Pensoft launches new journal: Individual-based Ecology

IBE joins a number of open-access ecology journals published by Pensoft

Scholarly publisher and technology provider Pensoft has launched Individual-based Ecology (IBE), a new peer-reviewed, diamond open-access journal established to promote an individual-based perspective in ecology.

IBE aims to bridge the gap between individual-level responses and broader ecological patterns. In the face of global challenges, the journal is looking to contribute to both a better understanding and new sets of predictions of how ecological systems will respond to anthropogenic change. It aims to support the development of appropriate mitigation and restoration measures by focusing on the entities that actually and directly respond to change, i.e. individual organisms.

The journal embraces basic and applied, theoretical and empirical research in terrestrial and aquatic ecology. It welcomes contributions that incorporate data or novel insights about individual organisms and their interactions that are relevant to explaining system-level dynamics. IBE will publish a wide range of articles, including empirical, experimental, and modeling studies, as well as reviews, perspectives, and methodological papers.

As a diamond open-access journal, IBE is currently free to publish and free to read, ensuring that all published research is freely accessible to the global community.

The journal will utilise Pensoft’s innovative ARPHA platform, known for its robust support of academic publishing and efficient dissemination of research. Thanks to its fast-track publishing solution, the new journal offers a seamless, end-to-end publishing experience, encompassing all stages between manuscript submission and article publication, indexation, dissemination and permanent archiving. The publishing services provided by ARPHA also include a variety of human-provided services and integrations with third-party providers, intended to maximise the reach and usability of scholarly knowledge published in IBE.

A banner of IBE presented at the German Ecological Society’s 53rd annual conference (9-13 September 2024, Freising, Germany).

IBE will be led by four editors-in-chief: Prof. Dr. Volker Grimm and Prof. Dr. Karin Frank of Helmholtz Center for Environmental Research – UFZ, Prof. Dr. Mark E. Hauber of The City University of New York, and Prof. Dr. Florian Jeltsch of the University of Potsdam.

„We are excited to launch Individual-based Ecology, a new, promising journal that will contribute to a better understanding of ecological systems and how we interact with them,” said Prof Lyubomir Penev, founder and CEO of ARPHA and Pensoft.

“The time has come to establish individual-based ecology as an important complement to all other branches of ecology, both because we need it to fully understand and predict the response of ecological systems to change, and because empirical and modelling approaches have reached a level where the collection and use of individual-based data has become possible,” says Prof Volker Grimm, one of the editors-in-chief.

“It is exciting to be able to launch a journal that embraces ecological principles at the level of individuals across any and all lineages of life on our planet”, notes Prof. Mark E. Hauber, also an editor-in-chief. 

“This new journal will promote nothing less than a paradigm shift in ecological thinking from averaging approaches to a science focused on the fundamental agents of change, i.e. individual organisms. Systematically recognising the importance of individual variation in ecological systems will transform our fundamental understanding of how biodiversity and its components emerge from individual responses and interactions, and how the emerging levels of organisation will respond to changing environments,” said Prof Florian Jeltsch from the editorial team.  

IBE joins a number of open-access ecology journals published by Pensoft.

For more information on the journal’s focus and scope and guidelines to authors, visit IBE’s website and follow it on Facebook and X.

Determinants of citation impact

Put together, formal parameters other than journal impact – such as the brevity of an article’s title – turned out to be stronger citation predictors.

Guest blog post by Jürgen Dengler

What makes a paper successful?” is something authors would like to know when submitting a manuscript and editors when deciding on the acceptance of papers. 

One answer is: “Write an exciting paper on a relevant topic with up-to-date methods”. 

While this is certainly true, most authors feel that this is not the whole truth. The enormous efforts some authors invest in getting their paper accepted in a “high-rank” journal reflect the belief that the publication venue influences the scientific impact of a paper. Other authors spend quite some time in finding a “fancy” title for their contribution.

But do such “formal” aspects actually influence the impact of articles and, if so, to which degree and which are the most relevant ones? 

Astonishingly, there is very little published evidence on these aspects. 

Thus, I conducted an empirical study using my own publication output over the years. With almost 200 papers in over 50 indexed journals, it already allows some generalisations. With the three IAVS journals, Journal of Vegetation Science, Applied Vegetation Science and Vegetation Classification and Survey, being among the preferred outlets, the journal portfolio is probably also quite similar to that of other IAVS members. 

