Author: Pensoft Editorial Team

“Oscar describes Oscar”: Interview with Oscar Lasso-Alcalá, Pt 2

“Working in science in a country under these conditions, and getting to publish the results of the investigations in high-level scientific journals such as ZooKeys, is an act of “true heroism”.

Oscar Miguel Lasso-Alcalá, MSc. is a Spanish-Venezuelan ichthyologist. This summer, his team described a new species of Oscar fish in the journal ZooKeys.

In this second part of his interview, he tells us about the challenges in his work and shares the story behind the new cichlid’s name. You can find Part 1 of the interview.

What did you find to be the biggest challenge?

Throughout the past seven years, the description of this species has been a real challenge. Our group of researchers knew from the beginning that it was going to be a difficult job.  However, we never imagined the magnitude of the problems or challenges we would encounter.

We had to study the specimens from the Orinoco River basin in Venezuela and Colombia, and rivers from the hydrographic basin of the Gulf of Paria in Venezuela, which were within our reach, in the main scientific collections of fishes in Venezuela. Similarly, we studied the specimens from the Amazon River basin in one of the main collections in Brazil. We studied the traditional external morphology (morphometric characters, or the body, and meristic measurements, or the number of structures or parts such as scales, fins, etc.) and their coloration, as well as their internal morphology, that is, the study of structures of their skeleton, with the use of high-definition radiographs, where we found the main differences with other species.

A novel technique was the study of the shape of the otoliths, or “ear stones”, a technique not used before in the study of this group of fish. That is why I mentioned before that we also made some great scientific discoveries.

In addition to the long and meticulous laboratory work, we also had to conduct field work, not only to capture new specimens for the morphological study, but also for the genetic and molecular study, a new methodology that has become popular in recent years as a way to support taxonomy and systematics in the description and classification of species.

For this latest work, we also relied on a recent study in this area of ​​research, carried out by the genetics specialists on our work team. This means our research was based on what is currently called “integrative taxonomy”, which is the sum of different techniques, methods, and technologies, at the service of achieving our goal: the description of a new species for science and for the world.

Many other difficulties came up along the way, which is why this research took over seven years to be published. Normally, researchers cannot focus 100% of their time on one single research, and workloads fluctuate. Sometimes we think that a greater number of specialists would help distribute the workload evenly or that getting input from others with different fields of experience, sometimes specialized, would help enrich the work, but that also makes it more difficult to reach agreement. Reaching perfection is never possible, and it took a long time for us to reach a level of results that was both acceptable to all and well accepted in the field of taxonomy and systematics.

One of the biggest challenges was purely financial. While we had some funds from Brazilian research support organizations and two universities, this was not the case in Venezuela, a country plunged in a serious political, social, economic, and humanitarian crisis.

Working in science in a country under these conditions, and being able to publish your results in high-level scientific journals, including ZooKeys, is an act of “true heroism”, as my brother José Antonio often says when cheering on my publication.

How come you named it after Ivan Mikolji?

People who do not know about the great work carried out by river explorer Ivan Mikolji might wonder about that, but the thousands of people, connoisseurs and followers of his work are absolutely clear on the justification for this appointment.

Find more about Ivan Mikolji and his work on his website: https://mikolji.com/.

In addition to being an excellent professional explorer, author, underwater photographer, audiovisual producer and even plastic artist, he is a tireless and enthusiastic disseminator of the biodiversity and natural history of freshwater fish in Venezuela and Colombia.

His work has contributed greatly to the knowledge and conservation of the aquatic ecosystems of both countries. His motto is: “You cannot preserve something that you don’t know exists.”

He has made dozens of photography and art exhibitions in Venezuela, Mexico and the United States, as well as award-winning documentaries on the Orinoco River and its biodiversity that have acquired millions of views.

Mikolji has also inspired thousands of “conservationist” aquarists, as a judge in a worldwide movement called “Biotope Aquariums,” where people try to simulate, as much as possible, the ecosystems and aquatic biodiversity of their places of origin, for the conservation of their local biodiversity.

In addition, his educational work further includes the “Wild Aquarium”, a new movement and methodology, where he recreates in the same place (in situ), a “Biotope aquarium”, helping local communities (children and adults) learn about local aquatic ecosystems and biodiversity and their conservation.

In addition to his great artistic, informative, and educational work, with the enormous data accumulated in more than 15 years of work and field observations, in the recent years, he has participated in different research projects, publishing books and numerous scientific articles, some of them with us. For this reason, in 2020, he was appointed Associate Researcher of the Museo de Historia Natural La Salle (Caracas) of the Fundación La Salle de Ciencias Naturales, in Venezuela. By the way, we are planning research that we hope to announce soon in various publications.

Regarding Astronotus mikoljii, our good friend and now colleague Ivan Mikolji, was the one who initially proposed that we describe this species that he loves so much. He selflessly supported all the authors throughout the study in diverse ways, even in the field work in Venezuela. Ivan helped us in the search for equipment and materials, in the search for information, in the photographic work, and now in the dissemination of this study. For this reason, the article, in just one week, achieved more than 4,500 downloads, both on ZooKeys and ResearchGate web platforms, a true record for a study of this type.

