The beta release of an innovative collaborative stand-alone authoring tool transforms manuscript preparation with semantic enrichment and real-time collaboration capabilities.
Scholarly publisher and technology provider Pensoft Publishers announces the beta launch of ORPHO, a revolutionary online platform designed to streamline collaborative scientific writing and produce AI-ready, future-proof scholarly literature.
ORPHO presents a significant advancement in scholarly publishing technology, combining intuitive writing features with sophisticated semantic enrichment capabilities. The new platform builds upon Pensoft’s fifteen years of experience as a developer of semantic publishing infrastructure.
Key Features
Within a shared online workspace, researchers can start with built-in customisable templates, create their own or import an existing file. They can then team up with collaborators in real time using track changes, role-based user rights, inline comments, and document-level chat. More significantly, ORPHO automatically structures scientific content according to international publishing standards, making research outputs findable, discoverable, interoperable and reusable (FAIR) once published.
Unlike its predecessor, the ARPHA Writing Tool, ORPHO is available as a standalone real-time collaborative workspace decoupled from journals hosted on Pensoft’s ARPHA Publishing Platform. Once a manuscript is ready, authors receive AI-FAIR machine-readable content that can be formatted to meet multiple journal requirements at the click of a button.
The platform’s adaptability to domain-specific workflows is currently being piloted in biodiversity science. ORPHO integrates seamlessly with leading biodiversity data aggregators, including the Global Biodiversity Information Facility (GBIF), Barcode of Life Data Systems (BOLD) and PlutoF, via import and export facilities for structured data, making ORPHO particularly valuable for researchers handling taxonomic, ecological and biodiversity data.
ORPHO: A new intelligent workspace for scientific writing.
Why ORPHO?
The name draws inspiration from multiple sources which reflect the tool’s philosophy and heritage. Named after Orphium: a unique plant genus endemic to South Africa whose sole species (Orphium frutescens) is known as the sea rose, ORPHO reflects the platform’s distinctive nature, heritage, and core philosophy.
It also evokes Orpheus, the legendary musician of ancient Thrace whose home region, the Rhodopi Mountains, lies in present-day Bulgaria, where ORPHO’s developer, Pensoft, is headquartered. The name thus honours the tool’s origins whilst embodying the exceptional creative performance it enables.
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Prof. Dr. Lyubomir Penev, founder and CEO of Pensoft, comments:
“We are well aware that researchers today face an overwhelming list of formatting requirements and technical demands in an AI-driven landscape. It is true that rapid technological advancement presents both immense opportunities and mounting complexities for researchers.
We built ORPHO to remove that friction by offering an intuitive, collaborative workspace that lets scientists focus on their research. As a scientific publisher, our mission is to make scholarly publishing a seamless, rewarding experience fit for the modern age.”
The beta release invites researchers, institutions and publishing platforms to trial ORPHO and provide feedback. Access is available at orpho.net.
Researchers used simple moss bags and portable X-ray technology to track urban heavy metal pollution, offering a cheap, effective tool for environmental monitoring.
Air pollution is an invisible threat in our urban environments, heavily impacting cardiovascular and respiratory systems and standing as the single largest environmental cause of disease and premature death globally.
Often, monitoring the heavy metals and particulate matter that fill city air involves expensive equipment, heavy use of chemical reagents, and time-consuming laboratory preparation. However, researchers in Chicago have been exploring a much cheaper, greener alternative that might already be growing nearby: moss. The full research is available in the open-access, peer-reviewed journal BioRisk.
Because mosses lack true root systems, they absorb the vital nutrients they need to survive, along with any environmental contaminants, directly from the atmosphere, making them exceptionally effective living records of long-term air pollution.
Sphagnum moss by andipandz via Canva.
To test the viability of this biological monitoring, the team systematically deployed small, one-gram mesh bags of carefully cleaned Sphagnum moss across various locations in the Chicago area.
The scientists strategically hung these “green guardians” in diverse environments, including an industrial metals recycling facility, a marshland corridor, a commuter railroad station, and a semi-natural reference area in Lake County.
A. Biobags attached to branches in a semi-natural reference area; B. Biobags taped to the exhaust of a Ford F-350 diesel truck. Credit to Campbell et al., 2026
In a direct test of vehicle emissions, they even taped several moss bags straight to the exhaust pipe of a diesel truck. After leaving the moss bags exposed to the urban elements for roughly three to four weeks, the team brought them back to the lab, crushed them into a homogeneous powder using liquid nitrogen, and analyzed them using portable X-ray fluorescence (pXRF) technology
The living monitors proved incredibly adept at capturing location-specific pollution footprints. Unsurprisingly, the moss placed near the metals recycling facility showed elevated levels across all the measured heavy metals, acting as a clear multi-metal emission source. The bags stationed near the commuter railroad exhibited significant spikes in iron, a likely consequence of the friction and wear on the steel rail infrastructure.
