Tag: taxonomy

NOAA Fisheries Zoologist Describes New Fish Species

Dr. Katherine Bemis of the National Systematics Laboratory recently helped describe a new species of fish, the papillated redbait.

New species alert! Dr. Katherine Bemis of NOAA Fisheries’ National Systematics Laboratory and her collaborators recently described a new fish species: Emmelichthys papillatus, or the papillated redbait. Its discovery was published in the journal ZooKeys.

The papillated redbait is a member of the family Emmelichthyidae. There are only 18 known species in this family, which are commonly called redbaits, rovers, or rubyfishes. These deepwater species can be found in warm, tropical waters and are usually bright shades of red, orange, and pink.

How did Bemis and her team make this remarkable discovery? To find out, we’ll have to first travel to a fish market in the Philippines.

A molecular mystery

As part of an interagency campaign to create a reference library of fish DNA “barcodes,” Bemis and her colleagues regularly travel abroad to collect fish specimens. Some come from seafood markets overseas where they are being sold for food. In the field, these new specimens are assigned a preliminary species identification. Then, they’re transported to the Smithsonian Institution and National Systematics Laboratory for genetic sequencing, data collection, and a secondary species confirmation.

Dr. Katherine Bemis holds the holotype–the specimen upon which a new species’ description is based–of the papillated redbait. Credit: Haley Randall/NOAA Fisheries

Since getting involved with this project in 2021, Bemis and teammate Dr. Matthew Girard of the Smithsonian National Museum of Natural History have analyzed thousands of samples. None have made a bigger splash, though, than two small pink fish collected from a Philippine fish market on the island of Cebu.

While collecting data from these specimens, Girard made an exciting observation. Their genetic sequences did not match their initial species identification as golden redbaits—or any other species in the genetic library, for that matter. So which species did Girard and Bemis have on their hands?

Dr. Matthew Girard examines the holotype of the papillated redbait under a microscope. Credit: Dr. Katherine Bemis. Source NOAA Fisheries

In search of answers, Bemis and Girard examined other aspects of the specimens’ biology, including their anatomy. They discovered that these fish differed from the golden redbait in several ways, including:

A different number of gill rakers, structures inside the mouth that help fish to feed
A different number of pectoral fin rays
Two fleshy structures called papillae on the pectoral girdle

These differences, combined with the genetic data, provided evidence that the two specimens were not golden redbaits, but a previously undiscovered species. With only two confirmed specimens, Bemis and Girard wondered if other individuals could be identified in global natural history collections.

Underneath the gill cover, you can observe the two characteristic papillae (singular: papilla) of the papillated redbait labeled with arrows (left). The closely-related golden redbait lacks papillae in the same area (right). Photos courtesy of Dr. Matthew Girard. Source NOAA Fisheries

After some detective work, Bemis and Girard spotted a third specimen they hypothesized might also be the undescribed species. A fish with similar color also identified as a golden redbait had been collected from a fish market in the Philippines by the Kagoshima University Museum in Japan. Bemis and Girard studied the specimen and confirmed their hypothesis with genetic and anatomical data. This specimen became the third record of papillated redbait and, ultimately, the holotype for the species—the specimen upon which a new species description is based.

More to discover

Even after describing new species, there’s always more to learn. Bemis and Girard are energized that there is still much to discover about the papillated redbait and the redbait family, which is relatively poorly known. Any opportunity to add to this small body of knowledge and study redbait species in greater detail is valuable. “I’ve had researchers that work on fish taxonomy say to me, ‘I didn’t even know this family existed.’ That’s how little we know about this group,” Girard emphasizes.

Bemis also notes that because data on the papillated redbait comes from only three specimens purchased in fish markets, she still has lots of questions. For example, Bemis says that they don’t yet know if the new species occurs outside Philippine waters, or the exact habitat in which they occur. “We also don’t know anything about their reproduction or what they eat—really basic aspects of their biology remain to be studied. Now that we recognize that it is different, we only have more to study as new specimens of papillated redbait are collected,” Bemis says.

“It is always a happy and productive moment working with U.S. scientists,” says Dr. Mudjekeewis “Mudjie” Santos of the Philippine National Fisheries Research and Development Institute. Santos was instrumental in the collection of specimens, providing fisheries data on the papillated redbait, and coining a name for the new species in Tagalog, the national language of the Philippines. Here, he examines fish in a Philippine market. Photo courtesy of Dr. Mudjekeewis Santos. Source NOAA Fisheries

One thing is for certain, though. There are more species just waiting to be discovered, and they might be right under our noses. “I think the craziest thing is that the papillated redbait is a new species that came from a market,” Girard says. “The fact that there are undescribed species being sold without us even realizing it underscores how much we still have to learn about marine biodiversity.”