Most importantly, throughout these years, Ivan has always encouraged us not to lose our course and objective, even in the most difficult moments. After years of knowing him, we have cultivated an excellent friendship. This is why we decided that it was just and necessary to recognize his work, help, companionship, and friendship, naming this beautiful and beloved species in his honor.

Photos by Ivan Mikolji.

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You can find Part 1 and continue reading with Part 3.

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Follow the ZooKeys journal on Twitter and Facebook.

“Oscar describes Oscar”: Interview with Oscar Lasso-Alcalá, Pt 1

“As an ichthyologist, I feel pride in collaborating and contributing to science, nationally, regionally, and globally.”

Oscar Miguel Lasso-Alcalá, MSc., is a Spanish-Venezuelan ichthyologist with undergraduate studies in Oceanography, Fishing Technology and Aquaculture, and Postgraduate studies in Agricultural Zoology and Estuary Ecology. He has worked in diverse areas such as taxonomy, biology, ecology, freshwater, estuarine, and marine fisheries and management. For 33 years, he has participated in more than 70 research projects and published over 250 studies. He has made more than 250 scientific expeditions to different regions of Venezuela and six other countries in America. He has dedicated much of his work to studying, educating, and managing introduced species and their invasions.

This summer, Oscar’s team described a new species of cichlid fish from northern South America in our journal ZooKeys. We spoke to him to find out how they came to the discovery and what it means to him.

When did you discover the new species?

Although some taxonomists have specimens that they believe, or have preliminarily diagnosed, to correspond to different, undescribed or new-to-science species (in my case I know of around 15 species I’ve diagnosed as new), Astronotus mikoljii was different. We did not discover that it was a new species overnight.

Normally, the process of discovering a new species takes a long time and a lot of work. It is not an easy task. First, you need to analyze the external and internal morphology. You study the color pattern and other characteristics and compare them to those of known, described species that are akin or similar to the one being studied, looking for the main differences. It is also very important to carry out exhaustive documentary and bibliographical research, to learn about all related species that have been previously described. Then, if there is complete certainty that it’s a different species that has not been previously described and published, there’s an entire process of formal description of the new species.

Did you immediately recognize it as a new species?

Absolutely not. Mikolji’s Oscar is difficult to differentiate externally. The first researcher who evidenced the main differences of Astronotus ocellatus (a binomial as it was previously known) from the Orinoco River basin, was the Swedish ichthyologist Sven Oscar Kullander, curator at the Swedish Museum of Natural History in Stockholm. He is one of the greatest specialists in the world on species of the Cichlidae family, to which the species we were studying belongs. This was first published in 1981, followed by his 1983, 1986, and 1989 studies (including his Ph.D. thesis) and later in other studies of his published in 2003 (all cited in our recent article published in the ZooKeys journal).

Likewise, my brother, the Spanish and Venezuelan ichthyologist Carlos Andrés Lasso, currently a researcher at the Instituto de Recursos Biológicos Alexander von Humboldt of Colombia, with more than 40 years of experience, also recognized this species from the Orinoco River as different from the one present in the Amazon River basin. In 18 different studies carried out in Venezuela and Colombia (all cited in our article), he records this species as Astronotus cf ocellatus (“cf” means the species name is yet to be confirmed), or directly as Astronotus sp., already assuring that it was a different species and new to science.

We are letting the world know a defined and individual species exists.

With this background, we responsibly acknowledge that it was Sven and Carlos who discovered Mikolji’s Oscar, and not us. Our credit and recognition are given for the process of describing the new species and for its publication. It is very important to clarify here that the discovery of a new-to-science species and its description (and publication) are two different facts, situations, and processes. However, in our study, we discovered some very important morphological characteristics, as well as genetic information, that allowed the differentiation of this species from those already known.

What was most exciting about this finding?

 As an ichthyologist, I feel pride in collaborating and contributing to science, nationally, regionally, and globally. I feel satisfaction every time I share my research results at a scientific event or meeting (congress, symposium), or publish them in a scientific book (or part of it) or in a popular journal. This is not just an ordinary job for me, since I really like to investigate, and almost always have a lot of fun with this activity. As I have said in many of the interviews that I have had throughout my over 30-year career: to me, it’s not a job, it’s a way of living.

It fills me with great satisfaction to have the opportunity, more than 40 years after first meeting these Oscars, to be able to study them, describe them, and give them the name and place they deserve in science, and in the world.

The description of a species which is new to science is something really special, not only for me and my colleagues in this study, but for the vast majority of taxonomists. This is not only due to the fact that our last names will always appear next to the scientific name, but also to the fact that we are letting the world know a defined and individual species exists. By adding another species, we increase the known biodiversity of a country, a region, and the world, and therefore, we demonstrate that biodiversity must be studied, managed, conserved, and used rationally and independently.

Astronotus mikoljii is a very charismatic species, highly appreciated, valued, and loved in the aquarium hobby.

I remember that as a kid (between 7 and 13 years old), in the aquariums built at home by two of my older brothers, José Antonio and Carlos, to whom I largely owe being an ichthyologist today, we had some specimens of Oscars from Orinoco. We bought them in a local aquarium store in Caracas and took care of them, loved them like little children. I remember that in addition to feeling happily identified with the name (Oscar), they felt like real pets. They “got excited” when they saw us, took food directly from our hands without biting our fingers, and even let themselves be caressed, as if they were docile puppies or kittens. They were my favorite fish.