Alarmingly, even the moss placed in the semi-natural Lake County area absorbed elevated concentrations of nickel, demonstrating that pollution from a major highway less than one kilometer away can travel far into a seemingly pristine environment.
Ratio of pXRF counts for exposed samples to pXRF counts for unexposed samples for six metals. The horizontal line represents a ratio of 1, i.e., no net accumulation of that metal in the exposed samples. Error bars represent the standard deviation of the ratio of the measurements of the exposed samples to the unexposed samples. Credit to Campbell et al., 2026
Furthermore, the moss bags directly attached to the diesel truck showed a rapid accumulation of metals like iron, zinc, copper, titanium, and manganese within just three days, though a heavy Chicago rainstorm on the fourth day washed some of that accumulated particulate matter away.
Ultimately, this exploratory study demonstrates that combining simple moss bags with portable X-ray technology can serve as a highly accurate, cost-effective alternative to conventional air monitoring. Since the preparation is cost-effective and the screening process is relatively quick, this methodology has the potential to make environmental science more affordable and accessible; therefore, this study warrants further research.
Moving forward, resource-limited communities that are disproportionately burdened by poor air quality could utilize these green guardians to document local contamination hotspots. By doing so, they can gather the vital data needed to fiercely advocate for environmental justice, targeted remediation, and healthier urban spaces for everyone.
Original source:
Campbell T, Gwilliam III GF, Evans NM, Peltz K, Simpson G, Dussubieux L, Erazo E, Guare K, Krechner A, Long E, Maari S, Oguike I, Rice K, Zinke A, Christian C, Qazi-Lampert A, Henkin JM, Kreider D, Maves C, Merrill G, Moy P, Rodriguez Y, Ryan Z, von Konrat M (2026) Green guardians: Mosses as potential low-cost biomonitors of air pollution in urban Chicago. BioRisk 24: 55-67. https://doi.org/10.3897/biorisk.24.180507
The investigation, which was carried out through household surveys, focus group discussions, and field observations, revealed that local wildlife populations are under critical strain.
A new study published in the open-access journal BioRisk has highlighted a powerful wave of local support for wildlife conservation in the Hamer District of South Omo, Ethiopia, despite severe environmental pressures.
The investigation, which was carried out through household surveys, focus group discussions, and field observations, revealed that local wildlife populations are under critical strain. An overwhelming majority of the surveyed residents, precisely 82.3 per cent, reported a noticeable decline in wild animal numbers within their vicinity.
Map of Ethiopia showing the current study area (the Hamer District). Image credit: Zelalem Temesgen et al.
Participants identified deforestation and overgrazing as the most significant hazards to local biodiversity, with 63.5 per cent selecting forest clearing as the primary threat and 50.0 per cent identifying livestock overgrazing as the secondary threat. These human-induced activities are exacerbated by recurrent droughts and changing climate patterns, forcing pastoralist communities to venture deeper into natural habitats to seek fodder and water for their livestock.
Human induced fire in the Hamer District observed during the field visit. Image credit: Zelalem Temesgen et al.
Despite facing these daily challenges for survival, the local community demonstrated a remarkable commitment to environmental stewardship. The researchers found that 90.6 per cent of the respondents expressed an explicit willingness to participate actively in future wildlife conservation initiatives.
Focus group discussions held in Hamer District during the study. Image credit: Zelalem Temesgen et al.
Further, 96.9 per cent of those interviewed acknowledged that the responsibility to safeguard local species rests directly with the community itself, while 99 per cent stated that intervention programmes are an urgent necessity. Statistical modelling demonstrated that factors such as the specific locality, gender, marital status, and length of residence significantly influence an individual’s openness to conservation efforts.
Wildlife population status in the Hamer District as reported by survey respondents (%). Image credit: Zelalem Temesgen et al.
The study notes that local inhabitants traditionally interact with wildlife for various purposes, including utilising certain species for food, traditional remedies, or cultural decorations. However, these practices, combined with habitat loss, have pushed several animals to the brink, leaving the local presence of iconic species such as giraffes and ostriches highly uncertain.
To foster sustainable coexistence between humans and wild animals, the authors recommend implementing managed livestock husbandry practices and constructing dedicated water ponds to alleviate resource competition during dry spells.
They also advocate for the promotion of ecotourism, community-led management initiatives, and stricter enforcement of wildlife protection laws to curb illegal hunting and habitat destruction in the region.
Original source:
Temesgen Z, Biru Y, Gibru A (2026) Anthropogenic threats and challenges of wildlife conservation in Hamer District, South Omo, Ethiopia. BioRisk 24: 69-84. https://doi.org/10.3897/biorisk.24.175449
For more articles on biodiversity and ecosystem risk assessment, follow BioRisk on Facebook and Bluesky.
