Volunteers and members of the “Collections Club” of the Field Museum provide a blueprint for how community scientists can help researchers around the world.
Matt von Konrat teaching student volunteers how to digitize museum specimens. Photo by Michelle Kuo (c).
There are over three billion specimens and cultural objects housed in natural history collections around the world—things like fossils, dried plants, and pinned insects. Close to forty million of them are at the Field Museum in Chicago, mostly behind the scenes in a vast library documenting life on Earth.
These collections are used by scientists at the museum and around the world to explore what lived where and when and how living things have changed over time.
However, much of the information about these collections is hard to access, because there are no digital records of it.
Specimens from the “behind-the-scenes collections“ at the Field Museum. Photo by John Weinstein.
Community scientists volunteering at the Field Museum who have formed a Collections Club are helping to solve this problem.
So far, they’ve digitized more than a quarter-million collections items and records.
The Field Museum recently published a scientific paper in the journal NaturalHistory Collections and Museumomics about the work of these community scientists as a record of what they’ve accomplished and as a blueprint for other natural history collections to work with volunteers in their communities.
By the way, the Field Museum prefers to use the term “community scientists” rather than the synonymous “citizen scientists”, in order to emphasize that the work is a community effort. They also wish to be inclusive of all volunteers regardless of their citizenship status. Several community scientists are in fact listed as co-authors of the new.
“What’s remarkable is how the enthusiasm has sustained and grown,” says Matt von Konrat, Head of Botanical Collections at the Field Museum and the lead author of the paper.
“Our surveys show that participants are increasingly motivated by altruistic reasons—they want to contribute to science and support the museum’s mission.
The fact that many of our volunteers are now co-authors on this scientific paper shows how far we’ve come in breaking down traditional barriers between professional scientists and community researchers.”
Since 2015, over 3,800 volunteers have contributed more than 13,500 hours helping to digitize, catalog, and preserve specimens—equivalent to nearly eight years of full-time work. Their efforts have processed over 300,000 scientific specimens, records and objects, making valuable data accessible to researchers worldwide.
“At its core, the Field Museum strives to connect people to the natural world and the human story. The Collections Club reflects this mission by transforming over 300,000 specimens into a digital and physical legacy, providing scientists across the globe with the data they need to understand and protect our biodiversity,”
says von Konrat.
The program’s success has been driven by both in-person and virtual engagement opportunities, particularly through initiatives like WeDigBio (Worldwide Engagement for Digitizing Biocollections) and the Field Museum’s Collections Club. During the height of the COVID-19 pandemic, the program successfully pivoted to virtual participation, maintaining strong community connections when they were needed most.
Community scientists at the Field Museum’s 2019 WeDigBio event curating lichen specimens – a critical process unlocking scientific information from natural history collections. Photo by Robert Salm.
“There were so many dynamics working against us during COVID: sporadic closures and re-openings in Chicago of restaurants, parks, museums, and businesses. The ability for me to continue cataloging and repackaging specimens for the Field Museum was the only constant and sane reference for me; days of the week and working hours had no boundaries. I don’t think any other museum in Chicago had volunteers as dedicated as the Field Museum, and I was happy to be part of the experience.”
says Robert Salm, a volunteer in the Field Museum’s botanical collections.
A Mobile Museum display made by Field Museum Collections Club members Winne and Gwen Blake. Photo by Erryn Blake.
The impact extends beyond adults to inspire the next generation of scientists. In one touching example highlighted in the paper, two fifth-grade students were so inspired by their participation that they created their own “Mobile Museum” to share natural history with other young people. These young scientists are among the paper’s co-authors, demonstrating the program’s commitment to elevating youth voices in science.
According to the Blake family, whose children Winnie and Gwen created the Mobile Museum, “Collections Club makes science tangible, accessible, and real. It shows students that away from a conventional classroom setting, where science can feel like a chore, this program helps in contributing to a global community benefiting countless research efforts. The Mobile Museum was created as an extension of Collections Club to bring the passion for science to kids of all ages.”
Collections Club members Winne (blue shirt) and Gwen (pink shirt). Photo by Erryn Blake.
The Field Museum’s model demonstrates how institutions of any size can engage their communities in meaningful scientific work. The paper provides detailed recommendations and checklists for other organizations looking to develop similar programs.
“This success story wouldn’t have been possible without Chicago’s vibrant media landscape helping us reach new audiences,” said von Konrat.
“From local blogs to major television networks, each platform played a vital role in building this community of scientists.
We hope this model inspires other museums and research institutions to build similar programs.
Together, we are fostering a shared legacy that underscores the value of biodiversity and scientific heritage for future generations.”
The full research paper, published in the journal Natural History Collections and Museomics, provides a comprehensive overview of the program’s development and impact over nearly a decade of community engagement, while setting a new standard for inclusive scientific authorship.
Stay up-to-date with publications and news from the Natural History Collections and Museomics (NHCM) journal on social media on BlueSky, X and Facebook.
Research article:
von Konrat M, Rodriguez Y, Bailey C, Gwilliam III GF, Christian C, Aguero B, Ahn J, Albion Z, Allen JR, Bailey C, Blake E, Blake W, Blake G, Briscoe L, Budke JM, Campbell T, Chansler M, Clark D, Delapena R, Denslow M, Dodinval D, Dux E, Ellis S, Ellwood E, Enkhbayer M, Ens B, Evans NM, Fabian A, Ferguson A, Gaswick W, Golembiewski K, Grant S, Hancock L, Hansen K, Janney B, Jones J, Kachian Z, Kawasaki ML, Kellum K, Leek O, Lichamer A, Maier C, Mast A, Martinec JL, Mayer P, Mladek M, Nadhifah A, Neefus C, Nodulman M, Oliver M, Overberg K, Townsend Peterson A, Qazi-Lampert A, Rothfels C, Ryan ZA, Salm R, Schreiner D, Schreiner M, Tepe EJ, Turcatel M, Vega A, Wade H, Webbink K, Weinand D, Widhelm T, Zwingelberg M (2024) From spectators to stewards: Transforming public involvement in natural history collections. Natural History Collections and Museomics 1: 1-33. https://doi.org/10.3897/nhcm.1.138247
Yet another hectic year has passed for our team at Pensoft, so it feels right to look back at the highlights from the last 12 months, as we buckle up for the leaps and strides in 2025.