Years later, as an adult, beginning my research years, in the late 80’s and early 90’s, even with aquariums in our house (I had more than 20 in my good time as an aquarist), we had new specimens of these Oscars. This time, they were specimens captured by my brother and me, in the floodplains of the Orinoco River (Llanos de Apure), where for more than five years we studied the biology and ecology of some 200 local fish species, many of them unique in the world just like Mikolji’s Oscar. From that field study came the doctoral thesis of my brother Carlos, and the undergraduate theses of half a dozen other researchers, including mine.

It fills me with great satisfaction to have the opportunity, more than 40 years after first meeting these Oscars, to be able to study them, describe them, and give them the name and place they deserve in science, and in the world. It also fills me with deep satisfaction, having the opportunity to describe a “large-sized” species that was apparently already known, both locally and nationally (for its importance in fishing), as well as internationally in the world of aquarism. That is why, as I shared our study and finding on social media, I wrote: “Oscar describes the Oscar: Mikolji’s Oscar.“

We are also extremely grateful to the many people who helped us and collaborated with us in this study, by collecting new specimens in the field, reviewing fish collections under their care, taking X-rays, searching for specialized bibliographies, studying the native or indigenous names, and even editing and publishing the article in Zookeys journal.

Likewise, it was exciting to share this research experience with colleagues from Brazil (co-authors of this study, just like me), who trusted us and our meticulous work.

Photos by Ivan Mikolji

The story continues with Part 2 and Part 3.

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Follow the ZooKeys journal on Twitter and Facebook.

Naturalists can mediate silent plankton invasions

Plankton can easily spread between water bodies on hydrobiological instruments if naturalists use inadequate biosecurity treatments in their work.

Homo sapiens is not only a great (perhaps the best) candidate for the world’s most invasive species award. Humans, due to their actions and technological wonders, are also at the forefront of good vectors for organismal dispersion. Can we break this inglorious streak?

“Because humans will continue to interact with terrestrial and aquatic environments, it is impossible to stop the human-aided dispersal of organisms completely. The best we can do is minimise the risk of human-mediated organism dispersal events by implementing adequate biosecurity methods in our activity” explains Dr Wejnerowski from Adam Mickiewicz University (Poland). 

Plankton sampling using net. Photo by Sandra Wejnerowska

“We should be aware that all our activities can affect biodiversity, and adequate biosecurity treatments should be applied whenever the risk of inadvertent spreading of organisms is non-zero” adds Dr Marcin Krzysztof Dziuba from the University of Michigan (United States of America).

Recently, a team of researchers from Adam Mickiewicz University, Istanbul University (Turkey), Åbo Akademi University (Finland), and the University of Michigan empirically proved that plankton net – a basic hydrobiological instrument of almost every aquatic scientist and water manager – is a good vector for the dispersal of various phyto- and zooplankton taxa, including species of high invasive potential. Nuisance, bloom-forming, also toxic filamentous cyanobacteria are efficient hitch-hikers, and they are able to successfully compete with native residents in the new environment.

Instructions for US citizens to avoid spreading invasive species during lake recreation. Photo by Marcin Krzysztof Dziuba

Apart from identifying hitch-hiking plankton on the net and its fate in the new environment, the paper they published in the journal NeoBiota also describes the most commonly used biosecurity treatments that naturalists worldwide use to prevent plankton spread between water bodies via the net.

Their findings sound disturbing: naturalists use inadequate or questionable biosecurity treatments. As revealed by the survey data, only 9% of plankton samplers clean plankton nets using disinfectant liquids after sampling, while a majority of people either rinse the net with distilled or tap water, immerse the net with an open outflow in the water body and let it dry, or do not care about the cleanness of the net after sampling at all.

Exemplary photos of some phyto- (A – Limnothrix redekei, B – Planktothrix agardhii, C – Pseudanabaena limnetica, D – Melosira varians, E – Desmodesmus armatus, F – Asterionella formosa, G – Tetradesmus obliquus) and zooplankton ( H – Keratella cochlearis f. typica) hitch-hikers on the plankton net. Micrograph I shows the plankton biomass on the surface of the plankton net after immersing the net with an open outflow in the water body (inadequate biosecurity treatment). Photos by Tumer Orhun Aykut and Łukasz Wejnerowski. Identification of organisms by Aleksandra Pełechata and Marcin Krzysztof Dziuba.

“Indeed, the reality presented in the paper is unsettling. It worries me when I think of how often I have accidentally facilitated dispersion of nuisance plankton and how much I contributed to the invasion of plankton taxa into new water bodies when using inappropriate biosecurity treatments in my fieldwork,” admits Dr Wejnerowski, and adds: “We do not mean to reinvent the wheel; the problem of aquatic organism dispersal through hydrobiological instruments is already known. For years, it was neglected despite some recalls from the scientific community. It comes back like a bad penny because it needs a complex solution from the society of aquatic naturalists. It should happen. After all, naturalists are a human line of defence, protection and rescue for nature.”