The agreement encompasses five key research and medical bodies, and allows corresponding authors to publish their findings without individual Article Processing Charges.
Pensoft and the University of Zurichhave signed a comprehensive Open Access (OA) agreement, starting a partnership that enables researchers at participating institutions to publish their findings in Pensoft’s peer-reviewed journals without incurring individual Article Processing Charges (APCs).
Under this new framework, publishing costs for corresponding authors affiliated with the respective institutions are 100% covered by a centralised institutional deposit secured by the University of Zurich. By removing financial barriers, the agreement encourages scientists to disseminate their work to both the academic community and the wider public, making research immediately and freely available upon publication.
This initiative ensures that research is shared under open licences in strict accordance with the FAIR principles—making data Findable, Accessible, Interoperable, and Reusable.
“We are excited to start this partnership with the University of Zurich and sign an agreement that reflects our strong commitment to inclusive and equitable open science. By supporting researcher-driven publishing, we continue to foster a sustainable environment for high-impact scientific communication.”
Prof. Lyubomir Penev, CEO of Pensoft
“We are pleased to extend our portfolio of gold open access journals, in which our researchers can publish their findings without paying individual APCs. We thereby strengthen our commitment to open research information.”
University Library Zurich
Are you affiliated with a research institution operating with OA agreements? Is your institution interested in helping resident researchers navigate the complex processes underpinning academic publishing and knowledge sharing? Reach out to <publishing@pensoft.net> to discuss a potential collaboration.
Content from more than 30 biodiversity journals published on the ARPHA Platform will now be archived in the Biodiversity Heritage Library (BHL), the world’s largest open-access digital library for biodiversity literature and archives.
A global consortium of natural history, botanical, research, and national libraries, BHL digitises and freely shares essential biodiversity materials. A critical resource for researchers, it provides vital access to material that might otherwise be difficult to obtain.
Under the agreement, over 16,000 articles published on Pensoft’s self-developed ARPHA Platform are now available on BHL. Both legacy content and new articles are made available on the platform, complete with full-text PDFs and all relevant metadata.
Thanks to this integration, content in our journals will become even more accessible and readily discoverable, helping researchers find the biodiversity information they need.
Prof. Lyubomir Penev
More content published on ARPHA will gradually be added to the BHL archive.
The publications will be included in the Library’s full-text search, allowing researchers to easily locate relevant biodiversity literature. Crucially, the scientific names within the articles will be indexed using the Global Names Architecture, enabling seamless discovery of information about specific taxa across the BHL collection.
“Pensoft is pleased to collaborate with BHL in our joint mission to support global biodiversity research through free access to knowledge. Thanks to this integration, content in our journals will become even more accessible and readily discoverable, helping researchers find the biodiversity information they need,” said Prof. Lyubomir Penev, CEO and founder of Pensoft and ARPHA.
The news comes soon after BHL announced it is about to face a major shift in its operation. From 2026, the Smithsonian Institution – one of BHL’s 10 founding members – will cease to host the administrative and technical components of BHL. As the consortium explores a range of options, the BHL team is confident that “the transition opens the door to a reimagined and more sustainable future for BHL.”
Yet another hectic year has passed for our team at Pensoft, so it feels right to look back at the highlights from the last 12 months, as we buckle up for the leaps and strides in 2025.
In the past, we have used the occasion to take you back to the best moments of our most popular journals (see this list of 2023 highlights from ZooKeys, MycoKeys, PhytoKeys and more!); share milestones related to our ARPHA publishing platform (see the new journals, integrations and features from 2023); or let you reminisce about the coolest research published across our journals during the year(check out our Top 10 new species from 2021).
In 2022, when we celebrated our 30th anniversary on the academic scene, we extended our festive spirit throughout the year as we dived deep into those fantastic three decades. We put up Pensoft’s timeline and finished the year with a New Species Showdown tournament, where our followers on (what was back then) Twitter voted twice a week for their favourite species EVER described on the pages of our taxonomic journals.
Spoiler alert: we will be releasing our 2024 Top 10 New Species on Monday, 23 December, so you’d better go to the right of this screen and subscribe to our blog!
As we realised we might’ve been a bit biased towards our publishing activities over the years, this time, hereby, we chose to present you a retrospection that captures our best 2024 moments from across the departments, and shed light on how the publishing, technology and project communication endeavours fit together to make Pensoft what it is.
In truth, we take pride in being an exponentially growing family of multiple departments that currently comprises over 60 full-time employees and about a dozen freelancers working from all corners of the world, including Australia, Canada, Belgium and the United Kingdom. Together, we are all determined to make sure we continuously improve our service to all who have trusted us: authors, reviewers, editors, client journals, learned societies, research institutions, project consortia and other external collaborators.