As a common currency for citation impact, I used the Field-Weighted Citation Impact (FWCI), provided by the Scopus database. While the absolute number of citations is not suitable for a meaningful comparison between papers as the number of citations always increases with time since publication, FWCI standardised citations compared to all articles published in the same year in the same subject field and as the same article type (e.g. research article vs. review article). 

A FWCI of 1 means that an article is cited as much as the average, a FWCI of 2 refers to twice as many citations as an average article, etc. Scopus also provides a corresponding measure to FWCI at the journal level, namely the Source Normalized Impact per Paper (SNIP), which essentially is the mean of the FWCI values of all papers in that journal in the respective period.

According to the multiple regression analysis, journal impact (SNIP) was the strongest predictor of the article impact. 

However, alone it explained only 26.8% of the variance while other formal parameters together explained 31.5% of the variance. 

Among those, the brevity of the title was most influential. Each word less in the title led to 9% more citations. 

Further, both article length and author number had a positive influence on citations.

Publishing in a special feature increased the citation rate by 43%

By contrast, open access or formulating titles as questions or factual statements did not significantly influence citation rates.

In conclusion, selecting a high-impact journal has less influence on the article impact than many people believe – the citation impact of different articles in one journal typically varies more than the mean citation impact between different journals.

For authors, the easiest way to increase the impact of a given article is to shorten the title as much as possible. 

Caption: Variation of the Field-Weighted Citation Impact (FWCI) values of articles in journals represented by at least five articles in the analysed sample, with box height proportional to the number of included papers. All three IAVS journals were well represented. The variation of citation impact within individual journals was very large (note the log-scale of the x-axis). For example, the best cited articles of the author in JVS, AVS and VCS all had a considerably better citation performance than the single Nature paper co-authored by the author (FWCI = 3.70).

Associated journal article:

Dengler J (2024) Determinants of citation impact. Vegetation Classification and Survey 5: 169-177. https://doi.org/10.3897/VCS.126956.

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Originally published on the Vegetation Science Blog: Official blog post of the IAVS journals.

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You can follow the Vegetation Classification and Survey (VCS) journal on X (formerly Twitter) and Facebook.

The International Biogeography Society relaunches flagship journal Frontiers of Biogeography on ARPHA platform

“This switch of our journal to a cutting-edge platform, and its committed team of editors, should continue to raise the journal’s visibility and impact,” comments Prof. Dr. Susanne Renner, TIBS President.

The International Biogeography Society (TIBS) has relaunched its flagship open-access scientific journal, Frontiers of Biogeography (FoB), on the ARPHA platform, where it will be co-published with Pensoft Publishers.

This collaboration underscores the society’s commitment to maintaining high-quality, high-visibility and low-cost open-access publishing for the biogeographical community.

“This switch of our journal to a cutting-edge platform, and its committed team of editors, should continue to raise the journal’s visibility and impact,”

comments Prof. Dr. Susanne Renner, TIBS President.

Established by TIBS in 2009, Frontiers of Biogeography serves as an independent forum for research dissemination, and publishes studies on all geographical variations of life at all levels of organisation. The journal adheres to rigorous academic standards, reflecting the mission of TIBS to promote and advance public understanding of biogeographical sciences. 

The journal’s editorial leadership includes Prof. Robert J. Whittaker (University of Oxford, United Kingdom), Dr. Janet Franklin (San Diego State University, USA) and Prof. Mark J. Costello (Nord University, Norway), all esteemed figures in the field.

Frontiers of Biogeography was launched on the ARPHA Platform on the 1st of July 2024. The platform is now open for new submissions and offers a robust review and publication process. Articles and supplementary materials published on ARPHA will be distributed under the Creative Commons Attribution Licence (CC BY 4.0), ensuring wide accessibility and reuse. All previously published issues on the e-Scholarship platform will remain freely accessible, ensuring the continuity of knowledge dissemination.

Frontiers of Biogeography has recently been selected for inclusion in the Web of Science™. Beginning with volume 14(1), articles will be indexed in Emerging Sources Citation Index, Zoological Record, Biological Abstracts, and BIOSIS Previews, significantly enhancing the journal’s visibility.

Furthermore, the journal’s latest Scopus CiteScore of 4.3 places it in the Q1 category for Ecology and Ecology, Evolution, Behaviour and Systematics, and elevates it from Q3 to Q2 in the Global and Planetary Change category.

