JATS XML journal publication workflow, powered by the ARPHA publishing platform. Meanwhile, Plazi uses its GoldenGate text- and data-mining software to harvest taxon treatments from over 80 journals stored at TreatmentBank and the Biodiversity Literature Repository, and then further re-used by GBIF, OpenBiodiv and now by SiBILS.
Seen as a pilot, the indexing – the partners believe – could soon be extended with other journals relying on modern publishing or converted legacy publications.
However, there were still gaps left to bridge before SIBiLS could indeed be dubbed “the Biodiversity PMC”, and those have mostly been about volume and breadth of content. While the above-mentioned five journals by Pensoft had long been indexed by SIBiLS through harvesting PMC, those had been quite an exception since, several years ago, a reorganisation at PMC moved the focus of the database to almost exclusively biomedical content, thus leaving biodiversity journals out of the scope of the database.
In the meantime, while Plazi has been feeding SIBiLS a growing volume of taxonomic treatments and visual data, as it was exponentially increasing the number of publishers and journals it mined data from, a lot of biodiversity data (e.g. genetic, molecular, ecological) published in the article narratives that were not taxon treatments could not make it to the portal.
“We all know the advantages and practical uses PMC offers to its users, so we cannot miss the opportunity to incorporate this well-proven approach to navigate the data deluge in biodiversity science. Undoubtedly, it is an extremely ambitious and demanding task. Yet, I believe that, at the BiCIKL consortium, we have made it pretty clear we have the necessary expertise, know-how and aspiration to take on the challenge,”
said Prof. Lyubomir Penev, founder/CEO at Pensoft and project coordinator of BiCIKL.
“For far too long, scientific knowledge about biodiversity has been imprisoned in a continuously growing corpus of scientific outputs, which – most of the time – are published in unstructured formats, such as PDF, or as paywalled content, and often locked by both! This means that they are – at best – difficult to access and comprehend by computer algorithms. In the meantime, we need all that knowledge, in order to accelerate our understanding of the dynamics of the global biodiversity crisis and to efficiently assess the impact of climate change. This is why the need for advanced workflows and tools to annotate, mine, query and discover new facts from the available literature is more than obvious,”
added Dr. Donat Agosti, President at Plazi.
“In the course of the BiCIKL project, at SIBiLS, we started indexing a larger set of biodiversity-related contents in the broad sense, including environmental sciences and ecology, to build a new literature database, or what we now call ‘Biodiversity PMC’. Now, with the help of Plazi and Pensoft, we provide a unique entry point to half a million taxonomic treatments, which were not included into the original PubMed Central. Next on the list is to expand our network of literature sources and continue this exponential growth of queryable biodiversity knowledge to turn Biodiversity PMC into the “One Health” library. We promise to keep you posted,”
said Dr. Patrick Ruch, Group Leader at SIB and Head of Research at HES-SO, HEG Geneva, Switzerland.
SIB is an internationally recognized non-profit organisation, dedicated to biological and biomedical data science. SIB’s data scientists are passionate about creating knowledge and solving complex questions in many fields, from biodiversity and evolution to medicine. They provide essential databases and software platforms as well as bioinformatics expertise and services to academic, clinical, and industry groups. With the recent creation of the Environmental Bioinformatics group, led by Robert Waterhouse, SIB is engaged in an unprecedented effort to streamline data across molecular biology, health and biodiversity. SIB also federates the Swiss bioinformatics community of some 900 scientists, encouraging collaboration and knowledge sharing.
***
About Plazi:
Plazi is an association supporting and promoting the development of persistent and openly accessible digital taxonomic literature. To this end, Plazi maintains TreatmentBank, a digital taxonomic literature repository to enable archiving of taxonomic treatments; develops and maintains TaxPub, an extension of the National Library of Medicine / National Center for Biotechnology Informatics Journal Article Tag Suite for taxonomic treatments; is co-founder of the Biodiversity Literature Repository at Zenodo, participates in the development of new models for publishing taxonomic treatments in order to maximise interoperability with other relevant cyberinfrastructure components such as name servers and biodiversity resources; and advocates and educates about the vital importance of maintaining free and open access to scientific discourse and data. Plazi is a major contributor to the Global Biodiversity Information Facility.
Leading scholarly publisher Pensoft has announced a strategic collaboration with R Discovery, the AI-powered research discovery platform by Cactus Communications, a renowned science communications and technology company. This partnership aims to revolutionize the accessibility and discoverability of research articles published by Pensoft, making them more readily available on R Discovery to its over three million researchers across the globe.
R Discovery, acclaimed for its advanced algorithms and an extensive database boasting over 120 million scholarly articles, empowers researchers with intelligent search capabilities and personalized recommendations. Through its innovative Reading Feed feature, R Discovery delivers tailored suggestions in a format reminiscent of social media, identifying articles based on individual research interests. This not only saves time but also keeps researchers updated with the latest and most relevant studies in their field.