Research article:

Girard MG, Santos MD, Bemis KE (2024) New species of redbait from the Philippines (Teleostei, Emmelichthyidae, Emmelichthys). ZooKeys 1196: 95-109. https://doi.org/10.3897/zookeys.1196.111161

This story was originally published by NOAA Fisheries. It is republished here with their permission.

Pensoft took a BiCIKL ride to Naturalis to report on a 3-year endeavour towards FAIR data

Three years ago, the BiCIKL consortium took to traverse obstacles to wider use and adoption of FAIR and linked biodiversity data.

Leiden – also known as the ‘City of Keys’ and the ‘City of Discoveries’ – was aptly chosen to host the third Empowering Biodiversity Research (EBR III) conference. The two-day conference – this time focusing on the utilisation of biodiversity data as a vehicle for biodiversity research to reach to Policy – was held in a no less fitting locality: the Naturalis Biodiversity Center.

On 25^thand 26^thMarch 2024, the delegates got the chance to learn more about the latest discoveries, trends and innovations from scientists, as well as various stakeholders, including representatives of policy-making bodies, research institutions and infrastructures. The conference also ran a poster session and a Biodiversity Informatics market, where scientists, research teams, project consortia, and providers of biodiversity research-related services and tools could showcase their work and meet like-minded professionals.

BiCIKL stops at the Naturalis Biodiversity Center

The main outcome of the BiCIKL project: the Biodiversity Knowledge Hub, a one-stop knowledge portal to interlinked and machine-readable FAIR data.

The famous for its bicycle friendliness country also made a suitable stop for BiCIKL (an acronym for the Biodiversity Community Integrated Knowledge Library): a project funded under the European Commission’s Horizon 2020 programme that aimed at triggering a culture change in the way users access, (re)use, publish and share biodiversity data. To do this, the BiCIKL consortium set off on a 3-year journey to build on the existing biodiversity data infrastructures, workflows, standards and the linkages between them.

Many of the people who have been involved in the project over the last three years could be seen all around the beautiful venue. Above all, Naturalis is itself one of the partnering institutions at BiCIKL. Then, on Tuesday, on behalf of the BiCIKL consortium and the project’s coordinator: the scientific publisher and technology innovator: Pensoft, Iva Boyadzhieva presented the work done within the project one month ahead of its official conclusion at the end of April.

As she talked about the way the BiCIKL consortium took to traverse obstacles to wider use and adoption of FAIR and linked biodiversity data, she focused on BiCIKL’s main outcome: the Biodiversity Knowledge Hub (BKH).

Key results from the BiCIKL project three years into its existence presented by Pensoft’s Iva Boyadzhieva at the EBR III conference.

Intended to act as a knowledge broker for users who wish to navigate and access sources of open and FAIR biodiversity data, guidelines, tools and services, in practicality, the BKH is a one-stop portal for understanding the complex but increasingly interconnected landscape of biodiversity research infrastructures in Europe and beyond. It collates information, guidelines, recommendations and best practices in usage of FAIR and linked biodiversity data, as well as a continuously expanded catalogue of compliant relevant services and tools.

At the core of the BKH is the FAIR Data Place (FDP), where users can familiarise themselves with each of the participating biodiversity infrastructures and network organisations, and also learn about the specific services they provide. There, anyone can explore various biodiversity data tools and services by browsing by their main data type, e.g. specimens, sequences, taxon names, literature.

While the project might be coming to an end, she pointed out, the BKH is here to stay as a navigation system in a universe of interconnected biodiversity research infrastructures.

To do this, not only will the partners continue to maintain it, but it will also remain open to any research infrastructure that wishes to feature its own tools and services compliant with the linked and FAIR data requirements set by the BiCIKL consortium.

On the event’s website you can access the BiCIKL’s slides presentation as presented at the EBR III conference.

What else was on at the EBR III?

Indisputably, the ‘hot’ topics at the EBR III were the novel technologies for remote and non-invasive, yet efficient biomonitoring; the utilisation of data and other input sourced by citizen scientists; as well as leveraging different types and sources of biodiversity data, in order to better inform decision-makers, but also future-proof the scientific knowledge we have collected and generated to date.

Project’s coordinator Dr Quentin Groom presents the B-Cubed’s approach towards standardised access to biodiversity data for the use of policy-making at the EBR III conference.

Amongst the other Horizon Europe projects presented at the EBR III conference was B-Cubed (Biodiversity Building Blocks for policy). On Monday, the project’s coordinator Dr Quentin Groom (Meise Botanic Garden) familiarised the conference participants with the project, which aims to standardise access to biodiversity data, in order to empower policymakers to proactively address the impacts of biodiversity change.