Research article:

Wejnerowski  Ł, Aykut TO, Pełechata A, Rybak M, Dulić T, Meriluoto J, Dziuba MK (2022) Plankton hitch-hikers on naturalists’ instruments as silent intruders of aquatic ecosystems: current risks and possible prevention. NeoBiota 73: 193-219. https://doi.org/10.3897/neobiota.73.82636

Plants quick to let their flowers fade for protection, show new field experiments and microbiome

Microbes growing on flowers have adverse effects on their fruit yields. This is why plants are quick to shed their flowers, reveals a new study involving both field experiments and plant microbiome analyses.

The present study looked into the wild ginger in Japan (Alpinia japonica, Zingiberaceae). Its flowers open in the morning and wither around sunset, as many one-day flower plants do.
Photo by Shoko Sakai.

Microbes growing on flowers have adverse effects on their yields. This is why plants are quick to shed their flowers, reveals a new study involving both field experiments and plant microbiome analysis.

The findings – made by a joint team of researchers from the Centre for Research on Ecology and Forestry Applications (CREAF, Spain) and Kyoto University (Japan) – are published in the open-access scholarly journal Metabarcoding and Metagenomics.

Scientifically speaking, flowers are a reproductive structure of a plant. Unlike mammals, though, perennial plants develop those de novo every season and only retain them for as long as needed.

While a few earlier studies have already looked into the variation in flower lifespan among species, they were mainly concerned with the tradeoff between plants spending energy on producing and maintaining their flowers, and the benefit they would achieve from retaining their reproductive organs.

Most flowers complete their role and wither or drop within only several days or even less.
Photo by Shoko Sakai.

Prior to the present study, however, the team found another perspective to look at the phenomenon: why did plants invest their energy –  even if the ‘cost’ was minimal – to produce fragile flowers that would wither in a matter of days, rather than investing a bit more of it to produce a lot more durable ones, thereby increasing their reproductive success?

“Interestingly, flower lifespan is negatively correlated with temperature; the hotter the environment where they bloom, the shorter the period a plant retains them. The phenomenon has been known for a long time.

Then, at some point, I came up with the hypothesis that antagonistic microbes, such as bacteria and fungi growing on flowers after the flower bud opens, must be the driver that shortens the lifespan of a flower. I doubted that it was a coincidence that microbes grow faster in higher temperatures,”

comments Shoko Sakai, author of the present study.

Flowers provide various habitats for microbes. They attract pollinators by secreting nectar, which is rich in sugars, and often contains other nutrients, such as amino acids and lipids. The stigma is a germination bed for pollen grains connected to a growth chamber for pollen tubes. It maintains humidity and nutrients necessary for pollen tube growth. Not surprisingly, abundance of the microbes increases over time on individual flowers after it opens.

Before jumping to their conclusions, the scientists set out to conduct field experiments to see what microbial communities would appear on flowers if their longevity was prolonged.

To do this, they took microbes from old flowers of wild ginger (Alpinia japonica) – a species found in Japan and blooming in the early summer when the hot and humid weather in the country is ideal for microbial growth. Then, they transferred the microbes to other wild ginger plants, whose flowers had just opened.

In line with their initial hypothesis, the research team noted that the plant produced significantly fewer fruits, yet there were no visible symptoms on the flowers or fruits to suggest a disease. However, an analysis of the plants’ microbiomes revealed the presence of several groups of bacteria that were increasing with time. As these bacteria can also be found on the flower buds of flowers that have not been treated, the bacteria is categorised as “resident” for the plant.

“So far, flower characteristics have mostly been studied in the context of their interactions with pollinators. Recent studies have raised the question whether we have overlooked the roles of microbes in the studies of floral characteristics.

For example, flower volatiles – which are often regarded as a primary pollinator attractant – can also function to suppress antagonistic microbes. The impacts of microbes on plant reproductive ecology may be more deeply embedded in the evolution of angiosperms than we have considered,”

Sakai concludes.
Flowers have various organs rich in nutrients, and each organ harbours a distinct microbiome. Flower visitors transfer microbes between and within flowers.
Photo by Shoko Sakai.

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Research article:

Jiménez Elvira N, Ushio M, Sakai S (2022) Are microbes growing on flowers evil? Effects of old flower microbes on fruit set in a wild ginger with one-day flowers, Alpinia japonica (Zingiberaceae). Metabarcoding and Metagenomics 6: e84331. https://doi.org/10.3897/mbmg.6.84331

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Follow the Metabarcoding and Metagenomics (MBMG) journal on Twitter and Facebook (@MBMGJournal).

Venomous! New pit viper discovered in Jiuzhaigou National Nature Reserve, China

The discovery was published in the open-access journal ZooKeys as part of a new molecular phylogenetic analysis of the Asian pit vipers.

Jiuzhaigou National Nature Reserve, a World Heritage Site, lies in the transition zone from the eastern edge of the Qinghai-Tibet Plateau to the Sichuan Basin in Sichuan Province, China, and occupies an area of 651 km2. The reserve is covered with well-preserved original forests, and numerous alpine lakes. Beautiful and picturesque, it is home to some rare animals, such as the Giant Panda (Ailuropoda melanoleuca) and Golden Snub-nosed Monkey (Rhinopithecus roxellana).

