Discovered in the Andean cloud forests of northern Peru, a new species in the blazing star family (Loasaceae) has reinforced the vital role of citizen science in plant research.
An international research team collected, identified and documented the rare plant after seeing photographs uploaded by Peruvian naturalist, Carlos Pérez Peña, on the citizen science platform iNaturalist. Assigning the species the name Nasa katjae, they published the discovery in the open-access journal PhytoKeys.
Nasa katjae has striking scarlet-red flowers adapted for hummingbird pollination and is endemic to a single forest near Colasay in the Cajamarca region of Peru, not far from a populated area. Due to its extremely narrow range, it is likely particularly vulnerable to the threat of habitat loss.
The discovery highlights the importance of protecting the remaining pristine habitats in the Amotape-Huancabamba Zone, a biodiversity hotspot home to many rare and isolated species. The team behind the study emphasise that, without immediate conservation efforts, these ecologically fragile regions could be lost to agricultural expansion and climate change before they are fully understood.
Lead author Dr Tilo Henning of the Leibniz Centre for Agricultural Landscape Research remarked on the significance of the find: “If we have overlooked this striking plant, think about what we have missed in more unobtrusive organismal groups such as mosses, fungi and insects.”
“Discovering such a conspicuous flowering plant in a forest directly adjacent to a larger human settlement signifies that we have not even begun to fully map the biodiversity of some regions. We urgently need more taxonomists and funding to meaningfully tackle this.”
While some areas in northern Peru have recently received formal protection, the forest fragment in which Nasa katjae is found remains unprotected. The authors of the study urge decision makers to take action to safeguard these habitats before it is too late.
The discovery of Nasa katjae displays the power of digital tools and citizen science in biodiversity research. Platforms like iNaturalist prove invaluable in detecting and documenting rare species, complementing traditional fieldwork and accelerating new discoveries.
Original source
Henning T, Allen JP, Montesinos-Tubée D, Rodríguez-Rodríguez EF, Peña JLM, Acuña-Castillo R (2025) No end to endemism – contributions to the difficult Nasa Weigend Series Alatae (Loasaceae). A new species from Peru and the rehabilitation of “ Loasa” calycina Benth. PhytoKeys 252: 163-186. https://doi.org/10.3897/phytokeys.252.141635
Based on this press release by the California Academy of Sciences.
Researchers have discovered the first new genus and species of plant in a U.S. national park for nearly 50 years.
Described in the OA journal PhytoKeys, the new-to-science woolly devil (Ovicula biradiata) is a member of the sunflower family, despite looking quite different to its sunburst-shaped relatives.
The small, fuzzy flower grows in the harsh, rocky soils of the Chihuahuan Desert and only appears after rainfall. (Photo courtesy of Big Bend National Park)
The national park is located within the Chihuahuan Desert, the largest and most biologically diverse warm desert in North America, and is a highly studied floristic region.
“While many assume that the plants and animals within our country’s national parks have probably been documented by now, scientists still make surprising new discoveries in these iconic protected landscapes,” says corresponding author and Academy researcher Isaac Lichter Marck, PhD.
From an elevation of less than 1,800 feet along the Rio Grande to nearly 8,000 feet in Chisos Mountains, Big Bend includes massive canyons, vast desert expanses, forest mountains, and an ever-changing river. (Photo courtesy of Big Bend National Park)
Park volunteer Deb Manley was first to observe the plant in March of 2024 by who uploaded the unknown species to the community science app iNaturalist, where an international community of botanists assembled to identify the mysterious flower.
Known to botanists as a “belly plant,” or a small, discreet plant that can only be properly observed by lying on the ground, this distinctive wild flower with furry white foliage and maroon ray florets is an ephemeral species that only blooms after rain. It thrives in harsh rocky habitats with scant rainfall and grows alongside a variety of drought-tolerant shrubs, such as ocotillo, hedgehog cactus, and creosote.
Researchers have only observed the plant in three narrow locations across the northernmost corner of the park, and it is possible that populations of the species are already diminishing.
Big Bend National Park staff members Carolyn Whiting, Deb Manley, and Patty Manning discovered the plant while hiking through the northernmost reaches of the park. (Photo courtesy of Big Bend National Park)
“Plants that thrive in deserts are often quite unique, having evolved specific mechanisms to withstand the extreme drought-and-deluge conditions of these arid landscapes—from water-storing structures to rapid life cycles triggered by rain,” says Lichter Marck.
“But as climate change pushes deserts to become hotter and drier, highly specialized plants like the woolly devil face extinction.”
The plant’s woolly appearance and striking red petals inspired the name Ovicula biradiata. Ovicula, meaning “tiny sheep,” refers to the thick, white hairs that cover the plant’s leaves and honors a more iconic endangered species in Big Bend: the bighorn sheep (Ovis canadensis). Biradiata, or “bi-radial,” refers to the two ray florets in each of the plant’s flowers. Researchers working with the plant affectionately dubbed the fuzzy flower the “woolly devil,” which has become its suggested common name.
Park botanist Carolyn Whiting observes the unknown species in March 2024. (Photo courtesy of Big Bend National Park)
“Now that the species has been identified and named, there is a tremendous amount we have yet to learn about it,” says Big Bend National Park botanist Carolyn Whiting.