You can find more about B-Cubed and Pensoft’s role in it in this blog post.

On the event’s website you can access the B-Cubed’s slides presentation as presented at the EBR III conference.

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Dr France Gerard (UK Centre for Ecology & Hydrology) talks about the challenges in using raw data – including those provided by drones – to derive habitat condition metrics.

MAMBO: another Horizon Europe project where Pensoft has been contributing with expertise in science communication, dissemination and exploitation, was also an active participant at the event. An acronym for Modern Approaches to the Monitoring of BiOdiversity, MAMBO had its own session on Tuesday morning, where Dr Vincent Kalkman (Naturalis Biodiversity Center), Dr France Gerard (UK Centre for Ecology & Hydrology) and Prof. Toke Høye (Aarhus University) each took to the stage to demonstrate how modern technology developed within the project is to improve biodiversity and habitat monitoring. Learn more about MAMBO and Pensoft’s involvement in this blog post.

MAMBO’s project coordinator Prof. Toke T. Høye talked about smarter technologies for biodiversity monitoring, including camera traps able to count insects at a particular site.

On the event’s website you can access the MAMBO’s slides presentations by Kalkman, Gerard and Høye, as presented at the EBR III conference.

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The EBR III conference also saw a presentation – albeit remote – from Prof. Dr. Florian Leese (Dean at the University of Duisburg-Essen, Germany, and Editor-in-Chief at the Metabarcoding and Metagenomics journal), where he talked about the promise, but also the challenges for DNA-based methods to empower biodiversity monitoring.

Amongst the key tasks here, he pointed out, are the alignment of DNA-based methods with the Global Biodiversity Framework; central push and funding for standards and guidance; publication of data in portals that adhere to the best data practices and rules; and the mobilisation of existing resources such as the meteorological ones.

Prof. Dr. Florian Leese talked about the promise, but also the challenges for DNA-based methods to empower biodiversity monitoring. He also referred to the 2022 Forum Paper: “Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms” by R. Henrik Nilsson et al.

He also made a reference to the Forum Paper “Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms” by R. Henrik Nilsson et al., where the international team provided a brief rationale and an overview of guidelines targeting the principles and approaches of exposing DNA-derived occurrence data in the context of broader biodiversity data. In the study, published in the Metabarcoding and Metagenomics journal in 2022, they also introduced a living version of these guidelines, which continues to encourage feedback and interaction as new techniques and best practices emerge.

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You can find the programme on the conference website and see highlights on the conference hashtag: #EBR2024.

Don’t forget to also explore the Biodiversity Knowledge Hub for yourself at: https://biodiversityknowledgehub.eu/

Five new plant species with striking flowers discovered in China

The discoveries are photographed and assessed, contributing to knowledge of China’s rich flora.

With more than 30,000 native plant species, including thousands found nowhere else on Earth, China is known for its abundant flora. New species are frequently discovered in the country due to its size and variety of ecosystems.

These five new species with distinct flowers were recently published in Pensoft’s open-access journal PhytoKeys.

Melanoseris penghuana

Belonging to the daisy family (Asteraceae), Melanoseris penghuana was observed growing on steep grassy slopes along the valley edge of Jiulonggou, Mt. Jiaozi Xueshan, at an elevation of approximately 3,200 m.

Through data analysis from two field surveys, the conservation status of this species was classified as Vulnerable. However, located within the Jiaozi Xueshan National Nature Reserve where human disturbance is minimal, its habitat is relatively well protected.

Research paper: https://doi.org/10.3897/phytokeys.238.116343

Hydrangea xinfeniae

Hydrangea xinfeniae belongs to the family Hydrangeaceae and was discovered in the Huagaoxi National Nature Reserve in Shuiwei Town, Sichuan Province. It grows on moist soils under the broadleaved forest at an elevation of 1,200–1,300 m.

Currently known from only three relatively small populations of the type locality, its conservation status is assessed as Data Deficient.

Research paper: https://doi.org/10.3897/phytokeys.238.114289

Prunus tongmuensis

This new species of cherry blossom belongs to the rose family (Rosaceae). It is currently known only from Wuyishan National Park, Fujian and Jiangxi Province, where it grows in various habitats such as the margins of evergreen broad-leaved forests, valleys, or roadsides, at an altitude of 600–1,000 m.

Research paper: https://doi.org/10.3897/phytokeys.237.115098

Ophiorrhiza reflexa

Belonging to the madder family (Rubiaceae), Ophiorrhiza reflexa grows in moist areas under evergreen broad-leaved forests in the limestone region of Napo County, Guangxi.