In the past, we have used the occasion to take you back to the best moments of our most popular journals (see this list of 2023 highlights from ZooKeys, MycoKeys, PhytoKeys and more!); share milestones related to our ARPHA publishing platform (see the new journals, integrations and features from 2023); or let you reminisce about the coolest research published across our journals during the year(check out our Top 10 new species from 2021).
In 2022, when we celebrated our 30th anniversary on the academic scene, we extended our festive spirit throughout the year as we dived deep into those fantastic three decades. We put up Pensoft’s timeline and finished the year with a New Species Showdown tournament, where our followers on (what was back then) Twitter voted twice a week for their favourite species EVER described on the pages of our taxonomic journals.
Spoiler alert: we will be releasing our 2024 Top 10 New Species on Monday, 23 December, so you’d better go to the right of this screen and subscribe to our blog!
As we realised we might’ve been a bit biased towards our publishing activities over the years, this time, hereby, we chose to present you a retrospection that captures our best 2024 moments from across the departments, and shed light on how the publishing, technology and project communication endeavours fit together to make Pensoft what it is.
In truth, we take pride in being an exponentially growing family of multiple departments that currently comprises over 60 full-time employees and about a dozen freelancers working from all corners of the world, including Australia, Canada, Belgium and the United Kingdom. Together, we are all determined to make sure we continuously improve our service to all who have trusted us: authors, reviewers, editors, client journals, learned societies, research institutions, project consortia and other external collaborators.
After all, great deeds are only possible when you team up with great like-minded people!
In 2024, at Pensoft, we were hugely pleased to see a significant growth in the published output at almost all our journals, including record-breaking numbers in both submissions and publications at flagship titles of ours, including the Biodiversity Data Journal, PhytoKeys and MycoKeys.
Later in 2024, our colleagues, who work together with our clients to ensure their journals comply with the requirements of the top scholarly databases before they apply for indexation, informed us that another two journals in our portfolio have had their applications to Clarivate’s Web of Science successfully accepted. These are the newest journal of the International Association of Vegetation Science: Vegetation and Classification, and Metabarcoding and Metagenomics: a journal we launched in 2017 in collaboration with a team of brilliant scientists working together at the time within the DNAquaNet COST Action.
In 2024, we also joined the celebrations of our long-time partners at the Museum für Naturkunde Berlin, whose three journals: Zoosystematics and Evolution, Deutsche Entomologische Zeitschrift and Fossil Record are all part of our journal portfolio. This year marked the 10th Open Access anniversary of the three journals.
In the meantime, we also registered a record in new titles either joining the Pensoft portfolio or opting for ARPHA Platform’s white-label publishing solution, where journal owners retain exclusivity for the publication of their titles, yet use ARPHA’s end-to-end technology and as many human-provided services as necessary.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev with Prof. Dr. Marc Stadler, Editor-in-Chief of IMA Fungus and President of the International Mycological Association at the Pensoft booth at the 12th International Mycological Congress (August, the Netherlands).
Amongst our new partners are the International Mycological Association who moved their official journal IMA Fungus to ARPHA Platform. As part of Pensoft’s scholarly portfolio, the renowned journal joins another well-known academic title in the field of mycology: MycoKeys, which was launched by Pensoft in 2011. The big announcement was aptly made public at this year’s 12th International Mycological Congress where visitors of the Pensoft stand could often spot newly elected IMA President and IMA Fungus Chief editor: Marc Stadler chatting with our founder and CEO Lyubomir Penev by the Pensoft/MycoKeys booth.
On our end, we did not stop supporting enthusiastic and proactive scientists in their attempt to bridge gaps in scientific knowledge. In January, we launched the Estuarine Management and Technologies journal together with Dr. Soufiane Haddout of the Ibn Tofail University, Morocco.
Later on, Dr. Franco Andreone (Museo Regionale di Scienze Naturali, Italy) sought us with the idea to launch a journal addressing the role of natural history museums and herbaria collections in scientific progress. This collaboration resulted in the Natural History Collections and Museomics journal, officially announced at the joint TDWG-SPNHC conference in Okinawa, Japan in August.
Around this time, we finalised our similarly exciting journal project in partnership with Prof. Dr. Volker Grimm (UFZ, Germany), Prof. Dr. Karin Frank (UFZ, Germany), Prof. Dr. Mark E. Hauber (City University of New York) and Prof. Dr. Florian Jeltsch (University of Potsdam, Germany). The outcome of this collaboration is called Individual-based Ecology: a journal that aims to promote an individual-based perspective in ecology, as it closes the knowledge gap between individual-level responses and broader ecological patterns.
The three newly-launched journals are all published under the Diamond Open Access model, where neither access, nor publication is subject to charges.
As you can see, we have a lot to be proud of in terms of our journals. This is also why in 2024 our team took a record number of trips to attend major scientific events, where we got the chance to meet face-to-face with long-time editors, authors, reviewers and readers of our journals. Even more exciting was meeting the new faces of scientific research and learning about their own take on scholarship and academic journals.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev welcomed editors at PhytoKeys to the Pensoft-PhytoKeys-branded booth at the XX International Botanical Congress in July 2024 (Spain).
We cannot possibly comment on Pensoft’s tech progress in 2024 without mentioning the EU-funded project BiCIKL (acronym for Biodiversity Community Integrated Knowledge Library) that we coordinated for three years ending up last April.