I am looking forward to working with the new platform and to the start of a new partnership with our colleagues at Pensoft Publishers. This arrangement underlines the commitment of The International Biogeography Society to the growth and success of Frontiers of Biogeography as a service to our members and the broader scientific community,”

stated Prof. Dr. Robert J. Whittaker, Editor-in-Chief.

In these days of sometimes exorbitant costs to pay publication charges by some of the big publishers, TIBS and Pensoft are joining forces to make it possible for all authors to be able to publish their work at reasonable costs while maintaining the high scholarly standards of peer-review and editorial management which are the foundation of good science,”

added Prof. Dr. Mark J. Costello, Co-Editor-in-Chief.

“We are excited to welcome Frontiers of Biogeography to the ARPHA Platform and look forward to a successful, open-access future. This partnership aligns with our mission to support scientific research through innovative publishing solutions,”

said Prof. Dr. Lyubomir Penev, CEO and founder of Pensoft Publishers.

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Visit the Frontiers of Biogeography’s new website at https://biogeography.pensoft.net/. Use the Email alert field on the homepage to follow the latest publications, news, and highlights from Frontiers of Biogeography.

You can also follow the journal on X (formerly Twitter) at @newbiogeo.

Keep up to date with the latest from TIBS by following them on X (@Biogeography) and joining the society’s Facebook group.

Vegetation Classification and Survey featured by Web of Science four years after its launch

Vegetation Classification and Survey will soon receive its very first Journal Impact Factor.

Only four years after the inaugural editorial by Prof Dr Florian Jansen, Dr Idoia Biurrun, Prof Dr Jürgen Dengler and Dr Wolfgang Willner that officialised the third and still youngest scientific journal of the International Association of Vegetation Science (IAVS), the Vegetation Classification and Survey (VCS) journal successfully completed the rigorous quality and integrity assessment at Web of Science (WoS).

Late May 2024 saw the whole content ever published in VCS added to the Core Collection of the renowned academic platform, further boosting its discoverability, accessibility and reliability to researchers and other stakeholders alike, confirms the Indexing team of Pensoft and the ARPHA scholarly publishing platform.

“Many thanks to IAVS as owner and Pensoft as publisher, who made this success story possible. However, most of all, this early inclusion into the Web of Science Core Edition is due to the good articles of our authors and the great volunteer service our Associate Editors, Guest Editors, Linguistic Editors, Editorial Review Board members, and other reviewers did and do for VCS,”

the Chief Editors comment on the latest success.

The news means that VCS is soon to receive its very first Journal Impact Factor (JIF): allegedly the most popular and sought after journal-level metric, which annually releases the citation (or “impact”) rate of a given scholarly journal over the last period. By the end of next month, for example, we will know how different journals indexed by WoS have performed compared to each other, based on the number of citations received in 2023 (from other journals indexed by WoS) for papers published in 2021 and 2022 combined.

In 2022, VCS and its all-time publications were also featured by the largest and similarly acclaimed scientific database: Scopus, thus receiving its very first Scopus CiteScore* last June. At 2.0, the result instantly gave a promise of the widely appreciated content published in the journal.

In an editorial, published in the beginning of 2024, the Chief Editors assessed the performance of the journal and analysed the available data from Scopus to predict the citation rates for the journal in the next few years. There, the team also compared the journal’s latest performance with similar journals, including the other two journals owned by the IAVS (i.e. Applied Vegetation Science and Journal of Vegetation Science). Given that as of May 2024 the Scopus CiteScoreTracker for VCS reads 2.5, their optimistic forecasts seem rather realistic.

“The VCS articles of 2023 were on average even better cited than those in Applied Vegetation Science of the same year and had reached about the same level as Journal of Vegetation Science and Biodiversity and Conservation,”

they concluded.

In a recent post, published on the IAVS blog, on behalf of the four VCS Chief Editors, Prof. Dr. Jürgen Dengler further comments on the latest achievements of the journal, while also highlighting particularly valued recent publications.

The team also uses the occasion to invite experts in the field of vegetation science to submit their manuscripts in 2024 to make use of the generous financial support by the IAVS. Given the increasing interest in VCS, the journal also invites additional linguistic editors, as well as reviewers who wish to join the Editorial Review Board.

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Keep yourself updated with news from Vegetation Classification and Survey on X (formerly Twitter) and Facebook. You can also follow IAVS on X and join the Association’s public group on Facebook

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*Note that the Scopus database features a different selection of scientific journals compared to Web of Science to estimate citation metrics. The indexers are also using different formulae, where the former looks into citations made in the last two complete years for eligible papers published in the same years.