Researchers found three populations of the species with more than 1,000 individuals at each site during field investigations. The three sites all belong to Laohutiao Provincial Nature Reserve, which is well-protected and not under threat. Ophiorrhiza reflexa is preliminarily assessed as Least Concern.

Research paper: https://doi.org/10.3897/phytokeys.238.116767

Ligularia lushuiensis

Ligularia lushuiensis belongs to the daisy family (Asteraceae). It is currently known only from its type locality, Lushui, northwestern Yunnan, where it grows in alpine meadows at an elevation of 3,322 m.

Currently known only from a small population at its type locality, the single population researchers discovered consists of no more than 200 mature individuals. Overgrazing may threaten the habitat of this species, and it has been preliminarily categorised as Critically Endangered.

Research paper: https://doi.org/10.3897/phytokeys.238.117340

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Why two prehistoric sharks found in Ohio got new names

Research leads to rediscovery of forgotten fossils.

Until recently, Orthacanthus gracilis could have been considered the “John Smith” of prehistoric shark names, given how common it was.

Three different species of sharks from the late Paleozoic Era – about 310 million years ago – were mistakenly given that same name, causing lots of grief to paleontologists who studied and wrote about the sharks through the years and had trouble keeping them apart.

But now Loren Babcock, a professor of earth sciences at The Ohio State University, has finished the arduous task of renaming two of the three sharks – and in the process rediscovered a wealth of fossil fishes that had been stored at an Ohio State museum for years but had been largely forgotten.

Loren Babcock with a collection of Orton Museum’s fossil fishes, including several from John Newberry. Photo by The Ohio State University

In order to change the names, Babcock had to go through a process governed by the International Commission on Zoological Nomenclature (ICZN). He had to document the need to change the names, propose new names and submit them to an ICZN-recognized journal for peer review and then have the ICZN officially accept the names.

Tooth of the shark Orthacanthus lintonensis. The tooth is about 13 mm long.

“It was one of the most complex naming problems we have had in paleontology, which is probably one reason no one attempted to fix it until now,” Babcock said.

“A lot of scientists in the field have written, thanking me for doing this. We are all happy it is finally done,” he said.

One measure of the impact the renaming has had on the field: Babcock’s paper announcing the new names was just published in the journal ZooKeys on Jan. 8, but it has already been referenced on seven different Wikipedia pages.

The original Orthacanthus gracilis fossil was found in Germany and named in 1848. That species gets to keep the name.

The remaining two fossils were found in Ohio and named by the famous American paleontologist John Strong Newberry in 1857 and 1875.

Babcock renamed the Ohio sharks Orthacanthus lintonensis and Orthacanthus adamas, both based on the name of the place where they were originally found.

Why did Newberry give the two Ohio sharks the same name?

“He probably just forgot. It was nearly 20 years between the time the two species were named,” Babcock said.

And as far as giving it the same name as a German species: “In those days, it was really difficult to search for names that were already in existence – they did not have the internet.”

The sharks themselves were fascinating creatures, Babcock said. They were large and creepy, nearly 10 feet long, and looked more like eels than present-day sharks, with long dorsal fins extending the length of their backs and a peculiar spine extending backward from their heads.

They lived in the fresh or brackish water of what are known as “coal swamps” of the late Carboniferous Period (323-299 million years ago) during the late Paleozoic Era. They belong to an extinct group of chondrichthyans (which includes sharks, skates and rays) called the xenacanthiforms.

Dorsal spine of Orthacanthus adamas. The spine is about 71 mm long.

Newberry was for a time the chief geologist at the Geological Survey of Ohio. He played an important role in the early growth of what is now the Orton Geological Museum at Ohio State.

Babcock, who is the current director of the Orton Museum, decided to begin the renaming process after reviewing the museum’s collection. He was surprised to see how many fossils the museum had that had been collected by Newberry, including the two prehistoric sharks.

Babcock wrote about Orton’s Newberry collection in a new article published in the Journal of Vertebrate Paleontology.

Through the years, scientists have written about how various Newberry specimens had been lost. It turns out many had been at the Orton Museum.

“No museum has a larger collection of Newberry’s fossils except for the American Museum of Natural History in New York City,” Babcock said.

“Not a lot of people are aware of that – I did not even know the extent of our collection. If you’re looking for part of the Newberry collection and can’t find it in the American Museum of Natural History, it is probably going to be here.”