After all, great deeds are only possible when you team up with great like-minded people!
In 2024, at Pensoft, we were hugely pleased to see a significant growth in the published output at almost all our journals, including record-breaking numbers in both submissions and publications at flagship titles of ours, including the Biodiversity Data Journal, PhytoKeys and MycoKeys.
Later in 2024, our colleagues, who work together with our clients to ensure their journals comply with the requirements of the top scholarly databases before they apply for indexation, informed us that another two journals in our portfolio have had their applications to Clarivate’s Web of Science successfully accepted. These are the newest journal of the International Association of Vegetation Science: Vegetation and Classification, and Metabarcoding and Metagenomics: a journal we launched in 2017 in collaboration with a team of brilliant scientists working together at the time within the DNAquaNet COST Action.
In 2024, we also joined the celebrations of our long-time partners at the Museum für Naturkunde Berlin, whose three journals: Zoosystematics and Evolution, Deutsche Entomologische Zeitschrift and Fossil Record are all part of our journal portfolio. This year marked the 10th Open Access anniversary of the three journals.
In the meantime, we also registered a record in new titles either joining the Pensoft portfolio or opting for ARPHA Platform’s white-label publishing solution, where journal owners retain exclusivity for the publication of their titles, yet use ARPHA’s end-to-end technology and as many human-provided services as necessary.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev with Prof. Dr. Marc Stadler, Editor-in-Chief of IMA Fungus and President of the International Mycological Association at the Pensoft booth at the 12th International Mycological Congress (August, the Netherlands).
Amongst our new partners are the International Mycological Association who moved their official journal IMA Fungus to ARPHA Platform. As part of Pensoft’s scholarly portfolio, the renowned journal joins another well-known academic title in the field of mycology: MycoKeys, which was launched by Pensoft in 2011. The big announcement was aptly made public at this year’s 12th International Mycological Congress where visitors of the Pensoft stand could often spot newly elected IMA President and IMA Fungus Chief editor: Marc Stadler chatting with our founder and CEO Lyubomir Penev by the Pensoft/MycoKeys booth.
On our end, we did not stop supporting enthusiastic and proactive scientists in their attempt to bridge gaps in scientific knowledge. In January, we launched the Estuarine Management and Technologies journal together with Dr. Soufiane Haddout of the Ibn Tofail University, Morocco.
Later on, Dr. Franco Andreone (Museo Regionale di Scienze Naturali, Italy) sought us with the idea to launch a journal addressing the role of natural history museums and herbaria collections in scientific progress. This collaboration resulted in the Natural History Collections and Museomics journal, officially announced at the joint TDWG-SPNHC conference in Okinawa, Japan in August.
Around this time, we finalised our similarly exciting journal project in partnership with Prof. Dr. Volker Grimm (UFZ, Germany), Prof. Dr. Karin Frank (UFZ, Germany), Prof. Dr. Mark E. Hauber (City University of New York) and Prof. Dr. Florian Jeltsch (University of Potsdam, Germany). The outcome of this collaboration is called Individual-based Ecology: a journal that aims to promote an individual-based perspective in ecology, as it closes the knowledge gap between individual-level responses and broader ecological patterns.
The three newly-launched journals are all published under the Diamond Open Access model, where neither access, nor publication is subject to charges.
As you can see, we have a lot to be proud of in terms of our journals. This is also why in 2024 our team took a record number of trips to attend major scientific events, where we got the chance to meet face-to-face with long-time editors, authors, reviewers and readers of our journals. Even more exciting was meeting the new faces of scientific research and learning about their own take on scholarship and academic journals.
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev welcomed editors at PhytoKeys to the Pensoft-PhytoKeys-branded booth at the XX International Botanical Congress in July 2024 (Spain).
We cannot possibly comment on Pensoft’s tech progress in 2024 without mentioning the EU-funded project BiCIKL (acronym for Biodiversity Community Integrated Knowledge Library) that we coordinated for three years ending up last April.
This 36-month endeavour saw 14 member institutions and 15 research infrastructures representing diverse actors from the biodiversity data realm come together to improve bi-directional links between different platforms, standards, formats and scientific fields.
Following these three years of collaborative work, we reported a great many notable research outputs from our consortium (find about them in the open-science project collection in the Research Ideas and Outcomes journal, titled “Towards interlinked FAIR biodiversity knowledge: The BiCIKL perspective”) that culminated in the Biodiversity Knowledge Hub: a one-stop portal that allows users to access FAIR and interlinked biodiversity data and services in a few clicks; and also a set of policy recommendations addressing key policy makers, research institutions and funders who deal with various types of data about the world’s biodiversity, and are thereby responsible to ensuring there findability, accessibility, interoperability and reusability (FAIR-ness).