This 36-month endeavour saw 14 member institutions and 15 research infrastructures representing diverse actors from the biodiversity data realm come together to improve bi-directional links between different platforms, standards, formats and scientific fields.
Following these three years of collaborative work, we reported a great many notable research outputs from our consortium (find about them in the open-science project collection in the Research Ideas and Outcomes journal, titled “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective”) that culminated in the Biodiversity Knowledge Hub: a one-stop portal that allows users to access FAIR and interlinked biodiversity data and services in a few clicks; and also a set of policy recommendations addressing key policy makers, research institutions and funders who deal with various types of data about the world’s biodiversity, and are thereby responsible to ensuring there findability, accessibility, interoperability and reusability (FAIR-ness).
Apart from coordinating BiCIKL, we also worked side-by-side with our partners to develop, refine and test each other’s tools and services, in order to make sure that they communicate efficiently with each other, thereby aligning with the principles of FAIR data and the needs of the scientific community in the long run.
During those three years we made a lot of refinements to our OpenBiodiv: a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System, and our ARPHA Writing Tool. The latter is an XML-based online authoring environment using a large set of pre-formatted templates, where manuscripts are collaboratively written, edited and submitted to participating journals published on ARPHA Platform. What makes the tool particularly special is its multiple features that streamline and FAIRify data publishing as part of a scientific publication, especially in the field of biodiversity knowledge. In fact, we made enough improvements to the ARPHA Writing Tool that we will be soon officially releasing its 2.0 version!
OpenBiodiv – The Open Biodiversity Knowledge Management System
ARPHA Writing Tool 2.0
Amongst our collaborative projects are the Nanopublications for Biodiversity workflow that we co-developed with KnowledgePixels to allow researchers to ‘fragment’ their most important scientific findings into machine-actionable and machine-interpretable statements. Being the smallest units of publishable information, these ‘pixels of knowledge’ present an assertion about anything that can be uniquely identified and attributed to its author and serve to communicate a single statement, its original source (provenance) and citation record (publication info).
Nanopublications for Biodiversity
In partnership with the Swiss-based Text Mining group of Patrick Ruch at SIB and the text- and data-mining association Plazi, we brought the SIB Literature Services (SIBiLS) database one step closer to solidifying its “Biodiversity PMC” portal and working title.
Understandably, we spent a lot of effort, time and enthusiasm in raising awareness about our most recent innovations, in addition to our long-standing workflows, formats and tools developed with the aim to facilitate open and efficient access to scientific data; and their integration into published scholarly work, as well as receiving well-deserved recognition for their collection.
We just can’t stress it enough how important and beneficial it is for everyone to have high-quality FAIR data, ideally made available within a formal scientific publication!
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
Pensoft’s CTO Teodor Georgiev talks about innovative methods and good practices in the publication of biodiversity data in scholarly papers at the First national meeting of the Bulgarian Barcode of Life (BgBOL) consortium (December, Bulgaria).
🤔What is a Data Paper?
👍 A means to describe a #dataset – like the ones on @GBIF – in a standardised, widely accepted #scientific article format.
👇🧵Highlights from @LyuboPenev's talk at the int'l symposium "#BiodiversityData in montane & arid Eurasia" in Kazakhstan 🇰🇿
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev presenting his “Data papers on biodiversity” talk at the “Biodiversity data in montane and arid Eurasia” symposium jointly organized by GBIF and by the Institute of Zoology of Republic of Kazakhstan (November, Kazakhstan).
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📸Today, at the @EASEeditors symposium, our @teodorpensoft gave a sneak peek into the AI-assisted tools at @ARPHAplatform we have been working on (e.g. Word -> JATS XML conversion) and the #ARPHA Writing Tool 2.0 (coming up in early 2025)!🎉
Pensoft’s CTO Teodor Georgiev presents new features and workflows currently in testing at the ARPHA Writing Tool 2.0 at the EASE Autumn Symposium 2024 (online event).Pensoft’s Head of Journal development, Marketing and PR Iva Boyadzhieva talks about Pensoft’s data publishing approach and innovations at the German Ecological Society 53rd Annual Conference (September, Germany).
Pensoft as a science communicator
At our Project team, which is undoubtedly the fastest developing department at Pensoft, science communicators are working closely with technology and publishing teams to help consortia bring their scientific results closer to policy actors, decision-makers and the society at large.
Ultimately, bridging the notorious chasm between researchers and global politics boils down to mutual understanding and dialogue.
Pensoft’s communication team attended COP16 (November 2024, Colombia) along with partners at the consortia of CO-OP4CBD, BioAgora and RESPIN: three Horizon Europe projects, whose communication and dissemination is led by Pensoft.
Throughout 2024, the team, comprising 20 science communicators and project managers, has been working as part of 27 EU-funded project consortia, including nine that have only started this year (check out all partnering projects on the Pensoft website, ordered from most recently started to oldest). Apart from communicating key outcomes and activities during the duration of the projects, at many of the projects, our team has also been actively involved in their grant proposal drafting, coordination, administration, platform development, graphic and web design and others (see all project services offered by Pensoft to consortia).
📸As leaders of the “Stakeholder engagement, comms & dissemination” WP at @BCubedProject, we joined the annual meeting to report on project branding, #scicomm & #DataManagement.
Naturally, we had a seat on the front row during many milestones achieved by our partners at all those 27 ongoing projects, and communicated to the public by our communicators.
Amongst those are the release of the InsectsCount web application developed within the Horizon 2020 project SHOWCASE. Through innovative gamification elements, the app encourages users to share valuable data about flower-visiting insects, which in turn help researchers gain new knowledge about the relationship between observed species and the region’s land use and management practices (learn more about InsectsCount on the SHOWCASE prroject website).