Research article:

Babcock LE (2024) Replacement names for two species of Orthacanthus Agassiz, 1843 (Chondrichthyes, Xenacanthiformes), and discussion of Giebelodus Whitley, 1940, replacement name for Chilodus Giebel, 1848 (Chondrichthyes, Xenacanthiformes), preoccupied by Chilodus Müller & Troschel, 1844 (Actinopterygii, Characiformes). ZooKeys 1188: 219-226. https://doi.org/10.3897/zookeys.1188.108571

News piece originally published by the Ohio State University. Republished with permission.

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A new species of rare pseudoscorpion named after the Slovak president

Olpium caputi, named after Zuzana Čaputová, was discovered on the island Tahiti in French Polynesia

There are about 25,000 islands in the Pacific Ocean. The most remote of them are in North and East Polynesia, the Hawaiian Islands, and French Polynesia. Biologists have been attracted to these regions since the 18th century, but French Polynesia has received much less attention compared to the Hawaiian Islands.

A view of the area where *Olpium caputi* was found. Photo by Frédéric A. Jacq

Contributions to our knowledge of the pseudoscorpions of French Polynesia date from the 1930s and are associated with the Pacific Entomological Survey. Since then, the French Polynesian pseudoscorpion fauna has consisted of only four known species.

Thanks to international cooperation, a team of enthusiastic scientists has published the first discovery of a new species of pseudoscorpion from French Polynesia. Between 2017 and 2020, they studied French Polynesia’s fauna and environment for the French Polynesian Agricultural Service and as a part of a large-scale survey of arthropods. During their research work, they collected a few pseudoscorpion specimens on Huahine and Tahiti in the Society Islands.

Among them is a new species named Olpium caputi, collected by sieving moss at 1,450 m about sea level on the Mont Marau Summit, Tahiti, one of the Society Islands archipelago. Its scientific name honours Zuzana Čaputová, the President of Slovakia.

Zuzana Čaputová. Photo by Jindřich Nosek (NoJin) under a CC BY-SA 4.0 license.

“As a female leader, she takes a strong stance and supports women and scientists. Even in the 21st century, women in science or top positions are rare. The rarity of the research in French Polynesia, the uniqueness of the discovery, and the fact that the new species is a female, led us to name it after this inspiring woman who can be a role model of courage and perseverance for many women,” says Jana Christophoryová, who led the study.

The paper is published in the open-access, peer-reviewed journal ZooKeys.

The team:

Katarína Krajčovičová of Bratislavské regionálne ochranárske združenie – BROZ, Bratislava, and Jana Christophoryová of Comenius University, Bratislava, are both zoologists, who specialize in the taxonomy, distribution, and ecology of pseudoscorpions. Frédéric Jacq, botanist, and Thibault Ramage, entomologist, are independent naturalists who have been working on improving the faunistic and taxonomic knowledge of French Polynesia for over 15 years.

Research article:

Krajčovičová K, Ramage T, Jacq FA, Christophoryová J (2024) Pseudoscorpions (Arachnida, Pseudoscorpiones) from French Polynesia with first species records and description of new species. ZooKeys 1192: 29-43. https://doi.org/10.3897/zookeys.1192.111308

Two new freshwater fungi species in China enhance biodiversity knowledge

The discoveries from the southwest of the country add to the impressive diversity of freshwater fungi in China.

Researchers have discovered two new freshwater hyphomycete (mould) species, Acrogenospora alangii and Conioscypha yunnanensis, in southwestern China.

This discovery, detailed in a study published in MycoKeys, marks the addition of these species to the Acrogenospora and Conioscypha genera, further enriching the diversity of freshwater fungi known in the region.

A research team consisting of Lu Li, Hong-Zhi Du and Ratchadawan Cheewangkoon from Chiang Mai University, Thailand, as well as Vinodhini Thiyagaraja and Rungtiwa Phookamsak from Kunming Institute of Botany, China, and Darbhe Jayarama Bhat from King Saud University, Saudi Arabia, employed comprehensive morphological analysis and multi-gene phylogenetic assessments in their study.

Notably, Acrogenospora alangii was identified on submerged branches of the medicinal plant Alangium chinense, highlighting a unique ecological association.

Hostplant of *Acrogenospora alangii* growing near water body.

Freshwater fungi are highly diverse in China and frequently reported from submerged wood, freshwater insects, herbaceous substrates, sediments, leaves, foams, and living plants.

Most species are well-known as saprobes (organisms that live on decaying organisms) and they play an important role in ecological functioning as decomposers, but also can be pathogens as well as symbionts on humans and plants.

This research underscores the ecological and taxonomic richness of freshwater fungi in China, a country already recognised for its diverse fungal habitats. The findings contribute valuable insights into the roles these organisms play in freshwater ecosystems and emphasise the importance of ongoing biodiversity studies in these environments.