“I’m excited to discover whether there are other populations in the park, the details of its life cycle, what pollinates it, and whether we’ll observe it this spring, given the current drought.”
Researchers are now investigating the woolly devil’s potential medicinal properties.
“Under the microscope, we noticed specific glands that are known to possess compounds with anti-cancer and anti-inflammatory properties in other plants within the sunflower family,” says Academy co-author Keily Peralta.
“While further research is needed to determine these properties, this discovery underscores the potential knowledge we stand to gain from preserving plant diversity in fragile desert ecosystems.”
Original source
Manley DL, Lichter Marck IH, Peralta K, Castro Castro A, Wogan KA, Whiting CV, Powell AM (2025) Ovicula biradiata, a new genus of Compositae from Big Bend National Park in Trans-Pecos Texas. PhytoKeys 252: 141-162. https://doi.org/10.3897/phytokeys.252.137624
If you follow any of Pensoft’s social media accounts, you will know that we have been counting down our top 10 favourite species described as new-to-science in our journals this year.
The list is—of course—entirely arbitrary, but it is also a fun way to look back on a year in which several weird and wonderful animals, plants and fungi were discovered.
In this blog post, we will tell you more about each species, share some honourable mentions, and reveal our number 1 spot!
Honourable mentions
The league of legends crab
Gothus teemo and Teemo.
When it was time to name a tiny, ‘furry’ new species of gorilla crab from China, researchers drew unlikely inspiration from the video game League of Legends.
Gothus teemo was named after the character Teemo thanks to its distinctive appearance and has drawn a lot of attention from fans of the franchise.
The new species is thought to have resembled a modern sandtiger shark (pictured).
Calling anything on this list a ‘new species’ is not accurate—rather, they are just new to published science. Nothing exemplifies this more than Palaeohypotodus bizzocoi, a long-extinct shark species that lived 65 million years ago, shortly after the fall of the dinosaurs.
What makes this discovery remarkable is that it was partially accidental. Find out how a 100-year-old box of teeth in Alabama led to the discovery of this ancient shark below.
Sometimes, it is the way in which a new species is discovered that makes it so special.
Such is the case for Schiedea waiahuluensis, a carnation species from Hawaii that is likely the first plant to be identified and collected using drone technology. Learn all about it below!
With its all-black colouration, Tylototriton gaowangjienensis, a crocodile newt from China, has drawn comparisons to Toothless from How to Train Your Dragon.
However, this alluring amphibian hides flashes of orange beneath its tail and toes! Find more pictures and information below.
Besides its adorable appearance, Hoplitis onosmaevae is remarkable due to its distribution. It is currently only known from a small region of the French Alps, and areas >2,000 km away in the mountains of Turkey and Iraq.
Another interesting aspect of Hoplitis onosmaevae is its specialised ecological niche: it is thought to only collect pollen from Onosma species. This narrow ecological niche makes it vulnerable to factors like climate change and changes in agricultural practices.
John L. Clark with Amalophyllon miraculum. Credit @phinaea on Instagram.
The discovery of Amalophyllon miraculum—in an area assumed to be a barren agricultural landscape of plant extinctions—represents an inspiration for biodiversity conservation. This “miracle” plant, as its name suggests, was found surviving in one of the small, isolated forest fragments that remain in the Centinela region of western Ecuador.
This spiky amphibian was discovered on Cerro Candelaria, a mountain in the Tungurahua province. The discovery of this new species in the upper Rio Pastaza watershed suggests this area might be a centre of rapid evolution for these fascinating frogs.
Entomologists and citizen scientists teamed up to discover this new species of flea beetle in the lush rainforests of Borneo. The discovery was made during a Taxon Expeditions trip, where non-scientist people got the chance to work alongside scientists to identify and describe new species.
What makes this discovery particularly exciting is the beetle’s size—it’s actually one of the largest among its relatives! Flea beetles that live in the leaf litter of tropical forests are typically much smaller, and as a result, we know very little about their ecology and diversity.
Discovered in the Red Sea, the ‘grumpy dwarf goby’ (Sueviota aethon) was published as a new species in ZooKeys. You can probably guess how it earned its name! This tiny fish, measuring less than 2 centimetres long, sports a permanent frown thanks to its large canines and fierce expression. Despite its small size, the grumpy dwarfgoby is thought to be a fearsome predator in its coral reef habitat.
Thismia malayanais a mycoheterotrophic plant, meaning it doesn’t photosynthesise. Instead, it acts as a parasite, stealing carbon resources from the fungi on its roots!
By stealing nutrients from fungi, it can thrive in the low-light conditions of dense forest understories where its highly specialised flowers are pollinated by fungus gnats and other small insects.
While the Tiputini velvet worm—Oroperipatus tiputini—may look friendly, it is an accomplished hunter that shoots a sticky substance from a pair of glands to trap its prey. This “living fossil” is a rare and unique invertebrate that evolved over 500 million years ago. The new species was discovered in the Ecuadorian Amazon at the Tiputini Biodiversity Station, which is part of the Yasuní Biosphere Reserve.