Another fantastic project output was the long-awaited dataset of maps of annual forest disturbances across 38 European countries derived from the Landsat satellite data archive published by the Horizon Europe project ForestPaths in April (find more about the European Forest Disturbance Atlas on the ForestPaths project website).
In a major company highlight, last month, our project team participated in COP29 in Baku, Azerbaijan with a side event dedicated to the role of open science and science communication in climate- and biodiversity-friendly policy.
Pensoft’s participation at COP29 – as well as our perspective on FAIR data and open science – were recently covered in an interview by Exposed by CMD (a US-based news media accredited to cover the event) with our science communicator Alexandra Korcheva and project manager Boris Barov.
You see, A LOT of great things worth celebrating happened during the year for us at Pensoft: all thanks to ceaselessly flourishing collaboration based on transparency, trust and integrity. Huge ‘THANK YOU!’ goes to everyone who has joined us in our endeavours!
Here’s to many more shared achievements coming up in 2025!
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The first national symposium on DNA barcoding took place on 5 December 2025 at the Headquarters of the Bulgarian Academy of Sciences, where it was attended by renowned Bulgarian scientists in the field, in addition to early-career researchers and PhD students representing different institutions.
The event saw a day-long series of lectures and a poster session, during which the participants had the opportunity to get acquainted with the work of their colleagues in various fields of biology.
Amongst the topics were the development of the Bulgarian molecular laboratory in Antarctica; the study of the invertebrate fauna currently underrepresented in DNA reference libraries; the return of the beaver to Bulgaria; and research on phytopathogenic fungi on agricultural crops.
During the coffee breaks sponsored by the National Museum of Natural History, the delegates had the chance to network and exchange experience between institutions and fields of expertise.
Teodor Georgiev, CTO at Pensoft held a presentation about the 2.0 version of the ARPHA Writing Tool. In its greatly improved version, it will feature many new, refined and elaborated workflows that help and simplify data publishing, discoverability, reusability and overall FAIRness.
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
The event was opened and closed by Prof. Dr. Lyubomir Penev, who was elected as the Chair of the Governing Board at the Bulgarian Barcode of Life last year. He is also the founder and CEO of Pensoft.
In his closing speech, Penev expressed his hopes for the development of BgBOL and confirmed the plans of the consortium to turn the symposium into an annual tradition. Congratulations were extended to BgBOL’s newest member: the Institute of Oceanology “Fridtjof Nansen” at BAS.
He also announced the launch of a new special collection in the Biodiversity Data Journal, which will welcome scientific papers related to the Bulgarian and Balkan biota and using DNA barcoding methods. The authors of the first five papers to be submitted and accepted at the collection will take advantage of free publication.
Finally, he thanked the hosts of the Bulgarian Academy of Sciences Headquarters: Stefania Kamenova and Assoc. Prof. Dr. Georgi Bonchev, who are also Vice-Chair and Chair of the Executive Board at BgBOL, respectively. A special thanks went also to Prof. Pavel Stoev, Director of the National Museum of Natural History.
One third of Vietnam’s 329 mammal species are threatened with extinction, according to a recent study published in our open-access journal Nature Conservation.
Conducted by German scientist Hanna Höffner of the University of Cologne and Cologne Zoo, alongside an international team, the research underscores Vietnam’s vital but fragile position as a biodiversity hub within the Indo-Burma Biodiversity Hotspot.
The study reveals that 112 mammal species in Vietnam face extinction, despite most being found in at least one protected area. Some micro-endemic species, such as the Da Lat tube-nosed bat (Murina harpioloides), are particularly vulnerable as they are not present in any protected sites.
Murina harpioloides. Credit: Son Truong Nguyen.Hipposideros alongensis. Credit: Son Truong Nguyen.
Around 40% of the threatened species lack ex situ conservation (zoo conservation breeding) programs, which increases their risk of extinction. Iconic species like the saola (Pseudoryx vuquangensis), the silver-backed chevrotain (Tragulus versicolor), and the large-antlered muntjac (Muntiacus vuquangensis) are among the Critically Endangered taxa at risk.
The study advocates for the IUCN‘s “One Plan Approach” to species conservation, which calls for combining different expertise and integrated in situ and ex situ management strategies. Establishing assurance colonies in zoos and increasing connectivity between isolated protected areas are critical recommendations for safeguarding Vietnam’s unique mammal diversity.
A gaur (Bos gaurus) in Vietnam.
By building up ex situ populations for threatened taxa, zoos can help to literally “buy time” and act as modern arks that can contribute with later releases according to the IUCN’s “Reverse the Red” conservation campaign. Ex situ species holding data by Species360 are now also integrated in the IUCN Red List species’ chapters (a “One Plan” approach to species data).
Ex situ preservation of threatened Vietnamese mammals worldwide.
Vietnam is home to a rich array of mammals, including 36 endemic species and nine micro-endemic taxa. Its primate fauna is particularly noteworthy, with 28 species, the highest number in mainland Southeast Asia. This includes the endemic tonkin snub-nosed monkey (Rhinopithecus avunculus) and Delacour’s langur (Trachypithecus delacouri).
Northern Vietnam and the Annamite Mountain Range are biodiversity hotspots, hosting species such as the Critically Endangered Cao-vit gibbon (Nomascus nasutus), the southern white-cheeked gibbon (Nomascus siki) and the red-shanked douc (Pygathrix nemaeus).
A red-shanked douc (Pygathrix nemaeus).
The study calls for prioritising the “One Plan Approach” to conservation of highly threatened species, reassessing Data Deficient species, and enhancing habitat connectivity.
VIETNAMAZING logo.
The conservation campaign VIETNAMAZING by EAZA (European Association of Zoos and Aquaria) currently highlights Vietnam’s biodiversity treasure and advocates for improved conservation of threatened mammal species.