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About Vegetation Classification and Survey:

Vegetation Classification and Survey (VCS) is an international, peer-reviewed, online journal on plant community ecology published on behalf of the International Association for Vegetation Science (IAVS). It is devoted to vegetation survey and classification at any organisational and spatial scale and without restriction to certain methodological approaches.

The scope of VCS is focused on vegetation typologies and vegetation classification systems, their methodological foundation, their development and their application. The journal publishes original papers that develop new typologies as well as applied studies that use such typologies, for example, in vegetation mapping, ecosystem modelling, nature conservation, land use management, or monitoring. Particularly encouraged are methodological studies that design and compare tools for vegetation classification and mapping, such as algorithms, databases and nomenclatural principles, or are dealing with the conceptual and theoretical bases of vegetation survey and classification. 

VCS also includes two permanent collections (or sections): “Ecoinformatics” and “Phytosociological Nomenclature”. 

About Pensoft:

Pensoft is an independent, open-access publisher and technology provider, best known for its biodiversity journals, including ZooKeys, Biodiversity Data Journal, Phytokeys, Mycokeys, One Ecosystem, Metabarcoding and Metagenomics and many others. To date, the company has continuously been working on various tools and workflows designed to facilitate biodiversity data findability, accessibility, discoverability and interoperability.

About ARPHA Platform:

Pensoft publishes its journals on its self-developed ARPHA publishing platform: an end-to-end, narrative- and data-integrated publishing solution that supports the full life cycle of a manuscript, from authoring to reviewing, publishing and dissemination. ARPHA provides accomplished and streamlined production workflows that can be heavily customised by client journals not necessarily linked to Pensoft as a publisher, since ARPHA is specially targeted at learned societies, research institutions and university presses. The platform enables a variety of publishing models through a number of options for branding, production and revenue models. Alongside its elaborate and highly automated publishing tools and services, ARPHA provides a range of human-provided services, such as science communication and assistance in indexation at databases like Web of Science and Scopus, to provide a complete full-featured publishing solution package.

Pensoft took a BiCIKL ride to Naturalis to report on a 3-year endeavour towards FAIR data

Three years ago, the BiCIKL consortium took to traverse obstacles to wider use and adoption of FAIR and linked biodiversity data.

Leiden – also known as the ‘City of Keys’ and the ‘City of Discoveries’ – was aptly chosen to host the third Empowering Biodiversity Research (EBR III) conference. The two-day conference – this time focusing on the utilisation of biodiversity data as a vehicle for biodiversity research to reach to Policy – was held in a no less fitting locality: the Naturalis Biodiversity Center

On 25th and 26th March 2024, the delegates got the chance to learn more about the latest discoveries, trends and innovations from scientists, as well as various stakeholders, including representatives of policy-making bodies, research institutions and infrastructures. The conference also ran a poster session and a Biodiversity Informatics market, where scientists, research teams, project consortia, and providers of biodiversity research-related services and tools could showcase their work and meet like-minded professionals.

BiCIKL stops at the Naturalis Biodiversity Center

The main outcome of the BiCIKL project: the Biodiversity Knowledge Hub, a one-stop knowledge portal to interlinked and machine-readable FAIR data.

The famous for its bicycle friendliness country also made a suitable stop for BiCIKL (an acronym for the Biodiversity Community Integrated Knowledge Library): a project funded under the European Commission’s Horizon 2020 programme that aimed at triggering a culture change in the way users access, (re)use, publish and share biodiversity data. To do this, the BiCIKL consortium set off on a 3-year journey to build on the existing biodiversity data infrastructures, workflows, standards and the linkages between them.

Many of the people who have been involved in the project over the last three years could be seen all around the beautiful venue. Above all, Naturalis is itself one of the partnering institutions at BiCIKL. Then, on Tuesday, on behalf of the BiCIKL consortium and the project’s coordinator: the scientific publisher and technology innovator: Pensoft, Iva Boyadzhieva presented the work done within the project one month ahead of its official conclusion at the end of April.

As she talked about the way the BiCIKL consortium took to traverse obstacles to wider use and adoption of FAIR and linked biodiversity data, she focused on BiCIKL’s main outcome: the Biodiversity Knowledge Hub (BKH).