Landscape in Jiuzhaigou National Park. Photo by Jie Du

The herpetological di­versity, in contrast to the mammals, is relatively low in the area due to the harsh alpine environment. To find out more about it, and to investigate the post-earthquake ecological system in the region, a group of researchers conducted a series of investigations in Jiuzhaigou National Nature Reserve. During their herpetological surveys, they collected some specimens of Gloydius, a genus of venomous pit vipers endemic to Asia, from Zharu Valley.

After running morphological and phylogenetic analyses, the scientists found out that these specimens in fact belonged to a yet-to-be-described species.

Holotype of Gloydius lateralis. Photo by Sheng-chao Shi.

“The new species is morphologically similar, and phylogenetically closely related to G. swild, another recently described species from Heishui, Aba, Sichuan, but differs from it by having larger eyes (related to the head) and a continuous regular brown stripe on each dorsolateral side of the body,” explained the corresponding author, Dr Jingsong Shi.

“Thus, we named it after its unique color pattern: Gloydius lateralis.”

Holotype of Gloydius lateralis. Photo by Sheng-chao Shi

The newly described snake feeds on small mammals, such as mice, and “is active on sunny days by the roadside in a hot, dry valley”, the researchers write in their study, which was published in the open-access scientific journal ZooKeys.

“The discovery of G. lateralis provides new insights into the diversity and the distribution patterns of Asian pit vipers”, they write, suggesting that the formation of the Qinghai-Tibet Plateau might be one of the key factors to the geographical isolation of the alpine pit vipers in southwest China.

Landscapes in Jiuzhaigou National Park. Photo by Jie Du

Jiuzhaigou National Nature Reserve, where G. lateralis was found, receives millions of tourists every year. “The only known habitat of the new species is Zharu Valley, and it is now under touristic development,” the researchers point out. “Thus, warning signs are still needed to remind visitors to watch out for the venomous pit viper, since this and another pit viper species, Protobothrops jerdo­nii, are often found in grass or bushes on both sides of roads.”

Snakes’ thermoregulation needs make them more prone to vehicle collisions, which is why the research team highlights the necessity to remind drivers to slow down in order to avoid road killings.

Original source:

Zhang M-H, Shi S-C, Li C, Yan P, Wang P, Ding L, Du J, Plenković-Moraj A, Jiang J-P, Shi J-S (2022) Exploring cryptic biodiversity in a world heritage site: a new pitviper (Squamata, Viperidae, Crotalinae) from Jiuzhaigou, Aba, Sichuan, China. ZooKeys 1114: 59–76. https://doi.org/10.3897/zookeys.1114.79709

Lizards go north: Balkan wall lizard population found all the way in the Czech Republic

The northernmost population of the Balkan lizard, recently discovered in the Czech Republic, has proven to be genetically unique and variable.

The Czech Republic is a zoologically well-studied area, and its reptile fauna is not very rich. Therefore, the recent discovery of a new reptile species for the country, the Balkan wall lizard (Podarcis tauricus), came as a big surprise. This lizard inhabits areas of the Central and Western Balkans as far as Crimea, with isolated areas of occurrence in Hungary and northern Romania, so how did it get as far north as the Czech Republic? Fortunately, the genetics in much of the lizard’s range are relatively well-studied. Finding out where lizards from the Czech Republic fit genetically could reveal the origins of this northernmost population.

Podarcis tauricus in the wild – Váté písky near Bzenec, Czech Republic.

An analysis published by Czech herpetologists in the journal Biodiversity Data Journal shows that the lizards from the Czech population are genetically variable; therefore, the population was not established by the introduction of a single gravid female.

Geographical distribution of Podarcis tauricus. The green arrow shows the northernmost known locality (Váté písky, Czech Republic).

The population also has genetic “markers” not yet found elsewhere, although it is clearly related to populations from the Central and Western Balkans and Hungary. These findings suggest that this could be an original, possibly relict population.

Haplotype network, designed from 24 haplotypes of the cytb locus from 167 individuals of Podarcis tauricus and Podarcis gaigeae (Psonis et al. 2017; this study). Colours correspond to the country of the specimen’s geographical origin and each circle corresponds to a haplotype. The circle size is proportional to the number of individuals with the same haplotype. The number of individuals per haplotype is indicated. Due to the unequal size of cytb sequences from Psonis et al. (2017), only a fragment of 257 bp which was common for all 167 sequences was used for the haplotype network reconstruction. For this region of cytb locus, the sequences of our individuals from Czech Republic are identical to 18 individuals from Albania, Hungary, Kosovo and Serbia.

However, we cannot rule out recent introductions or spontaneous northward dispersal of the lizard associated with global climate change. Exotic species of animals and plants appear in the Czech Republic through various routes and tracing their origin is not always easy. Both intentional and unintentional introductions have been recorded for some reptiles, while some previously southern vertebrate and invertebrate species spread to the north spontaneously.

Portrait of Podarcis tauricus

The first genetic data on the origin of the northernmost population of the Balkan wall lizard suggest that the lizard can spread to the north naturally; however, further investigations are needed to support this tentative conclusion. 