They say that life imitates art, and this new gecko species proves that to be true! Researchers in India have discovered a gecko with such a unique and beautiful colouration that they named it after painter Vincent van Gogh. The “Starry Night” gecko, or Cnemaspis vangoghi, was discovered in the Southern Western Ghats and stands out due to the male’s yellow head and forebody with light blue spots on the back, a striking combination reminiscent of the famous painting.
Yet another hectic year has passed for our team at Pensoft, so it feels right to look back at the highlights from the last 12 months, as we buckle up for the leaps and strides in 2025.
In the past, we have used the occasion to take you back to the best moments of our most popular journals (see this list of 2023 highlights from ZooKeys, MycoKeys, PhytoKeys and more!); share milestones related to our ARPHA publishing platform (see the new journals, integrations and features from 2023); or let you reminisce about the coolest research published across our journals during the year(check out our Top 10 new species from 2021).
In 2022, when we celebrated our 30th anniversary on the academic scene, we extended our festive spirit throughout the year as we dived deep into those fantastic three decades. We put up Pensoft’s timeline and finished the year with a New Species Showdown tournament, where our followers on (what was back then) Twitter voted twice a week for their favourite species EVER described on the pages of our taxonomic journals.
Spoiler alert: we will be releasing our 2024 Top 10 New Species on Monday, 23 December, so you’d better go to the right of this screen and subscribe to our blog!
As we realised we might’ve been a bit biased towards our publishing activities over the years, this time, hereby, we chose to present you a retrospection that captures our best 2024 moments from across the departments, and shed light on how the publishing, technology and project communication endeavours fit together to make Pensoft what it is.
In truth, we take pride in being an exponentially growing family of multiple departments that currently comprises over 60 full-time employees and about a dozen freelancers working from all corners of the world, including Australia, Canada, Belgium and the United Kingdom. Together, we are all determined to make sure we continuously improve our service to all who have trusted us: authors, reviewers, editors, client journals, learned societies, research institutions, project consortia and other external collaborators.
After all, great deeds are only possible when you team up with great like-minded people!
In 2024, at Pensoft, we were hugely pleased to see a significant growth in the published output at almost all our journals, including record-breaking numbers in both submissions and publications at flagship titles of ours, including the Biodiversity Data Journal, PhytoKeys and MycoKeys.
Later in 2024, our colleagues, who work together with our clients to ensure their journals comply with the requirements of the top scholarly databases before they apply for indexation, informed us that another two journals in our portfolio have had their applications to Clarivate’s Web of Science successfully accepted. These are the newest journal of the International Association of Vegetation Science: Vegetation and Classification, and Metabarcoding and Metagenomics: a journal we launched in 2017 in collaboration with a team of brilliant scientists working together at the time within the DNAquaNet COST Action.
In 2024, we also joined the celebrations of our long-time partners at the Museum für Naturkunde Berlin, whose three journals: Zoosystematics and Evolution, Deutsche Entomologische Zeitschrift and Fossil Record are all part of our journal portfolio. This year marked the 10th Open Access anniversary of the three journals.
In the meantime, we also registered a record in new titles either joining the Pensoft portfolio or opting for ARPHA Platform’s white-label publishing solution, where journal owners retain exclusivity for the publication of their titles, yet use ARPHA’s end-to-end technology and as many human-provided services as necessary.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev with Prof. Dr. Marc Stadler, Editor-in-Chief of IMA Fungus and President of the International Mycological Association at the Pensoft booth at the 12th International Mycological Congress (August, the Netherlands).
Amongst our new partners are the International Mycological Association who moved their official journal IMA Fungus to ARPHA Platform. As part of Pensoft’s scholarly portfolio, the renowned journal joins another well-known academic title in the field of mycology: MycoKeys, which was launched by Pensoft in 2011. The big announcement was aptly made public at this year’s 12th International Mycological Congress where visitors of the Pensoft stand could often spot newly elected IMA President and IMA Fungus Chief editor: Marc Stadler chatting with our founder and CEO Lyubomir Penev by the Pensoft/MycoKeys booth.
On our end, we did not stop supporting enthusiastic and proactive scientists in their attempt to bridge gaps in scientific knowledge. In January, we launched the Estuarine Management and Technologies journal together with Dr. Soufiane Haddout of the Ibn Tofail University, Morocco.
Later on, Dr. Franco Andreone (Museo Regionale di Scienze Naturali, Italy) sought us with the idea to launch a journal addressing the role of natural history museums and herbaria collections in scientific progress. This collaboration resulted in the Natural History Collections and Museomics journal, officially announced at the joint TDWG-SPNHC conference in Okinawa, Japan in August.
Around this time, we finalised our similarly exciting journal project in partnership with Prof. Dr. Volker Grimm (UFZ, Germany), Prof. Dr. Karin Frank (UFZ, Germany), Prof. Dr. Mark E. Hauber (City University of New York) and Prof. Dr. Florian Jeltsch (University of Potsdam, Germany). The outcome of this collaboration is called Individual-based Ecology: a journal that aims to promote an individual-based perspective in ecology, as it closes the knowledge gap between individual-level responses and broader ecological patterns.
The three newly-launched journals are all published under the Diamond Open Access model, where neither access, nor publication is subject to charges.