Key results from the BiCIKL project three years into its existence presented by Pensoft’s Iva Boyadzhieva at the EBR III conference.

Intended to act as a knowledge broker for users who wish to navigate and access sources of open and FAIR biodiversity data, guidelines, tools and services, in practicality, the BKH is a one-stop portal for understanding the complex but increasingly interconnected landscape of biodiversity research infrastructures in Europe and beyond. It collates information, guidelines, recommendations and best practices in usage of FAIR and linked biodiversity data, as well as a continuously expanded catalogue of compliant relevant services and tools.

At the core of the BKH is the FAIR Data Place (FDP), where users can familiarise themselves with each of the participating biodiversity infrastructures and network organisations, and also learn about the specific services they provide. There, anyone can explore various biodiversity data tools and services by browsing by their main data type, e.g. specimens, sequences, taxon names, literature.

While the project might be coming to an end, she pointed out, the BKH is here to stay as a navigation system in a universe of interconnected biodiversity research infrastructures.

To do this, not only will the partners continue to maintain it, but it will also remain open to any research infrastructure that wishes to feature its own tools and services compliant with the linked and FAIR data requirements set by the BiCIKL consortium.

On the event’s website you can access the BiCIKL’s slides presentation as presented at the EBR III conference.

What else was on at the EBR III?

Indisputably, the ‘hot’ topics at the EBR III were the novel technologies for remote and non-invasive, yet efficient biomonitoring; the utilisation of data and other input sourced by citizen scientists; as well as leveraging different types and sources of biodiversity data, in order to better inform decision-makers, but also future-proof the scientific knowledge we have collected and generated to date.

Project’s coordinator Dr Quentin Groom presents the B-Cubed’s approach towards standardised access to biodiversity data for the use of policy-making at the EBR III conference.

Amongst the other Horizon Europe projects presented at the EBR III conference was B-Cubed (Biodiversity Building Blocks for policy). On Monday, the project’s coordinator Dr Quentin Groom (Meise Botanic Garden) familiarised the conference participants with the project, which aims to standardise access to biodiversity data, in order to empower policymakers to proactively address the impacts of biodiversity change.

You can find more about B-Cubed and Pensoft’s role in it in this blog post.

On the event’s website you can access the B-Cubed’s slides presentation as presented at the EBR III conference.

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Dr France Gerard (UK Centre for Ecology & Hydrology) talks about the challenges in using raw data – including those provided by drones – to derive habitat condition metrics.

MAMBO: another Horizon Europe project where Pensoft has been contributing with expertise in science communication, dissemination and exploitation, was also an active participant at the event. An acronym for Modern Approaches to the Monitoring of BiOdiversity, MAMBO had its own session on Tuesday morning, where Dr Vincent Kalkman (Naturalis Biodiversity Center), Dr France Gerard (UK Centre for Ecology & Hydrology) and Prof. Toke Høye (Aarhus University) each took to the stage to demonstrate how modern technology developed within the project is to improve biodiversity and habitat monitoring. Learn more about MAMBO and Pensoft’s involvement in this blog post.

MAMBO’s project coordinator Prof. Toke T. Høye talked about smarter technologies for biodiversity monitoring, including camera traps able to count insects at a particular site.

On the event’s website you can access the MAMBO’s slides presentations by Kalkman, Gerard and Høye, as presented at the EBR III conference.

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The EBR III conference also saw a presentation – albeit remote – from Prof. Dr. Florian Leese (Dean at the University of Duisburg-Essen, Germany, and Editor-in-Chief at the Metabarcoding and Metagenomics journal), where he talked about the promise, but also the challenges for DNA-based methods to empower biodiversity monitoring. 

Amongst the key tasks here, he pointed out, are the alignment of DNA-based methods with the Global Biodiversity Framework; central push and funding for standards and guidance; publication of data in portals that adhere to the best data practices and rules; and the mobilisation of existing resources such as the meteorological ones. 

Prof. Dr. Florian Leese talked about the promise, but also the challenges for DNA-based methods to empower biodiversity monitoring. He also referred to the 2022 Forum Paper: “Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms” by R. Henrik Nilsson et al.

He also made a reference to the Forum Paper “Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms” by R. Henrik Nilsson et al., where the international team provided a brief rationale and an overview of guidelines targeting the principles and approaches of exposing DNA-derived occurrence data in the context of broader biodiversity data. In the study, published in the Metabarcoding and Metagenomics journal in 2022, they also introduced a living version of these guidelines, which continues to encourage feedback and interaction as new techniques and best practices emerge.