Research article

Li L, Du H-Z, Thiyagaraja V, Bhat DJ, Phookamsak R, Cheewangkoon R (2024) Two novel freshwater hyphomycetes, in Acrogenospora (Minutisphaerales, Dothideomycetes) and Conioscypha (Conioscyphales, Sordariomycetes) from Southwestern China. MycoKeys 101: 249-273. https://doi.org/10.3897/mycokeys.101.115209

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Spiders, snakes and pseudoscorpions: new species published in Pensoft journal

Twelve fascinating newly discovered species were published in Pensoft’s journal Zoosystematics and Evolution in January 2024.

Zoosystematics and Evolution kicked off the year with research papers introducing 12 exciting new species from around the world. The journal, published by Pensoft on behalf of Museum für Naturkunde, is known for being at the forefront of animal research and, in particular, for sharing exciting new discoveries like those below.

Four jumping spiders from India

Four new species of Phintella were discovered in India. Generally striking in appearance, the genus now has 18 recognised species in India – second only to China.

Research paper: https://doi.org/10.3897/zse.100.113049

An ethereal sea slug from British waters

Pleurobranchaea britannica, a newly discovered sea slug, is the first of its genus found in British waters. The unusual translucent creature also represents the second valid Pleurobranchaea species from European seas.

Research paper: https://doi.org/10.3897/zse.100.113707

Pleurobranchaea britannica
Pleurobranchaea britannica

A beautiful venomous snake from Thailand

In the Tenasserim Mountain Range of western Thailand, researchers discovered Bungarus sagittatus, a new species of venomous elapid snake. The name sagittatus is derived from sagittata meaning arrow, referencing the dark triangular shape on its subcaudal scales which resembles a barbed arrow.

Research paper: https://doi.org/10.3897/zse.100.116601

Bungarus sagittatus
Bungarus sagittatus

Two eels from India

Researchers described two new species, Ariosoma gracile and Ariosoma kannani, from Indian waters, based on the materials collected from the Kochi coast, Gulf of Mannar and the West Bengal coast, along the Bay of Bengal.

Research paper: https://doi.org/10.3897/zse.100.116611

Ariosoma kannani
Ariosoma gracile

An island-dwelling land snail from Australia

Xanthomelon amurndamilumila was discovered on the North East Isles, offshore from Groote Eylandt, Australia. Its conservation status is of concern on North East Island because of habitat degradation caused by feral deer.

Research paper: https://doi.org/10.3897/zse.100.113243

New fish from Türkiye

A new Eurasian minnow, Phoxinus radeki, was discovered in the Ergene River (Aegean Sea Basin). Salmo brunoi, a new species of trout, was discovered in the Nilüfer River, a tributary of the Susurluk River.

Research papers: https://doi.org/10.3897/zse.100.113467 (Phoxinus radeki),
https://doi.org/10.3897/zse.100.112557 (Salmo brunoi)

Phoxinus radeki
Salmo brunoi

An Indian pseudoscorpion

Ditha shivanparaensis may look like a scorpion, but looks can be deceiving. Rather, it is an arachnid, newly discovered from the tropical montane cloud forests or ‘sholas’ of the Western Ghats of India.

Research paper: https://doi.org/10.3897/zse.100.110020

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With all these discoveries published in January, we anticipate many more exciting new species to come from Zoosystematics and Evolution in 2024!

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Celebrating scientific excellence: Dr. Paul D. N. Hebert awarded the Benjamin Franklin Medal

Dr. Paul D. N. Hebert, known as “the father of DNA barcoding,” has been honoured with the prestigious Benjamin Franklin Medal, a testament to his trailblazing contributions to biodiversity science.

Dr. Paul D. N. Hebert. Photo credit Åge Hojem, NTNU Vitenskapsmuseet/NTNU University Museum, used under a CC BY 2.0 licence

Dr. Hebert’s innovative work has advanced our understanding of global biodiversity, making the identification of species easier, which in turn helps support global conservation efforts. By devising a method that allows the quick and efficient discerning of species, he has transformed biodiversity science.

DNA barcoding has many applications in the classification and monitoring of biodiversity. It can help protect endangered species, control agriculture pests, and identify disease vectors.

Founder and Director of the Centre for Biodiversity Genomics and Chief Executive Officer of the International Barcode of Life consortium (iBOL), Dr. Hebert is one of the leading voices of today’s biodiversity innovation and research.

Dr. Hebert is also chair of the advisory board of Pensoft’s journal Metabarcoding and Metagenomics. He has authored 13 papers in ZooKeys, substantially contributing to untangling the taxonomy of braconid wasps, butterflies, and other insects.