Apart from coordinating BiCIKL, we also worked side-by-side with our partners to develop, refine and test each other’s tools and services, in order to make sure that they communicate efficiently with each other, thereby aligning with the principles of FAIR data and the needs of the scientific community in the long run.
During those three years we made a lot of refinements to our OpenBiodiv: a biodiversity database containing knowledge extracted from scientific literature, built as an Open Biodiversity Knowledge Management System, and our ARPHA Writing Tool. The latter is an XML-based online authoring environment using a large set of pre-formatted templates, where manuscripts are collaboratively written, edited and submitted to participating journals published on ARPHA Platform. What makes the tool particularly special is its multiple features that streamline and FAIRify data publishing as part of a scientific publication, especially in the field of biodiversity knowledge. In fact, we made enough improvements to the ARPHA Writing Tool that we will be soon officially releasing its 2.0 version!
OpenBiodiv – The Open Biodiversity Knowledge Management System
ARPHA Writing Tool 2.0
Amongst our collaborative projects are the Nanopublications for Biodiversity workflow that we co-developed with KnowledgePixels to allow researchers to ‘fragment’ their most important scientific findings into machine-actionable and machine-interpretable statements. Being the smallest units of publishable information, these ‘pixels of knowledge’ present an assertion about anything that can be uniquely identified and attributed to its author and serve to communicate a single statement, its original source (provenance) and citation record (publication info).
Nanopublications for Biodiversity
In partnership with the Swiss-based Text Mining group of Patrick Ruch at SIB and the text- and data-mining association Plazi, we brought the SIB Literature Services (SIBiLS) database one step closer to solidifying its “Biodiversity PMC” portal and working title.
Understandably, we spent a lot of effort, time and enthusiasm in raising awareness about our most recent innovations, in addition to our long-standing workflows, formats and tools developed with the aim to facilitate open and efficient access to scientific data; and their integration into published scholarly work, as well as receiving well-deserved recognition for their collection.
We just can’t stress it enough how important and beneficial it is for everyone to have high-quality FAIR data, ideally made available within a formal scientific publication!
🗨️Imagine if ALL these links were provided as hyperlinks within a #scholarly publication!
Pensoft’s CTO Teodor Georgiev talks about innovative methods and good practices in the publication of biodiversity data in scholarly papers at the First national meeting of the Bulgarian Barcode of Life (BgBOL) consortium (December, Bulgaria).
🤔What is a Data Paper?
👍 A means to describe a #dataset – like the ones on @GBIF – in a standardised, widely accepted #scientific article format.
👇🧵Highlights from @LyuboPenev's talk at the int'l symposium "#BiodiversityData in montane & arid Eurasia" in Kazakhstan 🇰🇿
Pensoft’s CEO and founder Prof. Dr. Lyubomir Penev presenting his “Data papers on biodiversity” talk at the “Biodiversity data in montane and arid Eurasia” symposium jointly organized by GBIF and by the Institute of Zoology of Republic of Kazakhstan (November, Kazakhstan).
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📸Today, at the @EASEeditors symposium, our @teodorpensoft gave a sneak peek into the AI-assisted tools at @ARPHAplatform we have been working on (e.g. Word -> JATS XML conversion) and the #ARPHA Writing Tool 2.0 (coming up in early 2025)!🎉
Pensoft’s CTO Teodor Georgiev presents new features and workflows currently in testing at the ARPHA Writing Tool 2.0 at the EASE Autumn Symposium 2024 (online event).Pensoft’s Head of Journal development, Marketing and PR Iva Boyadzhieva talks about Pensoft’s data publishing approach and innovations at the German Ecological Society 53rd Annual Conference (September, Germany).
Pensoft as a science communicator
At our Project team, which is undoubtedly the fastest developing department at Pensoft, science communicators are working closely with technology and publishing teams to help consortia bring their scientific results closer to policy actors, decision-makers and the society at large.
Ultimately, bridging the notorious chasm between researchers and global politics boils down to mutual understanding and dialogue.
Pensoft’s communication team attended COP16 (November 2024, Colombia) along with partners at the consortia of CO-OP4CBD, BioAgora and RESPIN: three Horizon Europe projects, whose communication and dissemination is led by Pensoft.
Throughout 2024, the team, comprising 20 science communicators and project managers, has been working as part of 27 EU-funded project consortia, including nine that have only started this year (check out all partnering projects on the Pensoft website, ordered from most recently started to oldest). Apart from communicating key outcomes and activities during the duration of the projects, at many of the projects, our team has also been actively involved in their grant proposal drafting, coordination, administration, platform development, graphic and web design and others (see all project services offered by Pensoft to consortia).