Original study
Höffner H, Nguyen ST, Dang PH, Motokawa M, Oshida T, Rödder D, Nguyen TQ, Le MD, Bui HT, Ziegler T (2024) Conservation priorities for threatened mammals of Vietnam: Implementation of the IUCN´s One Plan Approach. Nature Conservation 56: 161-180. https://doi.org/10.3897/natureconservation.56.128129
“You fool. No man can kill me,” said the Witch-king of Angmar.
“I am no man!” Éowyn replied, “I am a newly discovered freshwater snail species from Brazil!”
Okay, maybe that isn’t exactly how it goes – but it’s our way of letting you know that two newly discovered snail species have been named in honour of Éowyn and Meriadoc from The Lord of the Rings.
Described in the open-access journalZoosystematics and Evolution, Idiopyrgus eowynae and Idiopyrgus meriadoci were named by fans of J.R.R. Tolkien’s iconic series (who happen to also be successful researchers).
Idiopyrguseowynae.
Explaining the name Idiopyrgus eowynae, they said: “Éowyn exemplifies courage, resilience, and resistance against darkness, both internal and external, standing against Gríma Wormtongue and the Witch-king of Angmar.”
The discovered species are troglobitic and were found in a single limestone cave in the Serra do Ramalho karst area of Bahia state, northeastern Brazil. The gastropods belong to the family Tomichiidae, a group previously known for inhabiting surface freshwater environments but now shown to have adapted to subterranean ecosystems.
Both snails have unique periostracal hairs—thorn-like structures—on their shells, a feature uncommon among Brazilian freshwater snails. Their cave-specific adaptations include reduced pigmentation, fragile shells, and small size.
The Gruna do Pedro Cassiano cave, area and entrance.
The Gruna do Pedro Cassiano cave, where the snails were discovered, is a fragile ecosystem threatened by water extraction, deforestation, and climate change. Due to the species’ limited habitat and environmental threats to their subterranean ecosystem, the authors recommend a ‘Vulnerable’ classification. The findings highlight the importance of protecting Brazil’s subterranean biodiversity and raise concerns about the impact of human activities on these delicate ecosystems.
These concerns played a part in the naming of Idiopyrgus meriadoci, as the researchers state: “Besides standing with Éowyn against the Witch-king in the Battle of the Pelennor Fields, Merry is also an example of the fight for nature conservation in Middle-earth, pushing the Ents into action and ultimately ending Saruman’s threat to Fangorn Forest.”
Idiopyrgusmeriadoci.
On his choice of Tolkien-inspired names for the new species, lead author Dr Rodrigo B. Salvador of the Finnish Museum of Natural History said: “I tend to use lots of pop culture references in my species names—from books, comics, Dungeons & Dragons, and video games. If we think about it, there is a long-standing tradition in taxonomy of using names from mythology and literature to name species.
“Granted, in the old days, those names mostly came from Greek and Roman myths and Shakespeare. Today, we have newer mythologies and literature classics, so in a way, we’re just continuing that tradition.”
Salvador was also resposible for naming a land snail after Shar of Dungeons and Dragons, and more recently Baldur’s Gate, fame. Read about it below!
Salvador RB, Bichuette ME (2024) Idiopyrgus Pilsbry, 1911 (Gastropoda, Tomichiidae): a relict genus radiating into subterranean environments. Zoosystematics and Evolution 100(4): 1543-1556. https://doi.org/10.3897/zse.100.136428
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Beneath the arid pre-Saharan zone of Morocco lies Aziza Cave, also known as Kef Aziza or Tazouguert Cave. The vast subterranean system stretches over 3.5 kilometers of surveyed galleries, making it Morocco’s fifth-largest cave system and one of the top ten most extensive caves in North Africa.
A view of the Sahara desert and Aziza cave’s entrance.
Beyond its sheer size and geological significance, Aziza Cave harbors a rich and diverse array of subterranean life that is only now beginning to be revealed widely. In a recent study in the journal Subterranean Biology, researchers cataloged the subterranean fauna of Aziza Cave and provided a detailed checklist of 26 different taxa potentially representing cave-restricted species. Among these are 22 troglobitic species, organisms that have adapted to life entirely within the cave environment, and four stygobitic species, which have specially evolved to live in the cave’s groundwater.
Four of the authors of the paper.
The discovery of such a variety of species highlights the cave as a critical biodiversity hotspot, not only in Morocco but for the African continent as a whole. One alarming aspect of this discovery is the large number of species that still need to be thoroughly studied or described.
Dysdera caeca, a cave spider
Only about 34.6% of the species in Aziza Cave have been formally identified and described by scientists. Further research could lead to the identification and description of many new species. The fauna found in Aziza Cave includes a wide variety of life forms, with the richest groups being beetles (Coleoptera), spiders (Araneae), springtails (Entomobryomorpha), and woodlice (Isopoda). Some have evolved remarkable adaptations to their lightless, nutrient-scarce environment, such as reduced pigmentation, elongated appendages, and heightened sensory capabilities that help them navigate and survive in this extreme habitat.
Long-tailed bat Rhinopoma hardwickei.
Despite these discoveries, much of Aziza Cave remains unexplored. Large portions of this karstic system have yet to be surveyed, and researchers believe that the biodiversity uncovered so far is just the beginning. The cave’s unexplored depths likely hold many more secrets, including potentially new species that have yet to be seen by human eyes. This prospect has sparked great interest among speleologists and conservationists, who see Aziza Cave as an important research site for studying subterranean ecosystems.
Magnezia gardei, a cave isopod.
The biodiversity of Aziza Cave is something to celebrate, but it also sheds light on the significant conservation challenges that subterranean habitats in Morocco and across North Africa are facing. Caves are delicate ecosystems that are highly sensitive to changes in their environment. Human activities such as pollution, mining, deforestation, and unsustainable tourism pose severe threats to these ecosystems and the species that depend on them. Once these habitats are damaged or destroyed, it is often impossible to restore them, and the species that inhabit them may face extinction.