As you can see, we have a lot to be proud of in terms of our journals. This is also why in 2024 our team took a record number of trips to attend major scientific events, where we got the chance to meet face-to-face with long-time editors, authors, reviewers and readers of our journals. Even more exciting was meeting the new faces of scientific research and learning about their own take on scholarship and academic journals.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev welcomed editors at PhytoKeys to the Pensoft-PhytoKeys-branded booth at the XX International Botanical Congress in July 2024 (Spain).
We cannot possibly comment on Pensoft’s tech progress in 2024 without mentioning the EU-funded project BiCIKL (acronym for Biodiversity Community Integrated Knowledge Library) that we coordinated for three years ending up last April.
This 36-month endeavour saw 14 member institutions and 15 research infrastructures representing diverse actors from the biodiversity data realm come together to improve bi-directional links between different platforms, standards, formats and scientific fields.
Following these three years of collaborative work, we reported a great many notable research outputs from our consortium (find about them in the open-science project collection in the Research Ideas and Outcomes journal, titled “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective”) that culminated in the Biodiversity Knowledge Hub: a one-stop portal that allows users to access FAIR and interlinked biodiversity data and services in a few clicks; and also a set of policy recommendations addressing key policy makers, research institutions and funders who deal with various types of data about the world’s biodiversity, and are thereby responsible to ensuring there findability, accessibility, interoperability and reusability (FAIR-ness).
Apart from coordinating BiCIKL, we also worked side-by-side with our partners to develop, refine and test each other’s tools and services, in order to make sure that they communicate efficiently with each other, thereby aligning with the principles of FAIR data and the needs of the scientific community in the long run.
During those three years we made a lot of refinements to our OpenBiodiv: a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System, and our ARPHA Writing Tool. The latter is an XML-based online authoring environment using a large set of pre-formatted templates, where manuscripts are collaboratively written, edited and submitted to participating journals published on ARPHA Platform. What makes the tool particularly special is its multiple features that streamline and FAIRify data publishing as part of a scientific publication, especially in the field of biodiversity knowledge. In fact, we made enough improvements to the ARPHA Writing Tool that we will be soon officially releasing its 2.0 version!
OpenBiodiv – The Open Biodiversity Knowledge Management System
ARPHA Writing Tool 2.0
Amongst our collaborative projects are the Nanopublications for Biodiversity workflow that we co-developed with KnowledgePixels to allow researchers to ‘fragment’ their most important scientific findings into machine-actionable and machine-interpretable statements. Being the smallest units of publishable information, these ‘pixels of knowledge’ present an assertion about anything that can be uniquely identified and attributed to its author and serve to communicate a single statement, its original source (provenance) and citation record (publication info).
Nanopublications for Biodiversity
In partnership with the Swiss-based Text Mining group of Patrick Ruch at SIB and the text- and data-mining association Plazi, we brought the SIB Literature Services (SIBiLS) database one step closer to solidifying its “Biodiversity PMC” portal and working title.
Understandably, we spent a lot of effort, time and enthusiasm in raising awareness about our most recent innovations, in addition to our long-standing workflows, formats and tools developed with the aim to facilitate open and efficient access to scientific data; and their integration into published scholarly work, as well as receiving well-deserved recognition for their collection.
We just can’t stress it enough how important and beneficial it is for everyone to have high-quality FAIR data, ideally made available within a formal scientific publication!
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
Pensoft’s CTO Teodor Georgiev talks about innovative methods and good practices in the publication of biodiversity data in scholarly papers at the First national meeting of the Bulgarian Barcode of Life (BgBOL) consortium (December, Bulgaria).
🤔What is a Data Paper?
👍 A means to describe a #dataset – like the ones on @GBIF – in a standardised, widely accepted #scientific article format.
👇🧵Highlights from @LyuboPenev's talk at the int'l symposium "#BiodiversityData in montane & arid Eurasia" in Kazakhstan 🇰🇿
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev presenting his “Data papers on biodiversity” talk at the “Biodiversity data in montane and arid Eurasia” symposium jointly organized by GBIF and by the Institute of Zoology of Republic of Kazakhstan (November, Kazakhstan).
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📸Today, at the @EASEeditors symposium, our @teodorpensoft gave a sneak peek into the AI-assisted tools at @ARPHAplatform we have been working on (e.g. Word -> JATS XML conversion) and the #ARPHA Writing Tool 2.0 (coming up in early 2025)!🎉
Pensoft’s CTO Teodor Georgiev presents new features and workflows currently in testing at the ARPHA Writing Tool 2.0 at the EASE Autumn Symposium 2024 (online event).Pensoft’s Head of Journal development, Marketing and PR Iva Boyadzhieva talks about Pensoft’s data publishing approach and innovations at the German Ecological Society 53rd Annual Conference (September, Germany).
Pensoft as a science communicator
At our Project team, which is undoubtedly the fastest developing department at Pensoft, science communicators are working closely with technology and publishing teams to help consortia bring their scientific results closer to policy actors, decision-makers and the society at large.
Ultimately, bridging the notorious chasm between researchers and global politics boils down to mutual understanding and dialogue.