📸As leaders of the “Stakeholder engagement, comms & dissemination” WP at @BCubedProject, we joined the annual meeting to report on project branding, #scicomm & #DataManagement.
Naturally, we had a seat on the front row during many milestones achieved by our partners at all those 27 ongoing projects, and communicated to the public by our communicators.
Amongst those are the release of the InsectsCount web application developed within the Horizon 2020 project SHOWCASE. Through innovative gamification elements, the app encourages users to share valuable data about flower-visiting insects, which in turn help researchers gain new knowledge about the relationship between observed species and the region’s land use and management practices (learn more about InsectsCount on the SHOWCASE prroject website).
Another fantastic project output was the long-awaited dataset of maps of annual forest disturbances across 38 European countries derived from the Landsat satellite data archive published by the Horizon Europe project ForestPaths in April (find more about the European Forest Disturbance Atlas on the ForestPaths project website).
In a major company highlight, last month, our project team participated in COP29 in Baku, Azerbaijan with a side event dedicated to the role of open science and science communication in climate- and biodiversity-friendly policy.
Pensoft’s participation at COP29 – as well as our perspective on FAIR data and open science – were recently covered in an interview by Exposed by CMD (a US-based news media accredited to cover the event) with our science communicator Alexandra Korcheva and project manager Boris Barov.
You see, A LOT of great things worth celebrating happened during the year for us at Pensoft: all thanks to ceaselessly flourishing collaboration based on transparency, trust and integrity. Huge ‘THANK YOU!’ goes to everyone who has joined us in our endeavours!
Here’s to many more shared achievements coming up in 2025!
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In a new content syndication partnership, scholarly publisher and technology provider Pensoft has made scholarly articles from 16 journals discoverable from ScienceDirect.
In a new content syndication partnership, scholarly publisher and technology provider Pensoft has made scholarly articles from 16 journals discoverable from ScienceDirect.
Through this collaboration, content from 16 journals published by Pensoft will join 1.4 million open-access articles currently available from ScienceDirect. This way, they will reach even more people: researchers will find relevant academic papers more efficiently, while study authors will get increased visibility of their work, ultimately benefiting the scholarly community and facilitating knowledge exchange. According to the latest data, ScienceDirect is being visited by 20 million researchers each month.
Serving as a hub for scientific research, ScienceDirect offers access to scholarly content from thousands of journals. Making millions of research articles available to its users, it makes it easy to explore and access the latest research findings across a wide thematic range.
The move reaffirms Pensoft’s longstanding commitment to advancing open-access publishing and making high-quality academic research accessible to all.
“We at Pensoft are happy to share that content from our journals is now available to ScienceDirect users. Our mission as a publisher has always been to make sure scientific outputs reach as many people as possible, and we are really excited about making this extra step towards global visibility, discoverability, reusability and citability,” said Pensoft’s founder and CEO, Lyubomir Penev.
Rose L’Huillier, SVP Researcher Products, Data Science, and Analytics, Elsevier, said: “We are excited about our new partnership with Pensoft. This is a win-win. This collaboration aims to provide Pensoft’s published authors with enhanced visibility as their articles will now be discoverable by over 19 million scientists on ScienceDirect. We also hope that continuing to partner with other publishers will allow us to learn together how we can continue to improve the research publishing ecosystem as a whole and promote the values we all share such as safeguarding trust in science.”
Below you can find a list of the 16 participating journals published by Pensoft and/or using Pensoft’s scholarly publishing platform ARPHA:
ScienceDirect is an essential information resource for over 19,000,000 scientists worldwide, and home to many respected journals and prestigious society titles. Researchers can now search and browse articles from participating publishers, alongside Elsevier content on ScienceDirect. This collaboration brings together partner publishers’ unique and high impact academic journals with ScienceDirect’s capabilities in research dissemination and advanced features for discoverability.
Guest blog post by Stephany Toschkova, Sevginar Ibryamova, Darina Ch. Bachvarova, Teodora Koynova, Elitca Stanachkova, Radoslav Ivanov, Nikolay Natchev, Tsveteslava Ignatova-Ivanova
One of the main problems of the world’s oceans, reported by many scientific studies, is microplastic pollution. It is also one of the main sources of pollution in the Black Sea. Our new study in BioRiskdetails microplastic contamination in five fish species important for commercial fishing (Garfish, Мullet, Knout goby, Pontic shad, and Mediterranean horse mackerel). The fish were collected from the Sozopol area of the Bulgarian Black Sea coast.