Open Science is much more than cost-free access to research output.
Lyubomir Penev
One of R Discovery’s standout features is its ability to provide paper summaries, audio readings, and language translation, enabling users to quickly assess a paper’s relevance and enhance their research reading experience significantly.
With over 2.5 million app downloads and upwards of 80 million journal articles featured, the R Discovery database is one of the largest scholarly content repositories.
“At Pensoft, we do realise that Open Science is much more than cost-free access to research outputs. It is also about easier discoverability and reusability, or, in other words, how likely it is for the reader to come across a particular scientific publication and, as a result, cite and build on those findings in his/her own studies. By feeding the content of our journals into R Discovery, we’re further facilitating the discoverability of the research done and shared by the authors who trust us with their work,” said ARPHA’s and Pensoft’s founder and CEO Prof. Lyubomir Penev.
Abhishek Goel, Co-Founder and CEO of Cactus Communications, commented on the collaboration, “We are delighted to work with Pensoft and offer researchers easy access to the publisher’s high-quality research articles on R Discovery. This is a milestone in our quest to support academia in advancing open science that can help researchers improve the world.”
So far, R Discovery has successfully established partnership with over 20 publishers, enhancing the platform’s extensive repository of scholarly content. By joining forces with R Discovery, Pensoft solidifies its dedication to making scholarly publications from its open-access, peer-reviewed journal portfolio easily discoverable and accessible.
Dr. Paul D. N. Hebert, known as “the father of DNA barcoding,” has been honoured with the prestigious Benjamin Franklin Medal, a testament to his trailblazing contributions to biodiversity science.
Dr. Hebert’s innovative work has advanced our understanding of global biodiversity, making the identification of species easier, which in turn helps support global conservation efforts. By devising a method that allows the quick and efficient discerning of species, he has transformed biodiversity science.
DNA barcoding has many applications in the classification and monitoring of biodiversity. It can help protect endangered species, control agriculture pests, and identify disease vectors.
Dr. Hebert is also chair of the advisory board of Pensoft’s journal Metabarcoding and Metagenomics. He has authored 13 papers in ZooKeys, substantially contributing to untangling the taxonomy of braconid wasps, butterflies, and other insects.
Acylomus ergoti, one of the many insect species Dr. Hebert has worked on.
His innovative approach has sparked discussions and debates around the role of novel methodologies in taxonomy.
Dr. Hebert’s recognition with the Benjamin Franklin Medal demonstrates the critical role of biodiversity studies in dealing with global challenges such as the biodiversity crisis. He has inspired a generation of scientists to push the boundaries of knowledge and drive innovation in research technology.
We at Pensoft extend our heartfelt congratulations to Dr. Paul D. N. Hebert on this well-deserved recognition. He continues to lead the way in unravelling the complexities of global biodiversity.
A new agamid joins Asia’s rich reptile fauna, officially described as new to science in the open-access journal ZooKeys.
Calotes wangi.
“From 2009 to 2022, we conducted a series of field surveys in South China and collected a number of specimens of the Calotes versicolor species complex, and found that the population of what we thought was Calotes versicolor in South China and Northern Vietnam was a new undescribed species and two subspecies,” says Yong Huang, whose team described the new species.
Calotes wangi hainanensis, a newly discovered subspecies of Calotes wangi.
Wang’s garden lizard (Calotes wangi) is less than 9 cm long, and one of its distinguishing features is its orange tongue.
“Calotes wangi is found in subtropical evergreen broad-leaved forests and tropical monsoon forests in southern China and northern Vietnam, mostly in mountainous areas, hills and plains on forest edges, arable land, shrub lands, and even urban green belts. It is active at the edge of the forest, and when it is in danger, it rushes into bushes or climbs tree trunks to hide. Investigations found that the lizards lie on sloping shrub branches at night, sleeping close to the branches,” says Yong Huang.
Calotes wangi.
It is active from April to October every year, while in the tropics it is active from March to November or even longer, and eats a variety of insects, spiders, and other arthropods.
For now, the researchers estimate that the new species is not threatened, but they do note that in some areas its habitat is fragmented.
Images of Calotes wangi’s habitat.
“In addition, their bodies are used medicinally and the lizards are also eaten,” they write in their research paper.
This is why they suggest that the local government strengthen the protection of their ecological environment and pay close attention to the population dynamics.
Research article:
Huang Y, Li H, Wang Y, Li M, Hou M, Cai B (2023) Taxonomic review of the Calotes versicolor complex (Agamidae, Sauria, Squamata) in China, with description of a new species and subspecies. ZooKeys 1187: 63-89. https://doi.org/10.3897/zookeys.1187.110704