Research article:

Rehák I, Fischer D, Kratochvíl L, Rovatsos M (2022) Origin and haplotype diversity of the northernmost population of Podarcis tauricus (Squamata, Lacertidae): Do lizards respond to climate change and go north? Biodiversity Data Journal 10: e82156. https://doi.org/10.3897/BDJ.10.e82156

Top new species discoveries for the first half of 2022

The diversity is impressive, but what is even more amazing is how much more remains undiscovered.

In the world of biodiversity science, 2022 started with some great discoveries and a lot of hope. Here at Pensoft, we get to see a new species (or more!) make an appearance into the scientific world almost every day. The diversity is impressive, but what is even more amazing is how much more remains undiscovered.

With the first half of the year already behind us, here are the stellar new species that took the world by storm as soon as we published them.

The magical fairy wrasse

This rainbow-coloured fish is called Cirrhilabrus finifenmaa, or Rose-Veiled Fairy Wrasse, and it was found in the Maldives’ reefs. It can live 160 to 500 feet beneath the ocean’s surface in unexplored coral ecosystems dubbed “the twilight zone”. 

It was discovered within California Academy of Sciences‘ Hope for Reefs initiative, which is aimed at better understanding and protecting coral reefs around the world.

“Nobody knows these waters better than the Maldivian people,” says senior author and Academy Curator of Ichthyology Luiz Rocha. “Our research is stronger when it’s done in collaboration with local researchers and divers.”

Apart from its striking appearance, Cirrhilabrus finifenmaa also gained popularity as the first new-to-science species to be described by a Maldivian scientist.

“It has always been foreign scientists who have described species found in the Maldives, even those that are endemic, without much involvement from local scientists, says study co-author and Maldives Marine Research Institute biologist Ahmed Najeeb. “This time it is different.”

It is also one of the first species to have its name derived from the local Dhivehi language, ‘finifenmaa’ meaning ‘rose’, a nod to both its pink hues and the island nation’s national flower.

This beautiful fish is already being exploited through the aquarium hobbyist trade, a fact described as “unsettling” by the people who discovered it.

Published in ZooKeys.

The Taylor Swift millipede

How often is it that a millipede makes top news headlines? Well, Nannaria swiftae sure did.

Scientists Derek Hennen, Jackson Means, and Paul Marek, at Virginia Tech, U.S., described the new species in April, naming it after singer-songwriter Taylor Swift. “Her music helped me get through the highs and lows of graduate school, so naming a new millipede species after her is my way of saying thanks,” Derek Hennen says, admitting he has been her fan for years.

N. swiftae joins 16 other new species of twisted-claw millipedes described from the Appalachian Mountains of the United States. To find them, researchers traveled to 17 US states, checking under leaf litter, rocks, and logs. They then sequenced the DNA of the species they found and described them scientifically. They looked at over 1800 specimens collected on their field study or taken from university and museum collections!

These little-known invertebrates are somewhat tricky to catch, because they tend to remain buried in the soil, sometimes staying completely beneath the surface.

Most twisted-claw millipedes live on the forest floor, where they feed on decaying leaves and other plant matter. They also have a valuable role as decomposers: breaking down leaf litter, they release their nutrients into the ecosystem.

Published in ZooKeys.

The Greta Thunberg frog

Swedish climate activist Greta Thunberg has been namesakes with a frog for half a year now. In 2018, Rainforest Trust celebrated its 30th anniversary by hosting an auction offering naming rights for some new-to-science species, including Pristimantis gretathunbergae, a black-eyed rainfrog from in eastern Panama.

The undisclosed auction winner wanted to name the frog in honor of Thunberg and her work in highlighting the urgency in preventing climate change. She has impressed global leaders and her work is drawing others to action for the climate.

The international team that discovered the new rainfrog was led by Abel Batista, Ph.D. (Panama) and Konrad Mebert, Ph.D. (Switzerland). They found the frog on Mount Chucanti, a sky island surrounded by lowland tropical rainforest in eastern Panama. Reaching its habitat in the cloud forest required access via horseback through muddy trails, hiking up steep slopes, by-passing two helicopters that crashed decades ago, and camping above 1000 m elevation.

Unfortunately, the frog’s remaining habitat is severely fragmented and highly threatened by rapid deforestation for plantations and cattle pasture. Rising temperatures are another threat as they could destroy its small mountain habitat. The Mount Chucanti region already has lost more than 30% of its forest cover over the past 10 years, and the scientists insist that conservation of the remaining habitat is critical to ensure the survival of the frog.

Published in ZooKeys.

The chocolate frog

Since we’re on the subject of frogs, how about one that almost looks like it’s not real?

Instantly gaining popularity as Chocolate Frog, Synapturanus danta is a curious little frog that was recently discovered in the Peruvian Amazon. Local people had long known about this tiny, burrowing frog with a long snout; one local name for it is rana danta, “tapir frog”, for its resemblance to the large-nosed Amazonian mammal.

“These frogs are really hard to find, and that leads to them being understudied,” says Michelle Thompson, a researcher in the Keller Science Action Center at Chicago’s Field Museum and one of the authors of the study describing the frog. “It’s an example of the Amazon’s hidden diversity, and it’s important to document it to understand how important the ecosystem functions.”