Graffiti on the cave walls.
Human-induced impacts have already begun to take their toll in Aziza Cave. Visitors can disrupt the delicate balance of the cave’s ecosystem, change water quality, or introduce pollutants and alien species. These pressures underscore the urgent need for conservation measures to protect this unique environment and its inhabitants. By highlighting the importance of Aziza Cave and similar habitats, the researchers hope to encourage further exploration and study of Africa’s subterranean ecosystems and develop effective conservation strategies to protect them. By protecting these fragile ecosystems and supporting scientific exploration, we can ensure that the incredible biodiversity of Aziza Cave and other subterranean habitats continues to thrive.
Research article:
Moutaouakil S, Souza-Silva M, Oliveira LF, Ghamizi M, Ferreira RL (2024) A cave with remarkably high subterranean diversity in Africa and its significance for biodiversity conservation. Subterranean Biology 50: 1-28. https://doi.org/10.3897/subtbiol.50.113919
Decades after it was first found in Japan, a species of crustacean with unique black-and-white coloring that resembles a panda has been confirmed to be new to science. Melitid amphipods are shrimp-like crustaceans found worldwide. The newly classified Melita panda — named after the charismatic mammal — was first found in the 1990s. Details of the discovery and morphological analysis were published in a ZooKeysarticle on 21 September.
A panda sitting on a rock outdoors, holding a bamboo branch
The discovery of the Melita panda highlights the importance of studying species taxonomy, which is the naming and classification of organisms, for conservation efforts. It is impossible to know if a species is in danger of disappearing if it hasn’t even been identified.
“Despite the fact that biodiversity conservation is a global issue, species diversity and other aspects of biodiversity are still not fully understood. As a first step toward species conservation, we conducted a taxonomic study of amphipod Crustacea, which boasts high species diversity around Japan,” said Ko Tomikawa, a professor at Hiroshima University’s Graduate School of Humanities and Social Sciences in Hiroshima, Japan.
A new species of amphipod with a unique panda pattern was found in the intertidal zone of the Japanese coast. Photo credit: Ko Tomikawa/Hiroshima University
Before the discovery of Melita panda, there were 63 known species of Melita amphipods, with 16 of those found in Japan. Melita panda was found in intertidal waters in Wakayama Prefecture, Japan. There are likely even more unidentified and undescribed species of Melita amphipods in Japan’s coastal waters.
“Study on the amphipod Crustacea in the coastal zone of Japan is lagging behind. In order to accurately assess species diversity, taxonomic studies are necessary. We hope the discovery of a new species of amphipod with the familiar coloring of the panda pattern will increase the public’s interest in biodiversity and taxonomy,” said Tomikawa.
A line drawing of Melita panda.
To identify the Melita panda, researchers did both a morphological study and molecular phylogeny using genomic DNA. The morphological description of Melita panda found unique features including its panda-like colors and other physical characteristics, while molecular phylogeny is used to identify how closely related the Melita panda is to other Melita amphipods. This information is used to create a phylogenetic tree or evolutionary tree of the known Melita amphipods. Phylogenetic trees are diagrams that show the evolutionary relationships between species.
A line drawing of Melita Panda‘s gnathopod 1.
The molecular phylogeny found that Melita panda is closely related to two other Melita amphipods, the Melita nagatai and Melita koreana. The panda-like coloring distinguishes Melita panda from these two other amphipods, along with other physical differences. Its gnathopods, which are claws that extend from the second thoracic segment, sit more forward than other Melita amphipods, covering another one of its appendages. Its setae, which are hair-like structures that look like bristles, are also distinguishable from other Melita amphipods. Together, the Melita nagatai, Melita koreana, and newly discovered Melita panda form a monophyletic group. This means they have a common evolutionary ancestor. In this case, it is the Melita hoshinoi.
Looking ahead, researchers will continue to study the Melita panda.
“Hopefully, a detailed study of the ecology and behavior of Melita panda will reveal the reason for its panda pattern,” said Tomikawa.
Beyond Melita panda, Tomikawa emphasized that there is still more to study.
“Further taxonomic studies on amphipods in uninvestigated areas are expected to lead to the discovery of additional new species. Continued taxonomic studies are expected to elucidate the biodiversity in the coastal environments of the Japanese archipelago and provide important basic data for species conservation,” he said.
Other contributors include Shigeyuki Yamato of Shirahama Katata in Wakayama, Japan, and Hiroyuki Ariyama at the Osaka Museum of Natural History in Osaka, Japan.
The Japan Society for the Promotion of Science KAKENHI grants supported this research.
Research article:
Tomikawa K, Yamato S, Ariyama H (2024) Melita panda, a new species of Melitidae (Crustacea, Amphipoda) from Japan. ZooKeys 1212: 267-283. https://doi.org/10.3897/zookeys.1212.128858
Happy World Animal Day! Today is all about celebrating the incredible species roaming our planet and promoting action for animal rights and welfare.
To mark this special day, we have collected some of our favourite animals published across Pensoft’s journal portfolio.
1. The ‘cute but deadly’ velvet worm
The Tiputini velvet worm (Oroperipatus tiputini). Credit: Roberto José León.
Look at those adorable little legs!
Oroperipatus tiputini is a velvet worm that researchers published as a new species in Zoosystematics and Evolution. These invertebrates are known as “living fossils” because they evolved over 500 million years ago, long before the dinosaurs.
The Tiputini velvet worm (Oroperipatus tiputini) adult and juvenile.
Despite its friendly appearance, the Tiputini velvet worm is an accomplished hunter that shoots a sticky substance from a pair of glands near its face to trap its prey!