Mediterranean horse mackerel. Photo by Donald Davesne
Knout Goby. Photo by Aleksandr_Levon
Мullet. Photo by Roberto Pillon
Our results show a wide variety of micropollutants originating from commonly used items such as plastic cups, stirrers, bags, soft drink bottles, fishing nets, packaging, аnd personal hygiene products. These objects systematically enter the Black Sea and degrade into microplastic particles. Microplastics (MPs) were found in all studied tissues of the fish in the form of pellets, fibers and fragments. Pellets were found most frequently, followed by irregularly shaped fragments, while fibers were the least numerous.
Stereomicroscope picture of morphological types of microplastics (arrowheads) recognized in the studied specied from: A) Garfish; B) Mullet C) Pontic shad and D) Mediterranean horse mackerel.
The bulk of the isolated plastics are made of polyethylene (PE) and polyethylene terephthalate (PET). PE is found in plastic bottles, cups, stirrers, and plastic bags. This polymer is very light and floats on the surface of the sea because its density is lower than that of water. PET, on the other hand, is denser than water and more likely to sink and accumulate in it and in organisms living on the seafloor. These polymers are widely used in fabrics, nets, ropes, and strings used for fishing, one of the main economic activities in the Black Sea. The predominant polymer type, PE, corresponds to the content of manufactured plastics all around Europe, as almost half of the plastics produced in Europe are reported as PE.
The sinking and sedimentation of plastics relate to the fact that the upper layer of the Black Sea is less dense than that of other seas. Furthermore, the weight of these particles increases due to the accumulation of marine plants and nutrients on them, and this can affect the distribution of plastics and their sedimentation on the seabed.
A satellite image of the Black Sea. Photo by NASA/GSFC/MODIS
Judging by the obtained results and the amount and type of polymers found in the study and the literature, the source of contamination, in our opinion, can be mainly attributed to domestic wastewater discharges coming from the washing of synthetic fabrics. In Bulgaria, wastewater is discharged – directly or after purification – into marine and freshwater ecosystems, as is the case in other neighbouring countries along the Black Sea coast. However, detailed studies are needed to prove this hypothesis.
Considering the wide variety of MP types detected in the digestive tracts of the fish, we assume that they regularly ingested MPs during feeding. Many nutrients are also held on the plastic particles, which deceives the fish into perceiving them as food.
Microplastics under a microscope. Photos by GTM NERR
It has been reported that plastics smaller than 1000 μm can reach the digestive tract or the gills of fish, and in turn can cause adverse effects such as a weak immune response or reduced fertility.
MPs can also accumulate in predatory fish species. Unfortunately, very limited research was performed on bioaccumulation and biomagnification in food webs, therefore more studies are needed to reach this conclusion.
MPs enter seawater food chains in different pathways and threaten entire ecosystems through their ability to transport pollutants, pathogenic microorganisms, and alien species. Bearing in mind the intensifying economic activity on the Black Sea coast and the consequent influence on the riverine water quality, river mouths can be considered potential sources of MPs. Particularly concerning is the area near the Kamchia River mouth, which is the biggest intra-territorial river in Bulgaria, entering directly into the Black Sea, with a catchment area of more than 5 300 km2 . This catchment and the entire Black Sea coast, where agriculture is well developed is a potential source of MPs, which have the ability to absorb and release toxic chemicals of organic and inorganic origin such as bisphenol A, PCBs and DDT, creating an additional potential risk to human health.
A satellite image showing the Kamchia River mouth.
Humans are exposed to BPA in the environment they live in, from the air we breathe to the food and drinks we consume. So, even if BPA intake is below accepted limits, this does not guarantee that the additive will not accumulate and cause more pronounced effects and chronic toxicity in the food chain, given its tendency to accumulate.
It is important that future research determines the toxicological side effects of plastic ingestion for fish communities in both benthic and pelagic habitats. However, even if we stop introducing plastics into the water system, both groups of fish will continue to be impacted, since the number of microplastics can increase due to the breakdown of larger plastics in the environment.
This study shows the need to carry out further studies of microplastics using different types of microscopic and spectral analysis. Even though microplastics may not pose a risk to humans who consume fish, these contaminants pose a potential risk to marine food webs and endangered species. We found particles of different sizes, types and colours in different fish species, and believe the variability of polymer types in fish can indicate the polymer types in water to some extent. Our results show that fish are important as ecological bioindicators and serve as a basis for future studies on microplastic pollution in tourist sandy beaches.
Research article:
Toschkova S, Ibryamova S, Bachvarova DCh, Koynova T, Stanachkova E, Ivanov R, Natchev N, Ignatova-Ivanova T (2024) The assessment of the bioaccumulation of microplastics in key fish species from the Bulgarian aquatory of the Black Sea. BioRisk 22: 17-31. https://doi.org/10.3897/biorisk.22.117668
Leading scholarly publisher Pensoft has announced a strategic collaboration with R Discovery, the AI-powered research discovery platform by Cactus Communications, a renowned science communications and technology company. This partnership aims to revolutionize the accessibility and discoverability of research articles published by Pensoft, making them more readily available on R Discovery to its over three million researchers across the globe.