While the frogs are hard to see, they’re not hard to hear. “We just kept hearing this beep-beep-beep coming from underground, and we suspected it could be a new species of burrowing frog,” says Thompson. “But how do we get to it?”

Local guides who were familiar with the frogs led the researchers to peatland areas– wetlands carpeted with nutrient-rich turf made of decaying plant matter. “After 15 to 20 minutes of digging and looking for them, I heard Michelle screaming, and to me that could only mean that she and David had found the first adult,” says Germán Chávez, a researcher at Peru’s Instituto Peruano de Herpetología and the study’s first author.

The researchers used the physical specimens of the frogs, along with the recordings of their calls and an analysis of the frogs’ DNA, to confirm that they were a new species. They named them Synapturanus danta – Synapturanus is the name of the genus they belong to, and danta is the local word for “tapir.”

Published in Evolutionary Systematics.

The fabulous flaming-red snake

This magnificent non-venomous snake, previously unknown to science, was discovered in Paraguay. It belongs to the genus Phalotris, a group of snakes from central South America noted for their striking coloration with red, black, and yellow patterns.

Jean-Paul Brouard, one of the involved researchers, came across an individual of the new species by chance while digging a hole at Rancho Laguna Blanca in 2014. Together with his colleagues Paul Smith and Pier Cacciali, he described the discovery, naming the new snake Phalotris shawnella.

The species name recognizes two children – Shawn Ariel Smith Fernández and Ella Bethany Atkinson – who were born in the same year as the Fundación Para La Tierra (2008). They inspired the founders of the NGO to work for the conservation of Paraguayan wildlife, in the hope that their children can inherit a better world.

This new Phalotris snake is particularly attractive and can be distinguished from other related species in its genus by its red head in combination with a yellow collar, a black lateral band and orange ventral scales with irregular black spots.

Only known from three individuals, this species is endemic to the Cerrado forests of the department of San Pedro in east Paraguay. Its extreme rarity led the authors to consider it as “Endangered”, according to the conservation categories of the International Union for Conservation of Nature (IUCN), which means it is in imminent danger of extinction in the absence of measures for its protection.

Published in Zoosystematics and Evolution.

New study in children with language deficits highlights importance of voluntary imagination in language evolution

Contrary to the common assumption, it is voluntary imagination rather than speech that appears to define the pace of combinatorial language evolution

Chimpanzees make use of cobbles to break nuts, but they do not modify them. Homo habilis was one of the earliest hominin species that intentionally modified cobbles to manufacture the crude, Mode One choppers. Homo habilis was only able to break out large flakes from a cobble; its voluntary control of its mental template was quite crude. Homo erectus, on the other hand, was able to break off much smaller flakes and produce the fine, symmetrical, Mode Two hand axes. Therefore, Homo erectus was most likely capable of finer voluntary control of its mental template. Image credit: Andrey Vyshedskiy.

Did the boy bite the cat, or was it the other way around? 

When processing a sentence with several objects, one has to establish ‘who did what to whom’. When a sentence cannot be interpreted by recalling an image from memory, we rely on voluntary imagination to construct a novel mental image in our mind. 

In a previous study, the team of Dr. Andrey Vyshedskiy, a neuroscientist from Boston University, USA, hypothesized that this voluntary imagination ability has fundamental importance for combinatorial language acquisition. To test the hypothesis, the researchers designed a voluntary imagination intervention and administered it to 6,454 children with language deficiencies (age 2 to 12 years). 

In that three-year study, published in 2021, the scientists concluded that children, who were engaged with the voluntary imagination intervention, showed 2.2-fold improvement in combinatorial language comprehension compared to children with similar language deficiencies. These findings suggested that language can be improved by training voluntary imagination and confirmed the importance of the visuospatial component of language. 

In his latest work, now published in the open-science scholarly journal Research Ideas and Outcomes (RIO), Dr. Vyshedskiy builds on these experimental findings to address the question of language evolution and suggest that evolutionary acquisition of language was driven primarily by improvements of voluntary imagination, rather than the speech apparatus.

“Chimpanzees and bonobos can learn hundreds of words. However, apes that know the names of objects, colors, and sizes are not capable of identifying ‘a large red pencil’ among multi-colored, multi-sized pieces of Lego, crayons, and pencils. This suggests that apes cannot mentally integrate color, size and objects together. Thus, voluntary constructive imagination must have been acquired by humans after our ancestors split from chimpanzees 6 million years ago.

Evolutionary development of voluntary imagination can be traced back through the evolution of stone tools, since the process of hand ax manufacturing – for example – requires voluntary imagination of a future tool. 

Apes do not manufacture stone tools, further confirming their imagination limitations. 

Our ancestors started manufacturing crude Mode One choppers about 3.3 million years ago – the first indication of voluntary imagination ability. Then, two million years ago, the emergence of symmetrical Mode Two hand axes with a long cutting edge indicates a major improvement of both tool design and voluntary imagination. Later, approximately 400,000 years ago, the Neanderthals began manufacturing even better Mode Three tools, demonstrating even better voluntary imagination ability. Finally,  about 70,000 years ago, Homo sapiens dramatically extended their tool repertoire as they came up with bows and arrows, needles with eyes, flutes, and composite artworks. This is when most researchers recognize that humanity acquired the modern voluntary imagination ability.”