Pensoft’s communication team attended COP16 (November 2024, Colombia) along with partners at the consortia of CO-OP4CBD, BioAgora and RESPIN: three Horizon Europe projects, whose communication and dissemination is led by Pensoft.
Throughout 2024, the team, comprising 20 science communicators and project managers, has been working as part of 27 EU-funded project consortia, including nine that have only started this year (check out all partnering projects on the Pensoft website, ordered from most recently started to oldest). Apart from communicating key outcomes and activities during the duration of the projects, at many of the projects, our team has also been actively involved in their grant proposal drafting, coordination, administration, platform development, graphic and web design and others (see all project services offered by Pensoft to consortia).
📸As leaders of the “Stakeholder engagement, comms & dissemination” WP at @BCubedProject, we joined the annual meeting to report on project branding, #scicomm & #DataManagement.
Naturally, we had a seat on the front row during many milestones achieved by our partners at all those 27 ongoing projects, and communicated to the public by our communicators.
Amongst those are the release of the InsectsCount web application developed within the Horizon 2020 project SHOWCASE. Through innovative gamification elements, the app encourages users to share valuable data about flower-visiting insects, which in turn help researchers gain new knowledge about the relationship between observed species and the region’s land use and management practices (learn more about InsectsCount on the SHOWCASE prroject website).
Another fantastic project output was the long-awaited dataset of maps of annual forest disturbances across 38 European countries derived from the Landsat satellite data archive published by the Horizon Europe project ForestPaths in April (find more about the European Forest Disturbance Atlas on the ForestPaths project website).
In a major company highlight, last month, our project team participated in COP29 in Baku, Azerbaijan with a side event dedicated to the role of open science and science communication in climate- and biodiversity-friendly policy.
Pensoft’s participation at COP29 – as well as our perspective on FAIR data and open science – were recently covered in an interview by Exposed by CMD (a US-based news media accredited to cover the event) with our science communicator Alexandra Korcheva and project manager Boris Barov.
You see, A LOT of great things worth celebrating happened during the year for us at Pensoft: all thanks to ceaselessly flourishing collaboration based on transparency, trust and integrity. Huge ‘THANK YOU!’ goes to everyone who has joined us in our endeavours!
Here’s to many more shared achievements coming up in 2025!
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A new-to-science carnation species from Hawaii is likely the first plant to be identified and collected using drone technology.
Check out the video below to see how it happened!
Video by Ben Nyberg.
Published in the open-access journal PhytoKeys, the discovery was facilitated by the National Tropical Botanical Garden‘s (NTBG) botanical drone program, which deploys unmanned aircraft to explore remote cliff environments.
Via drone photography, researchers spotted Schiedea waiahuluensis growing on steep, inaccessible cliffs in the Waiahulu region of the island of Kauai. To gather samples, they suspended ‘the Mamba’ – a remote plant collection device – from a drone and used it to grab, cut, and collect the plant for study.
Collecting arm hanging from drone. Photo by Ben Nyberg.
The new species belongs to a well-studied Hawaiian lineage in the carnation family. Its genus, Schiedea, consists of 36 species spread across the Hawaiian Islands, with 12 species found only on Kauai.
Schiedea waiahuluensis grows only on the dry cliffs of Waiahulu, with an estimated population of around 345 individuals, primarily growing on bare rock surfaces in small pockets of soil.
Flower of drone collected specimen. Photo by KR Wood.
Their fragile habitat is under threat from invasive plant species and feral goats, making conservation efforts crucial. Researchers are planning further studies to assess the full distribution and conservation needs of the species.
“S. waiahuluensis has a combination of traits that would have been very difficult to predict, and upended our notions about diversity in Schiedea, even after decades of research on this genus.”
Following more than 40 years of research on Schiedea on Kauai, this finding demonstrates the potential for future discoveries of native plants across the Hawaiian Islands through drone technology, and highlights the burgeoning role of drones in advancing conservation efforts and preventing plant extinctions.
Schiedea waiahuluensis habitat. A) Waiahulu branch of Waimea Canyon, drone photo. B) non-collected individual, drone photo. Photos by Ben Nyberg.
“The new development of the NTBG drone program provides a major new tool in biodiversity research that has allowed for better assessment of species distribution and status as shown by drone missions on the inaccessible cliffs of the major canyons on Kauai.
It has revealed populations of species presumed extinct such as the recent rediscovery of Hibiscadelphus woodii, a relative of Hibiscus, mapped populations of Schiedea waiahuluensis, and collected seeds via drone for establishment of a conservation collection of this species.”
While drone-technology innovators were not likely thinking about botany, Schiedea waiahuluensis serves as a reminder that science can benefit from technologic advancements from seemingly unrelated fields.
For another ‘miraculous’ discovery, read our blog on Amalophyllon miraculum, an incredible little plant from Ecuador!
Wagner WL, Weller SG, Sakai AK, Nyberg B, Wood KR (2024) Schiedea waiahuluensis (Caryophyllaceae), an enigmatic new species from Kaua’i, Hawaiian Islands and the first species discovered by a drone collection system. PhytoKeys 247: 111-121. https://doi.org/10.3897/phytokeys.247.130241
Towards the end of July 2024, members of the Pensoft team travelled to Madrid for the XX International Botanical Congress, where an estimated 3,000 botanists gathered for the biggest event of the year.