Acylomus ergoti, one of the many insect species Dr. Hebert has worked on.

His work has also appeared in other Pensoft-published journals, such as Biodiversity Data Journal, Nota Lepidopterologica, and Deutsche Entomologische Zeitschrift.

His innovative approach has sparked discussions and debates around the role of novel methodologies in taxonomy.

Dr. Hebert’s recognition with the Benjamin Franklin Medal demonstrates the critical role of biodiversity studies in dealing with global challenges such as the biodiversity crisis. He has inspired a generation of scientists to push the boundaries of knowledge and drive innovation in research technology.

We at Pensoft extend our heartfelt congratulations to Dr. Paul D. N. Hebert on this well-deserved recognition. He continues to lead the way in unravelling the complexities of global biodiversity.

Hidden biodiversity underfoot: DNA barcoding of Taiwanese forest beetles

The intricate world beneath our feet holds secrets that are only now being unveiled, as researchers embark on a groundbreaking project to explore the hidden diversity of forest leaf litter beetles in Taiwan.

Guest blog post by the research team led by Martin Fikácek and Fang-Shuo Hu, based on their paper published in Deutsche Entomologische Zeitschrift.

Forest leaf litter, often likened to terrestrial coral reefs, supports an astonishing variety of life. Among the myriad arthropods dwelling in this ecosystem, beetles emerge as the most common and speciose group. Despite their abundance, our understanding of leaf litter beetles remains limited due to the challenges posed by their sheer numbers, small sizes, and high local endemism.

Unlocking the Mystery with DNA Barcoding

To overcome these challenges, a team of researchers has initiated the Taiwanese Leaf Litter Beetles Barcoding project. Leveraging DNA barcoding, the project aims to create a comprehensive reference library for these elusive beetles. DNA barcoding, a technique using short mitochondrial fragments, accelerates the analysis of entire faunas and aids in the identification of species. The goal is to provide a valuable resource for researchers, ecologists, conservation biologists, and the public.

A Collaborative Journey with Taxonomists

The success of the Taiwanese Leaf Litter Beetles Barcoding project hinges on the invaluable contribution of taxonomists, who play a pivotal role in this groundbreaking research. Recognizing the specialized knowledge required for precise genus and species identifications, the researchers diligently consulted with specialists for each family represented in the extensive dataset.

In cases where these taxonomic experts provided crucial assistance, they were not merely acknowledged but offered co-authorship, acknowledging the significant commitment and expertise they bring to the project. Many taxonomists devote their entire lives to the meticulous study of specific beetle groups, and this collaboration underscores the importance of their dedication. The researchers emphasize the fairness of extending co-authorship to these taxonomic experts, acknowledging their indispensable role in advancing our understanding of Taiwan’s leaf litter beetle fauna.

Larva of *Oodes* (*Lachnocrepis*) *japonicus*. Hu et al.

Rich Beetle Diversity in Taiwan

Taiwan, nestled in the western Pacific, boasts a rich biodiversity resulting from its location at the crossroads of the Oriental and Palearctic biogeographical regions. Beetles, with over 7,700 recorded species belonging to 119 families, stand out as a particularly diverse insect order on the island. Despite this wealth of species, taxonomic research on beetles in Taiwan has been fragmented, and the study of leaf litter beetles has relied heavily on collections from past decades.

Larvae of *Lagria* *scutellaris* (OTU174) associated with adults by DNA. Hu et al.

The current dataset, based on specimens collected in the Huisun Recreation Forest Area in 2019–2021, comprises 4,629 beetles representing 334 species candidates from 36 families. The DNA barcoding approach has not only allowed for efficient species identification but has also provided a glimpse into the intricate world of beetle larvae, enhancing our understanding of their biology and ecological roles. This comprehensive dataset marks a significant step forward in unraveling the mysteries of Taiwan’s diverse beetle fauna.

Project Goals, Progress, and Future Outlook

The Taiwanese Leaf Litter Beetles Barcoding project is dedicated to a three-fold mission: conducting an extensive study of leaf litter beetles, documenting their diversity in Taiwan, and providing a reliable tool for quick identification. The researchers have published the first set of DNA barcodes, unveiling taxonomic insights such as the description of a new species and several newly recorded taxa.

Map of the samples collected in 2019–2023. Hu et al.

While the dataset is geographically limited to a single forest reserve in central Taiwan, it efficiently demonstrates the challenges of studying subtropical and tropical leaf litter beetle faunas. The integration of DNA barcoding and morphology proves instrumental in unraveling the mysteries of this species-diverse ecosystem. Looking ahead, the team plans to expand their sampling across Taiwan, covering diverse regions, altitudinal zones, and forest types.