Dr. Vyshedskiy explains.

Dr. Vyshedskiy proposes that this step-wise development of voluntary imagination – and not the speech apparatus per se – was the key factor underlying the acquisition of modern combinatorial language. 

There are several additional lines of evidence suggesting dissociation of articulate speech and voluntary imagination. 

Firstly, there is significant genetic and archeological evidence that modern speech apparatus was acquired 600,000 years ago, which is quite a long time before acquisition of modern voluntary imagination 70,000 years ago. 

Secondly, mirroring phylogenetic sequences, typical children develop articulate speech by their second year, two years before they acquire the voluntary imagination necessary to comprehend spatial prepositions, recursion, and complex fairy tales. 

Thirdly, speech is not an obligatory component of combinatorial language at all. If early humans had voluntary imagination, they could have invented sign language. All formal sign languages include spatial prepositions and other recursive elements. This has been evidenced in the 1970s, when the largest natural experiment of language origin to date reported on 400 Nicaraguan deaf children from two schools who spontaneously invented a new combinatorial sign language in just a few generations. This means that the capacities of the speech apparatus could not have been a limiting factor in the acquisition of modern combinatorial language at all. 

Fourthly, articulate sounds can be generated by gray parrots and thousands of other songbird species. However, these birds do not acquire combinatorial language. So, evolution of sound articulation is independent from and also a simpler process than improving voluntary imagination. 

In conclusion, on the basis of children studies, neurological observations, archeological findings, combinatorial sign language invention by Nicaraguan deaf children, and variety of sound boxes in birds, Dr. Vyshedskiy argues that the evolution of hominin speech apparatus must have followed (rather than led to) the improvements in voluntary imagination. 

Contrary to the common assumption, it is voluntary imagination rather than speech that appears to define the pace of combinatorial language evolution.

***

Original source:

Vyshedskiy A (2022) Language evolution is not limited to speech acquisition: a large study of language development in children with language deficits highlights the importance of the voluntary imagination component of language. Research Ideas and Outcomes 8: e86401. https://doi.org/10.3897/rio.8.e86401

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Genetically-enhanced biocontrols can help fight large invasive mammals

Genetic biocontrols could rapidly eradicate animals like rats, mice and rabbits. Others – like cats and foxes, would however take a lot longer.

But gene drives are not a one-size-fits-all solution

Invasive alien mammals can have catastrophic impacts on native flora and fauna, causing species extinctions and driving profound environmental change. Classical control methods such as poison baiting, trapping, or hunting are currently not feasible on a large scale, which is why researchers are looking for alternatives.

CRISPR-based genome engineering is often seen as a “silver bullet” for pest control. Despite the increasing interest in the development of this technology for invasive mammals like mice, rats, rabbits, feral cats, and foxes, studies have so far only focused on mice.

Scientists have been pondering whether genome editing technologies could help eradicate larger mammals, and if so, how long it would take.

Rabbit. Photo by Mark Philpott licensed under CC BY-NC 2.0.

In order to address these questions, a team of researchers from the University of Adelaide developed a mathematical model able to simulate the impact of gene drives on mammal populations at a landscape scale. Published in the open-access NeoBiota journal, their study is the first to estimate the time it would take to eradicate long-lived alien mammals.

Using CRISPR-Cas9 technology, the simulated gene drive relies on “molecular scissors” inserted into the Y-chromosome that target and slice up the X-chromosome at the right time during meiosis, so that only Y-chromosome carrying sperms are functional and can successfully fertilize the egg. In this way, the drive carrying males should only produce sons that also carry the molecular scissors on their Y-chromosome. Over multiple generations, females will become rarer and produce fewer offspring; as a result, the population size will fall.

Red fox. Photo by Rylee Isitt licensed under CC BY-SA 2.0.

This “X-shredder” drive has been successfully developed and demonstrated to suppress cage populations of malaria-carrying mosquitos, but has not yet been developed in mammals. The model shows that the X-shredder drive could potentially achieve landscape-scale eradication of mice, rats, rabbits, feral cats, and red foxes, but the probability of success and the time it would take to eradicate them vary greatly.

The researchers investigated the ability of the X-shredder drive to eradicate a population of 200,000 individuals of each species. “CRISPR-based gene drives offer novel solutions for controlling invasive alien species, which could ultimately extend eradication efforts to continental scales,” they concluded.

The method could be effective in small-sized pests, such as rodents and rabbits. The expected time to eradication is 18 years for mice, 19 years for rats, and 48 years for rabbits, with 90% population suppression achieved in around half those times.

However, the results suggest that gene drives are not a one-size-fits-all solution: they might not be so useful in larger species like cats and foxes.

“The probability of eradicating feral cats with gene drives is identical to flipping a coin, 50/50; and provided that the coin lands on the right side, it would take about 140 years to get rid of them,” says Dr. Aysegul Birand, part of the research team. “The probability of eradication is higher for foxes, but the wait is even longer.”

Original source: 

Birand A, Cassey P, Ross JV, Thomas PQ, Prowse TAA (2022) Scalability of genetic biocontrols for eradicating invasive alien mammals. NeoBiota 74: 93-103. https://doi.org/10.3897/neobiota.74.82394