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You can find the programme on the conference website and see highlights on the conference hashtag: #EBR2024.

Don’t forget to also explore the Biodiversity Knowledge Hub for yourself at: https://biodiversityknowledgehub.eu/ 

Brand new journal Estuarine Management and Technologies streamlines innovation in ecosystems conservation

There has been an increasing need to support the exchange of research related to the conservation and sustainable management of estuarine ecosystems by means of new-age technologies and approaches.

Where freshwater rivers meet seas and oceans lies a scientifically intriguing and ecologically important type of ecosystem. As estuarine ecosystems provide various and diverse services to humanity and the planet at large, including food security and natural buffers and filters in the events of storms and water pollution, there has been an increasing need to facilitate and support the exchange of research findings and ideas related to their conservation and sustainable management by means of new-age technology and novel approaches.

This is how a team of renowned and passionate scientists, headed by Dr. Soufiane Haddout (Ibn Tofail University, Morocco), took the decision to launch a brand new open-access, peer-reviewed scholarly, aptly titled Estuarine Management and Technologies. They explain the rationale behind the journal in a new editorial, published to mark the official launch of the journal.

Having already worked closely with the scientific publisher and technology provider Pensoft on the fine touches of the concept of the new academic title, the team opted to use Pensoft’s publishing platform of ARPHA. As a result, the new journal provides a seamless, end-to-end publishing experience, encompassing all stages between manuscript submission and article publication, indexation, dissemination and permanent archiving. 

Within the collaboration between the journal’s and Pensoft’s teams, Estuarine Management and Technologies will take advantage of various services offered by the ARPHA platform, including full-text automated export in machine-readable and minable JATS-XML format to over 60 relevant databases for scientific literature and data; semantically enriched and multimedia-friendly publications accessible in HTML; and rich statistics about the outreach and usage of each published article and its elements (e.g. figures and tables), including views, downloads, online mentions, and citations. 

The publishing platform’s in-house indexing team will continue their close work with the journal’s editors to ensure that the scholarly outlet retains highest quality and integrity, so that it covers the criteria for indexation at additional key databases that require individual evaluation. In the meantime, ARPHA’s technical and editorial teams will provide technical and customer support to authors, editors and reviewers. The marketing and promotion team of ARPHA will be also joining forces with the journal to boost the visibility and image of the new academic title.

During the launch phase, content accepted for publication following double-blinded peer review will be made public right away for free to both authors and readers, where the journal will be operating under a continuous publication model.

Estuarine Management and Technologies welcomes studies from a wide spectrum of disciplines, including physics, chemistry, geology, biology, and hydrology, with a focus on interdisciplinarity, multifaceted approaches and holistic perspectives.

“One crucial aspect of estuarine management is the sustainable use of resources to balance conservation with human needs. Striking this delicate equilibrium requires a holistic understanding of the intricate web of ecological interactions within estuarine environments. Advanced technologies, such as isotopic techniques, environmental DNA (eDNA) analysis, can provide insights into the biodiversity of estuarine ecosystems with unprecedented precision,”

explain Dr Haddout and his colleagues in the opening editorial.

Amongst the unique features of the new journal are several additional publication types, such as Expert View, Video Paper, Rapid Communication, Mini Review and Estuarine Scientists, where these have been added to traditional publication outputs (e.g. Research Paper, Review Paper, Data Paper) to foster collaboration between researchers and other stakeholders in the field.

The journal is also running an annual Trailblazing Talent in Estuarine Management and Technologies award intended to recognise and encourage young scientists and engineers at the forefront of cutting-edge research in estuarine management and technologies. Nominations and applications are currently open.

Estuarine Management and Technologies also welcomes applications for guest editors in order to further expand the journal and its immediate expert network.

“I am delighted to see the Estuarine Management and Technologies journal already live on the ARPHA platform. We are confident that this particularly important, yet so far quite overlooked area of study will greatly benefit from this highly promising journal,”

says Prof. Lyubomir Penev, CEO and founder of Pensoft and ARPHA.