Held once every six years, the congress has enlarged its scope over more than a century to become an integrated forum for knowledge on the plant and mycological world.
Proceedings kicked off with a fantastic lecture from PhytoKeys Editor-in-Chief Sandy Knapp titled, “Why botany? Why now?” The following day, Thorsten Lumbsch, Editor-in-Chief of MycoKeys, gave a keynote lecture titled, “Unravelling diversity and evolution of lichens in the genomic era.”
In fact, many authors, editors and readers of Pensoft’s journals were in attendance. And several gave presentations, including a plenary talk by renowned PhytoKeys editor, Pamela S. Soltis, on the changing face of herbarium collections.
Denitsa Peneva greeting researchers at the Pensoft stand.Lyubomir Penev giving a presentation to PhytoKeys editor.
The Pensoft team welcomed attendees with a bespoke stand, complete with print copies, illustrations and various promotional materials depicting beautiful species featured in PhytoKeys.
Lyubomir Penev, founder of Pensoft and founding editor of PhytoKeys, hosted a gathering of PhytoKeys editors at the stand, where he presented the story, latest results and highlights of the journal.
Researchers who found their publications on display at the Pensoft stand.
The congress included numerous lectures, symposia sessions, workshops and meetings across a variety of subject matters, all of which can be found on the IBC 2024 website. The major topics of the event were:
Systematics, phylogenetics, biogeography and evolution
Ecology, environment and global change, including invasive species and plant-animal interactions
Biodiversity and conservation
Structure, physiology and development, including Evo-Devo
Genetics, genomics and bioinformatics
Plants and Society
At the closing ceremony, multiple awards were presented, including Pensoft’s Early Career Researcher Talk Award. Sandy Knapp presented the award to Sonia Molino for her talk on a global study of the genus Parablechnum, a lineage of ferns of the family Blechnaceae. The award grants her a free publication in PhytoKeys.
What a way to end @ibc2024 ! I can't believe how lucky I was to get the Early career researcher talk award on taxonomy or systematics by @Pensoft for my talk at the conference. And delivered by my admired @SandyKnapp! Thank you so much! See you in Cape Town! pic.twitter.com/Y79U1xcKxj
Describing her study, Sofia Molino said: “To date there has been no study that takes into account all the centres of diversity of the genus at the same time, and what we have found is that it has a very complex evolutionary history, with several cases of cryptic diversity, hybridisation and rapid radiation.”
On her plans to use her free publication for a pending study on a series of novelties within Parablechnum in Bolivia, she added: “Although this is probably the country in South America where Parablechnum has been studied the most, after one expedition we have still found a lot of new things, such as several undescribed species, hybrids and new localities of some species that were only known from type material.”
The next International Botanical Congress is in 2029 and will take place in South Africa, where the Pensoft team looks forward to seeing plenty of new faces and old friends!
Herbaria – collections of preserved plant specimens – are crucial in botanical research and biodiversity conservation. Digitising these collections is an important step towards making data available to all, preserving specimens by reducing the need for handling, and creating new research opportunities.
Mass digitisation of herbarium specimens on a conveyor belt at Meise Botanic Garden, allowing the imaging of 3,000–5,000 specimens per day.
Meise Botanic Garden recently completed a six-year project to digitise approximately three million specimens of their herbarium collection. While it was a big change for their organisation, it was one they deemed necessary to bring their collection into the digital age.
Joint restoration session of the herbarium team at Meise Botanic Garden.
Based on their experience, the team published ten valuable lessons they learned during the process to assist other institutions embarking on similar digitisation projects. These lessons are available in the open-access journal PhytoKeys.
1. Knowing yourself is the beginning of all wisdom ― Aristotle
Before starting digitisation, it is important to understand the full scope of your collection. This involves detailed inventory checks and assessments of the state of the specimens. Knowing the exact number and condition of the specimens will help in accurate budgeting and planning. A detailed inventory of a representative tenth of your collection can be extrapolated to the entire collection.
2. Prioritise (if lack of money forces you to do so)
If resources are limited, prioritising which parts of the collection to digitise first is key. Consider factors such as the scientific importance of the specimens, their physical state, and stakeholder needs. It is important to note that digitising the entire collection can be more efficient than selecting subcollections, as partial digitisation can complicate management.
3. Learn from other people’s successes – and mistakes
Do not reinvent the wheel. Engage with other institutions that have undertaken similar projects to learn from their successes and mistakes. Follow existing guidelines and adapt them to fit your specific needs. If you think you have a better way of doing things, talk it over with someone with experience.
4. Decide whether to do it yourself or have it done for you
Deciding whether to conduct the digitisation in-house or to outsource it depends on available resources. Consider the skills and availability of your staff and the costs associated with outsourcing. Some tasks, such as imaging or data transcription, might be more efficiently handled by external specialists.
5. Make a plan
A well-thought-out plan is crucial. Define workflows, procedures, and quality control mechanisms. And be specific about your requirements when outsourcing parts of the project to avoid any misunderstandings.