R Discovery, acclaimed for its advanced algorithms and an extensive database boasting over 120 million scholarly articles, empowers researchers with intelligent search capabilities and personalized recommendations. Through its innovative Reading Feed feature, R Discovery delivers tailored suggestions in a format reminiscent of social media, identifying articles based on individual research interests. This not only saves time but also keeps researchers updated with the latest and most relevant studies in their field.
Open Science is much more than cost-free access to research output.
Lyubomir Penev
One of R Discovery’s standout features is its ability to provide paper summaries, audio readings, and language translation, enabling users to quickly assess a paper’s relevance and enhance their research reading experience significantly.
With over 2.5 million app downloads and upwards of 80 million journal articles featured, the R Discovery database is one of the largest scholarly content repositories.
“At Pensoft, we do realise that Open Science is much more than cost-free access to research outputs. It is also about easier discoverability and reusability, or, in other words, how likely it is for the reader to come across a particular scientific publication and, as a result, cite and build on those findings in his/her own studies. By feeding the content of our journals into R Discovery, we’re further facilitating the discoverability of the research done and shared by the authors who trust us with their work,” said ARPHA’s and Pensoft’s founder and CEO Prof. Lyubomir Penev.
Abhishek Goel, Co-Founder and CEO of Cactus Communications, commented on the collaboration, “We are delighted to work with Pensoft and offer researchers easy access to the publisher’s high-quality research articles on R Discovery. This is a milestone in our quest to support academia in advancing open science that can help researchers improve the world.”
So far, R Discovery has successfully established partnership with over 20 publishers, enhancing the platform’s extensive repository of scholarly content. By joining forces with R Discovery, Pensoft solidifies its dedication to making scholarly publications from its open-access, peer-reviewed journal portfolio easily discoverable and accessible.
Pseudomonas aeruginosa is a bacterial strain that can be responsible for several human diseases: the most serious include malignant external otitis, endophthalmitis, endocarditis, meningitis, pneumonia, and septicemia.
The environments in which these bacteria are most frequently found include soil, plants, and water. They can even be found on human and animal skin, without causing illness, in a process known as bacterial colonisation. Microbiological research can help establish the cause of certain infectious diseases, making it easier to choose the best treatment. This is why it is important to find a quick and easy way to identify these bacteria. A new study, published in the open-access journal BioRisk, explored this by applying spectroscopic techniques for quick analysis directly from an object, which, in this case, was turtle skin.
Sampling of biological material from turtle skin before further microbiological analysis and Raman spectroscopy.Credit Inta Umbraško
“Microbial organisms play key roles in animal health and ecology. The European pond turtle often lives in city Zoo gardens and private houses. Often, the most commonly found bacteria from turtle skin surfaces was Pseudomonas species,” says Aleksandrs Petjukevics of Daugavpils University, whose team conducted the study.
What is Raman spectroscopy?
“Classical microbiological research techniques have several disadvantages: first of all, it is a rather lengthy process. The minimum period is 3-4 days, but many days and even weeks may pass before the isolated pathogen is accurately identified, and it uses expensive chemicals and resources,” says Aleksandrs Petjukevics. As an alternative, spectrometry makes it possible to identify a prepared sample of a microorganism while reducing the identification time to 5-30 minutes.
Raman spectra represent an ensemble of signals that arise from the molecular vibrations of individual cell components of gram-negative bacteria, integrating over proteins, lipids, and carbohydrates. “This non-destructive chemical analysis technique provides detailed information about chemical structure, phase and polymorphy, crystallinity, and molecular interactions. It is based on the interaction of light with the chemical bonds within a material,” he says.
Research results and implications
The study’s findings showed that Pseudomonas bacteriacan be quickly identified using this detection technology, with excellent analytical and diagnostic sensitivity, making it a dependable technique.
Unlike other methods, this technique does not require long-term bacterial sample preparation and expensive reagents, which makes it promising for studying other strains of bacteria.
“This study demonstrated the ability to obtain fast and high-quality Raman spectra of bacterial cells using vibrational spectroscopy,” says Aleksandrs Petjukevics. “Raman spectroscopy can be considered an express method for identifying microorganisms. It holds great potential for future research involving different microorganisms.”
Research article:
Petjukevičs A, Umbraško I, Škute N (2023) Prospects and possibilities of using Raman spectroscopy for the identification of Pseudomonas aeruginosa from turtle Emys orbicularis (Linnaeus, 1758) skin. BioRisk 21: 19-28. https://doi.org/10.3897/biorisk.21.111983