“I am pleased to announce the launch of the Estuarine Management and Technologies journal on ARPHA, a decision rooted in our commitment to advancing the field. We believe that this strategic partnership will not only enhance the visibility and accessibility of our journal, but will also foster collaboration and innovation within the estuarine management and technologies community. We expect this alliance to be a catalyst for scholarly excellence, providing a robust platform for researchers and practitioners to share insights, address challenges, and propel the field forward. Together with ARPHA, we are confident in the positive impact our journal will have on shaping the future of estuarine management and technologies.”

says Dr. Soufiane Haddout, Editor-in-Chief and founder, Estuarine Management and Technologies.

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You can visit the journal website and sign up for its newsletter from the homepage.

You can also follow Estuarine Management and Technologies on X (formerly Twitter).

Pensoft’s statement on the European Union’s Conclusions on OA scholarly publishing

We are firm supporters of healthy competition that drives innovation and revolutionary technologies, while supporting freedom of choice.

On behalf of Pensoft Publishers, we express our support for the Conclusions on high-quality, transparent, open and equitable scholarly publishing, recently published by the Council of the European Union. We do share all concerns articulated in the document that highlight major inequities and outstanding issues in the scholarly publishing environment.

In our opinion, it is of utmost importance to promptly address the existing issues in the publishing system, where healthy competition can thrive and contribute to a reality safe from potential mono-/oligopolies and corporate capture.

We firmly believe that only an industry that leaves room for variously-scaled pioneers and startups is capable of leading a long-awaited shift to a high-quality, transparent, open and equitable scholarly publishing landscape aligning with the principles of FAIRness.

Yet, we shall acknowledge that the industry has so far failed to eradicate the most fundamental flaw of the past. In the beginning, the main aim of the Open Access (OA) movement was removing the barrier to access to publicly funded scientific knowledge and scrapping costly subscription fees.

Recently, however, the industry’s biggest players merely replaced it with a barrier to publication by introducing costly Article Processing Charges (APCs) and “big deals” signed between top commercial publishers and academic institutions or national library consortia. 

As a result, small and middle-sized open-access publishers, which have, ironically, been the ones to lead the change and transition to OA by default and oppose the large commercial publishers’ agenda, were effectively pushed out of the scene. Further, we are currently witnessing a situation where OA funds are mostly going to the ones who used to oppose OA.

So, we strongly support measures that ensure an inclusive and FAIR competition, which could in turn prompt quality, sustainability and reasonable pricing in scholarly publishing. In our opinion, an environment like this would actually foster equality and equity amongst all publishers, either small, large, non-profit, commercial, institutional or society-based. 

One of the main points of the conclusions is a recommendation for a general use of the Diamond OA model, where no charges apply to either researchers or readers. While we fully support the Diamond OA model, we wish to stress on the fact that considerable concerns about the sustainability of existing Diamond OA models remain.

On the one hand, there are OA agreements (also known as read-and-publish, publish-and-read, transformative agreements etc.), typically signed between top publishers and top research institutions/consortia. This OA model is often mistakenly referred to as “Diamond OA”, since authors affiliated with those institutions are not concerned with providing the APC payment – either by paying themselves or applying for funding. Instead, the APCs are paid centrally. Most often, however, journals published by those publishers are still directly charging authors who are not members of the signed institutions with, in our opinion, excessive APCs. Even if those APCs are covered by a signed institution, these are still considerable funds that are being navigated away from actual research work. 

On the other hand, there are independent researchers, in addition to smaller or underfunded institutions, typically – yet far from exclusively – located in the developing world, who are effectively being discriminated against. 

In conclusion, this type of contracts are shutting away smaller actors from across academia just like they used to be under the subscription-based model. Hereby, we wish to express our full agreement with the Council of the European Union’s conclusion, that “it is essential to avoid situations where researchers are limited in their choice of publication channels due to financial capacities rather than quality criteria”.

There are also several alternative OA models designed to lessen the burden of publication costs for both individual researchers, libraries and journal owners. However, each comes with its own drawbacks. Here – we believe – is where the freedom of choice is perhaps most needed, in order to keep researchers’ and publishers’  best interests at heart. 

One of those alternatives is open-source publishing platforms, which – by design – are well-positioned to deliver actual Diamond OA for journals, while maintaining independence from commercial publishers. However, the operational model of this type of publishing and hosting platforms would most often only provide a basic infrastructure for editors to publish and preserve content. As a result, the model might require extra staff and know-how, while remaining prone to human errors. Additionally, a basic technological infrastructure could impede the FAIRness of the published output, which demands advanced and automated workflows to appropriately format, tag semantically and export scientific outputs promptly after publication.