Some creatures look like they belong to an era long ago.
But this one has only just been discovered! Found near American Samoa at a depth of 300 m, Nautilus samoaensis was one of three new nautilius species published in ZooKeys in 2023.
Underwater photos of living Nautilus samoaensis.
Sadly, these enigmatic molluscs with beautiful shells are facing population decline, and even extinction, due to the activity of unregulated fisheries.
Any ideas why Neopalpa donaldtrumpi was given its name?
Found in California, Arizona, and some areas of Mexico, this species was named days before Donald J. Trump became the the 45th President of the United States of America.
Neopalpa donaldtrumpi.
Researcher Dr Vazrick Nazari hoped that the fame around the blonde-haired moth would raise awareness for the importance of further conservation efforts for the species’ fragile habitat.
We think this fish may have taken the advice “keep your chin up” a bit too literally.
The longnosed stargazer (Ichthyscopus lebeck) looks like this for good reason – it buries itself in sand, with just its eyes visible, and leaps upwards to ambush prey.
Blue is a rare colour in nature, which is a shame because this tarantula from Thailand looks spectacular. The stylish spider sports iridescent streaks of neon colour on its legs, back, and mouthparts.
Chilobrachys natanicharum was already known in the pet trade as the electric blue tarantula, but a study published ZooKeys finally confirmed it as a unique species.
Tailless whip scorpion (Phrynus whitei). Credit: Fugus Guy via WikiMedia Commons.
Sorry about this one.
Phrynus whitei is an amblypygid – an order of arachnids also known as whip spiders or tailless whip scorpions. Despite its unsettling appearance, it is generally calm around humans and is non-venomous.
While we have enjoyed collecting a few of our favourite species featured in Pensoft journals, it is important to remember the value of every animal, regardless of cuteness or weirdness.
By supporting research and action that aims to protect our planet’s species, we can continue to enjoy our planet’s bizarre biodiversity that never fails to surprise and delight. Happy World Animal Day!
By combining and improving digitally available data and models, BioDT offers approaches for sustainable biodiversity management and ecosystem conservation.
Biodiversity is essential for the processes that support all life on Earth. It provides critical resources such as food and energy, and supports ecosystem health. However, climate change, deforestation, and pollution are destroying habitats, altering ecosystems, and eliminating – or introducing – species that are fundamental for planet’s biosphere.
Cover of the “Building Biodiversity Digital Twins” article collection in RIO journal.
The BioDT project aims to revolutionise our understanding of biodiversity dynamics by integrating advanced modelling, simulation, and prediction capabilities. By combining and improving digitally available data and models, BioDT offers approaches for sustainable biodiversity management and ecosystem conservation. BioDT’s combines expertise in biodiversity, ecological modelling, FAIR data, high-performance computing, and artificial intelligence.
BioDT aims to enhance the accuracy and predictive performance of biodiversity models through iterative development and validation against independent data. This approach can be critical for developing decision support tools and policy development. By continuously updating data, BioDT will provide real-time predictions of biodiversity patterns and processes through interactive maps and summaries. The consortium leverages existing technologies and data from major research infrastructures (GBIF, eLTER, DiSSCo, and LifeWatch ERIC) to achieve this goal.
A screenshot of the BioDT homepage.
The project’s impact extends to addressing critical issues, including impact of environmental change on species and ecosystems, food security, and the implementation of the EU and international policies. The project contributes to the UN Sustainable Development Goals 2 (Zero Hunger), 3 (Good Health and Well-being), 13 (Climate Action), and 15 (Life on Land).
BioDT develops prototype Digital Twins for biodiversity conservation
In order to test its modelling system, BioDT is developing ten prototype digital twins (pDTs) focused on species and ecosystems of high conservation and policy concern, such as invasive species, pollinators and grasslands. The pDTs are divided into four main groups:
Species Response to Environmental Change: focus on the interactions between species and ecosystems. By incorporating temporal dynamics rather than pure space-for-time substitutions, BioDT improves temporal predictions and accuracy. Different sources of uncertainty are quantified using extensive geographic data combined with high-resolution time-series data in a single modelling framework.
Genetically Detected Biodiversity: addressing food security and challenging environments by integrating genomic methods based on DNA data with traditional biodiversity data. These twins focus on crop wild relatives and other genetic resources for farming and food security, as well as DNA-detected biodiversity in poorly known habitats.
Dynamics of Species of Policy Concern: applying modelling and high-performance computing to invasive and alien species recognised at EU and national levels. This twin involves using current species occurrence data, and tackling crucial environmental conditions and invasive effects on native taxa and ecosystems.
Influence of Species Interactions: predicting disease outbreaks using vector species and exploring the patterns and processes of insect pollinators. Work on interaction twins involves further development of data exchange models and establishing temporal historic reference points through digitisation of collection specimens.
A screenshot from the BioDT homepage showing the purposes of prototype digital twins.
The pDTs aim to make essential datasets, best practices, expertise, and lessons learned available and ready for use to researchers and research infrastructures in implementing the use cases, while providing.
The pDTs test the models predictive performance and data availability scenarios, and apply them to address biodiversity challenges through scenario simulations, predictions, and biomonitoring methods. This iterative approach aims to integrate and compare the predictive performance of various modelling approaches, stimulating the development of next-generation prototypes.
Building Biodiversity Digital Twins: a BioDT collection of scientific papers
To further advance the development and reliability of Biodiversity Digital Twins, the BioDT team has produced 10 scientific papers, compiled in the “Building Biodiversity Digital Twins” issue of the open-science scholarly journal Research Ideas and Outcomes (RIO).