Continuous updates to the DNA barcode dataset will serve as a valuable resource for future studies, maintaining a balanced approach that recognizes DNA barcoding as an efficient complement to traditional taxonomic methods.

Research article:

Hu F-S, Arriaga-Varela E, Biffi G, Bocák L, Bulirsch P, Damaška AF, Frisch J, Hájek J, Hlaváč P, Ho B-H, Ho Y-H, Hsiao Y, Jelínek J, Klimaszewski J, Kundrata R, Löbl I, Makranczy G, Matsumoto K, Phang G-J, Ruzzier E, Schülke M, Švec Z, Telnov D, Tseng W-Z, Yeh L-W, Le M-H, Fikáček M (2024) Forest leaf litter beetles of Taiwan: first DNA barcodes and first insight into the fauna. Deutsche Entomologische Zeitschrift 71(1): 17-47. https://doi.org/10.3897/dez.71.112278

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Same and different: A new species of pit viper from Myanmar

In a collaborative study involving institutions from Singapore, Malaysia, Germany, and the UK, scientists have discovered a new species of pit viper from Myanmar that is both similar and different from its adjacent sister species.

Finding and describing new species can be a tricky endeavor. Scientists typically look for distinctive characters that can differentiate one species from another. However, variation is a continuum that is not always easy to quantify. At one extreme, multiple species can look alike even though they are different species—these are known as cryptic species. At the other extreme, a single species can be highly variable, creating an illusion of being different species. But what happens when you encounter both extremes simultaneously?

Herpetologist Dr Chan Kin Onn (previously at the Lee Kong Chian Natural History Museum, Singapore, now with the University of Kansas Biodiversity Institute and Natural History Museum, USA) led a study describing a new species of pit viper from Myanmar that is both similar and different from its sister species. The discovery is published in the open-access journal ZooKeys.

A specimen of Trimeresurus ayeyarwadyensis from the Yangon Region, Myanmar. Photo by Wolfgang Wüster

“Asian pit vipers of the genus Trimeresurus are notoriously difficult to tell apart, because they run the gamut of morphological variation. Some groups contain multiple species that look alike, while others may look very different but are actually the same species,” they say.

The redtail pit viper (Trimeresurus erythrurus) occurs along the northern coast of Myanmar and is invariably green with no markings on its body. A different species called the mangrove pit viper (Trimeresurus purpureomaculatus) occurs in southern Myanmar. This species typically has distinct dorsal blotches, and incredibly variable dorsal coloration including gray, yellow, brown, and black, but never green. Interestingly, in central Myanmar, sandwiched between the distribution of the redtail pit viper and the mangrove pit viper, a unique population exists that is green with varying degrees of blotchiness, which appears to be a blend between the redtail pit viper and the mangrove pit viper.

“This mysterious population in central Myanmar baffled us and we initially thought that it could be a hybrid population,” the researchers said. In a separate paper, Dr Chan used modern genomic techniques and determined that the population in central Myanmar was actually a distinct species and not a hybrid population.

But this was not the end of the story. The researchers discovered another surprise when they examined the snake’s morphological features: they found that the new species was also highly variable. Certain populations are dark green with distinct blotches, easily distinguishable from its closest relative, the redtail pit viper, which is bright green with no blotches. However, some populations of the new species are bright green with no blotches and look virtually identical to the redtail pit viper.

A specimen of Trimeresurus ayeyarwadyensis from Meinmahla Kyun Wildlife Sanctuary, Pyapon District, Ayeyarwady Region in Myanmar. Credit Hla tun

“This is an interesting phenomenon, where one species is simultaneously similar and different from its closest relative (the redtail pit viper). We think that at some point in the past, the new species may have exchanged genes with the redtail pit viper from the north and the mangrove pit viper from the south,” says Dr Chan.

The new species is called the Ayeyarwady pit viper (Trimeresurus ayeyarwadyensis) in reference to the Ayeyarwady River, which is the largest and one of the most important rivers in Myanmar. The river forms an expansive delta that is bounded by the Pathein River to the west and the Yangon River to the east. These rivers and their associated basins also mark the westernmost and easternmost distribution boundaries of the Ayeyarwady pit viper.

Research article:

Chan KO, Anuar S, Sankar A, Law IT, Law IS, Shivaram R, Christian C, Mulcahy DG, Malhotra A (2023) A new species of pit-viper from the Ayeyarwady and Yangon regions in Myanmar (Viperidae, Trimeresurus). ZooKeys 1186: 221-234. https://doi.org/10.3897/zookeys.1186.110422

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