6. Go shopping
Ensure that all necessary supplies, such as barcodes, storage containers, and IT infrastructure, are in place before starting the digitisation process. Bulk purchasing is often cost-effective, and having everything ready will prevent delays.
7. Make your collection look its best for the photographer
Prepare the specimens for imaging by incorporating pre-digitisation curation steps like repairing damaged specimens and adding barcodes.
8. Expect problems, particularly ones that you don’t expect
Problems will arise, from equipment malfunctions to human errors. Establish quality control processes to catch issues early. Automate checks where possible and ensure prompt human review for aspects like image focus and lighting.
9. Make your data visible – make a big deal of it
Making digitised data publicly accessible is vital. Use online portals and ensure the data adheres to FAIR principles (Findable, Accessible, Interoperable, Reusable). Publicity will increase the use and impact of your collection.
10. Save your data for the future
Make sure the digitised data is backed up in a secure, offsite archive. Long-term storage solutions should be considered to preserve the data for future use. And factor this ongoing cost into the budget.
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To read extended advice from Meise Botanic Garden, as well as four case studies, check out the full research paper below:
Original source
De Smedt S, Bogaerts A, De Meeter N, Dillen M, Engledow H, Van Wambeke P, Leliaert F, Groom Q (2024) Ten lessons learned from the mass digitisation of a herbarium collection. PhytoKeys 244: 23-37. https://doi.org/10.3897/phytokeys.244.120112
At the Pensoft’s stand, delegates learned about the scientific publisher’s versatile open-access journal portfolio, as well as related publishing services and the Horizon project where Pensoft is a partner.
Here’s a fun fact: the University of Bologna is the oldest one still in operation in the world. It is also etched in history for being the first institution to award degrees of higher learning.
This year, the annual event themed “Biodiversity positive by 2030” took place in the stunning Italian city of Bologna famous for its historical and cultural heritage, in a way building a bridge between the past of European civilisation and the future, which is now in our hands.
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At the Pensoft’s stand, delegates learned about the scientific publisher’s versatile open-access journal portfolio of over 30 journals covering the fields of ecology and biodiversity, as well as other related services and products offered by Pensoft, including the end-to-end full-featured scholarly publishing platform ARPHA, which hosts and powers all Pensoft journals, in addition to dozens other academic outlets owned by learned societies, natural history museums and other academic institutions.
In addition to its convenient collaborative online environment, user interface and automated export/import workflows, what ARPHA’s clients enjoy perhaps the most, are the various human-provided services that come with the platform, including graphic and web design, assistance in journal indexing, typesetting, copyediting and science communication.
Visitors at the stand could also be heard chatting with Pensoft’s Head of Journal development, Marketing and PR: Iva Boyadzhieva about the publisher’s innovative solutions for permanent preservation and far-reaching dissemination and communication of academic outputs that do not match the traditional research article format.
For example, the Research Ideas and Outcomes (RIO) journal was launched in 2015 by Pensoft as an open-science journal that would publish ‘unconventional’ research outputs, such as Grant proposals, Policy briefs, Project reports, Data management plans, Research ideas etc. Its project-branded open-science collections are in fact one of the Pensoft’s products that enjoys particular attention to participants in scientific projects funded by the likes of the European Commission’s Horizon programme.
Another innovation by Pensoft that easily becomes a talking point at forums like ECCB, is the ARPHA Conference Abstract (ACA) platform, which is basically a journal for conference abstracts, where abstracts are treated and published much like regular journal articles (a.k.a. ‘mini papers’) to enable permanent preservation, but also accessibility, discoverability and citability. Furthermore, ACA has been designed to act as an abstracts submission portal, where the abstracts undergo review and receive feedback before being published and indexed at dozens of relevant scientific databases.
On Wednesday, delegates also got a chance to hear the talk by renowned vegetation ecologist at the ZHAW Zurich University of Applied Sciences and Editor-in-Chief at the Vegetation Classification and Survey journal: Prof. Dr. Jürgen Dengler. He presented findings and conclusions concerning neophytes in Switzerland, while drawing comparisons with other European countries and regions.
🌱 Presence of #neophytes is not necesarily problematic, and can actually have positive effect, concludes recent research on 🇨🇭Swiss #grasslands diversity.
At this year’s ECCB, Pensoft took a stand as an active Horizon project participant too. At the publisher’s booth, the delegates could explore various project outputs produced within REST-COAST, SpongeBoost and BioAgora. Each of these initiatives has been selected by the European Commission to work on the mitigation of biodiversity decline, while aiming for sustainable ecosystems throughout the Old continent.
In all three projects, Pensoft is a consortium member, who contributes with expertise in science communication, dissemination, stakeholder engagement and technological development.
Having started earlier this year, SpongeBoost is to build upon existing solutions and their large-scale implementation by implementing innovative approaches to improve the functional capacity of sponge landscapes. The project is coordinated by the Helmholtz Centre for Environmental Research (UFZ) and will be developed with the active participation of 10 partnering institutions from seven countries across Europe.
In the meantime, since 2022, the five-year BioAgora project has been working towards setting up the Science Service for Biodiversity platform, which will turn into an efficient forum for dialogue between scientists, policy actors and other knowledge holders. BioAgora is a joint initiative, which brings together 22 partners from 13 European countries led by the Finnish Environment Institute (SYKE).