“The collection offers an in-depth understanding of the conceptual and technical advancements achieved towards developing digital twins for a wide range of biodiversity topics. Through the BioDT project, we are enabling a broad audience to interactively understand and predict biodiversity changes across space and time.” says Gabriela Zuquim, Scientific Coordinator at CSC for the BioDT project
The collection serves as a centralised access point to project outputs by the BioDT initiative. Publication of rather unconventional and not traditionally published research outputs is in fact amongst the unique features of the open-science RIO journal. Another feature is the possibility of individual publications to be mapped to the SDGs they contribute to, thereby further underlining their significance.
A conceptual diagram of a digital twin prototype from this paper. The core aim of this project is to test the feasibility of generating essentially real-time updating predictions on bird spatiotemporal distributions and singing activity by combining prior information, based on long-term monitoring data with continuously accumulating new information provided by citizen scientists.
In the case of BioDT, RIO has made it possible for the project team to illustrate the process of prototyping Biodiversity Digital Twins in the format of a peer-reviewed scientific article, thereby ensuring its discoverability, credibility, citability, reusability and long-term public availability. By opting for this transparent approach to sharing their scientific work that has standed the rigour of formal scientific review, the BioDT project ensures that future scientists can make better and more efficient use of the models developed by the consortium’s researchers, data, and cutting-edge technology.
For example, one publication describes the HONEYBEE Prototype Digital Twin. The prototype will allow, after the ongoing calibration with land use and hive weight data, predictions of honeybee population dynamics, mite infestation and honey production. The model was developed based on a previously developed one, devised to simulate foraging of a single bee colony. By using the prototype digital twin, users can interactively apply the model on various time and geographic scales ranging from local sites to whole regions or even country level. Thus, it can become an essential tool for the assessment of the viability and productivity of honey bee colonies around Germany, regardless of the specificity of landscapes and management strategies.
Overview of the prototype HONEYBEE-pDT
Our vision is that the assessment can even be run to take into account different climate-change scenarios. The publication also provides guidelines to potential users of the prototype. The authors of the paper, led by Dr Jürgen Groeneveld (Helmholtz Centre for Environmental Research – UFZ, Germany) reminds that despite honey bees “being a managed species, they are severely affected by climate change, emerging parasites and diseases, modern agricultural land use and possibly inappropriate beekeeping practices”, while going on to cite worrying data about the trends in both Europe and the USA.
Similarly, other publications already available from the collection address equally crucial and pressing issues with impact on a global scale, including disease outbreaks, crop management, invasive species, bird and vegetation dynamics.
“The Building Biodiversity Digital Twins collection of project papers suited our needs perfectly,” said Dmitry Schigel, GBIF Scientific officer and a coordinating editor of the collection. “The project team agreed to capture the project’s iterations and reveal our two-thirds stage prototypes two years into the project with one more to go. The innovative platform that the Pensoft’s RIO journal provides lets us describe our progress in a less formal but still peer-reviewed setting. Thanks to the efficient work of the author teams, reviewers and co-editors, this special issue came together quickly and now enables our prototype digital twin teams to attract and process feedback from broader audiences”
As a growing number of species face extinction, both researchers and the general public tend to focus on attractive, well-known and charismatic fauna and flora. But what about the species that have disappeared from scientific recognition altogether?
Research published in our open-access journal Nature Conservation sheds light on how historic taxonomic errors and misinterpretations have led to the disappearance of many species from science’s radar, highlighting the crucial role that taxonomy and natural history collections (NHCs) can play in rediscovering and conserving biodiversity.
Many species that were described long ago have been overlooked due to erroneous synonymisation, a process whereby one species is mistakenly classified under another’s name, generally because of the scarce number of specimens available. These species, the authors now refer to as ‘long-lost synonymised species,’ can fall out of awareness for decades, even centuries.
The 20th century saw a general trend of ‘lumping’ species together, reducing the number of recognised taxa, especially within well-known vertebrate groups. Taxonomic inertia – the persistence of outdated classifications – has caused many species to remain under-recognised, with their conservation statuses too often overlooked. This problem is described among better-known vertebrates, but is also likely present in some of the best studied invertebrates.
The importance of natural history collections
More than simply relics of the past, natural history collections provide a contemporary and essential resource for taxonomists working to untangle these historical errors. Museum specimens allow scientists to re-examine old classifications, using modern tools and methods to correct mistakes and uncover new taxa. Recent advances in ‘museomics’ – the study of genetic material from museum specimens – have opened new possibilities for species identification and conservation.
Leopardus geoffroyi. Credit: diegocarau via iNaturalist.
Such breakthroughs have led to the revalidation of the Neotropical genus Leopardus and the African wolf, Canis anthus, which had been synonymised for decades. Without natural history collections and the associated holotypes, the nomenclature of these species might have remained obscured, and their conservation needs unmet or delayed.
Natural History Collections and Museomics
Pensoft recently launched a new journal titled Natural History Collections and Museomics(NHCM).The publication comes at a pivotal moment in which taxonomists face the challenges of dwindling resources and fewer scientists entering the field. Through the publication of important open-access research, the journal aims to play a crucial role in bridging the gap between traditional taxonomy and modern conservation efforts.
Furthermore, by highlighting the essential role of taxonomy and natural history collections, NHCM will support the rediscovery of species long lost to science and help to conserve the world’s forgotten biodiversity. As the field of museomics grows, so too does the hope of rediscovering species that have been hidden in plain sight. The new journal already benefits from a competent and varied editorial board, including two of the authors of the Nature Conservation paper, Franco Andreone and Spartaco Gippoliti.
If the scientific community rally behind taxonomy and natural history collections, ensuring these vital tools are integrated into future biodiversity assessments, we can hope to preserve not just the species we know, but those we have forgotten.
Original source:
Gippoliti S, Farina S, Andreone F (2024) Lost species, neglected taxonomy, and the role of natural history collections and synonymization in the identification of the World’s forgotten biodiversity. Nature Conservation 56: 119-126. https://doi.org/10.3897/natureconservation.56.132036