4/🧵 The @HorizonEU project @BioAgoraEU is to create an efficient platform for dialogue between #scientists, policy actors & other knowledge holders.
Still, REST-COAST, SpongeBoost and BioAgora were not the only Horizon projects involving Pensoft that made an appearance at ECCB this year thanks to the Pensoft team.
On behalf of OBSGESSION – another Horizon-funded project, Nikola Ganchev, Communications officer at Pensoft, presented a poster about the recently started project. Until the end of 2027, the OBSGESSION project, also led by the Finnish Environment Institute (SYKE) and involving a total of 12 partnering organisations, will be tasked with the integration of different biodiversity data sources, including Earth Observation, in-situ research, and ecological models. Eventually, these will all be made into a comprehensive product for biodiversity management in both terrestrial and freshwater ecosystems.
On Tuesday evening, the CO-OP4CBD (abbreviation for Co-operation for the Convention on Biological Diversity) team: another Horizon Europe project, where Pensoft contributes with expertise in science communication and dissemination, held a workshop dedicated to what needs to be done to promote CBD activities in Central and Eastern Europe.
On the next day, scientists from the EuropaBON consortium: another project involving Pensoft that had concluded only about a month ago, held a session to report on the final conclusions from the project concerning the state and progress in biodiversity monitoring.
📌Eastern Europe and countries outside Europe underrepresented in the @EuropaBon_H2020 network, reports Christian Langer at #eccb2024bologna.
The discovery represents an inspiration for biodiversity conservation in an area the scientific community assumed to be a barren agricultural landscape of plant extinctions.
A new 5 cm-high plant species has been discovered on the western Andean slopes of Ecuador in an area where scientists once believed a rich diversity of native plants and animals had been totally destroyed.
John L. Clark with Amalophyllon miraculum. Credit @phinaea on Instagram.
The tiny plant, with iridescent foliage and white ephemeral flowers, was found in a farmer’s backyard during ongoing collaborative research expeditions in western Ecuador, led by teams of Ecuadorian and international researchers.
The expeditions resulted in the rediscovery of small forest fragments in a legendary hotspot known as Centinela. Selby Gardens research botanist, John L. Clark is the lead author of the article describing the new species in the peer-reviewed, open-access journal PhytoKeys.
The forest fragments are less than 20 miles from Santo Domingo, a major city of more than 300,000 people. Each fragment of Centinela is an isolated biodiversity island surrounded by large swaths of agricultural landscape largely devoid of forest.
Amalophyllon miraculum leaf.
A seminal publication titled “Biological extinction in western Ecuador” brought attention to the rapid loss of rainforest in western Ecuador. It was authored by the late botanists Alwyn Gentry and Calaway Dodson, Selby Gardens’ first Executive Director, whose research inspired names such as Gasteranthus extinctus in recognition of the loss of more than 70-97% of rainforests from the western Ecuadorian lowlands due to agriculture.
This discovery, amongst others, has shattered the preconception that the multitudes of life in the region had vanished entirely. The name Amalophyllon miraculum reflects the “miracle” of its discovery in the unexpected fragments of protected forests.
“The heroic efforts of local landowners who maintained small patches of forests – usually surrounding waterfalls – were instrumental in conserving these remnant forest fragments,” Clark says.
Clark JL, Fernández A, Zapata JN, Restrepo-Villarroel C, White DM, Pitman NCA (2024) Amalophyllon miraculum (Gesneriaceae), an exceptionally small lithophilous new species from the western Andean slopes of Ecuador. PhytoKeys 242: 307–316. https://doi.org/10.3897/phytokeys.242.118069
Scholarly publisher Pensoft is excited to announce it is now on Chinese social media platform Weibo. The move is aimed at fostering stronger connections with researchers, academics, and enthusiasts in China, which in turn will enhance the dissemination of scientific knowledge and facilitate international collaboration.
With over half a billion active users, Weibo is a powerful social media platform that combines the functionalities of microblogging and social networking. The Pensoft team is looking forward to engaging in real-time conversations with its Chinese audience, sharing insights, and receiving their feedback.
The launch coincides with the Dragon Boat Festival, a significant cultural event in China that commemorates the ancient poet Qu Yuan and symbolizes unity and teamwork.
The move aims to make Pensoft’s publications and updates more accessible to Chinese researchers, allowing them to stay informed about the latest scientific discoveries and advancements. In addition, it offers an excellent opportunity for Pensoft to foster collaborations with Chinese institutions, researchers, and academic societies.
As a pioneer in open-access publishing, Pensoft will also use its Weibo account to promote the benefits of open access, making sure Chinese research reaches a global audience without paywalls.
“China, with its rapidly growing research output and a burgeoning community of scholars, represents a significant segment of the global academic landscape. Recognizing the importance of engaging with this vibrant community, Pensoft’s decision to establish a presence on Weibo underscores its commitment to inclusivity and accessibility in scientific publishing,” says Lyubomir Penev, CEO and founder of Pensoft.
We invite you to join Pensoft’s Weibo account to learn all about our latest scientific discoveries and publishing updates.