Similarly, large funders and national consortia have put their own admirable efforts to step up and provide another option for authors of research and their institutions. Here, available funds are allocated to in-house Diamond OA publishing platforms that have originally been designed according to the policies and requirements of the respective funding programme or state. However, this type of support – while covering a large group of authors (e.g. based in a certain country, funded under a particular programme, and/or working in a specific research field) – still leaves many behind, including multinational or transdisciplinary teams. Additionally, due to the focus on ‘mass supply’, most of these OA publishing platforms have so far been unable to match their target user base with the appropriate scale of services and support.

What we have devised and developed at Pensoft with the aim to contribute to the pool of available choices is an OA publishing model, whose aim is to balance cost affordability, functionality, reliability, transparency and long-term sustainability. 

To do so, we work with journal owners, institutions and societies to create their own business and operational model for their journals that matches two key demands of the community: (1) free to read and free to publish OA model, and, (2) services and infrastructure suited for Diamond OA at a much lower cost, compared to those offered by major commercial publishers.

In our opinion, independent small publishers differentiate from both large commercial publishers and publicly funded providers by relying to a greater extent on innovative technology and close employee collaboration.

As a result, they are capable of delivering significantly more customisable solutions – including complete packages of automated and human-provided services – and, ultimately, achieving considerably lower-cost publishing solutions. Likewise, they might be better suited to provide much more flexible business models, so that libraries and journal owners can easily support (subsets of or all) authors to the best of their capabilities.

While we realise that there is no faultless way to high-quality, transparent, open and equitable scholarly publishing, we are firm supporters of an environment, where healthy competition prompts the continuous invention and evolution of tools and workflows

Our own motivation to invest in scholarly publishing technology and its continuous refinement and advancement, coupled with a number of in-house and manually provided services, which is reflected in our APC policies, aligns with the Council’s statement that “scientific practices for ensuring reproducibility, transparency, sharing, rigour and collaboration are important means of achieving a publishing system responsive to the challenges of democratic, modern and digitalised societies.”

Our thinking is that – much like in any other industry – what drives innovation and revolutionary technologies is competition. To remain healthy and even self-policing, however, this competition needs to embrace transparency, equity and inclusivity.

Last, but not least, researchers need to have the freedom to choose from plenty of options when deciding where and how to publish their work!

Beware of scientific scams! Tips to avoid predatory publishing in biological journals

Predatory publishing has been growing exponentially, with severe consequences for society and the environment.

Guest blog post by Cássio Cardoso Pereira, Gabriela França Fernandes, and Walisson Kenedy Siqueira

We are bombarded day and night with slot-machine invitations from journals, books, and events such as congresses and lectures. Predatory publishing has reached alarming levels in biology, which is why we published an editorial in the journal Neotropical Biology and Conservation to alert the community, show the modus operandi of these publishers, and pass on good practices so that researchers, especially beginners, can escape this trap.

Piggybacking on the open access movement, numerous predatory publishers have emerged in search of easy profits. These cybercriminals take advantage of the publish-or-perish culture without providing any information about their peer-review protocols, concerned not with the scientific, bibliographic, or ethical aspects of publishing, but with the money received from authors.

The number of predatory publishers has grown exponentially in recent years and spread across all areas of knowledge, including biology. It is a common practice of these journals, often with an equally fake editorial staff, to send electronic invitations to potential authors to publish articles. These invitations are often facilitated by initial screenings of the emails of corresponding authors available on the internet. The emailed invitations from the supposed editors often stress that the author’s work is sound and, since it has already gone through the scrutiny of the editorial board, requires only the payment of a fee to publish it, with no need for further peer review.

Invitations to join the editorial board of these journals are also frequent, mostly intended to take advantage of the scientists’ prestige. Instead of editing articles, these invited editors are used as poster boys, i.e., they have their names published on the journal’s website, thus attracting unsuspecting authors to submit their manuscripts.

These journals are generally not included in the directory of open access journals (DOAJ) and are not indexed in the main bibliometric databases, such as Google Scholar, SciELO, Scopus, and Web of Science, for the simple reason that they do not meet their inclusion criteria. The websites of these journals often have little information about the editorial board, have a fake International Standard Serial Number (ISSN), lack transparency regarding their scope, provide no indication of a policy of retraction, have no transparency regarding copyright transfer, and provide very vague contact information, often omitting the address of the journal’s office.

In addition to papers, there are also invitations to publish books and book chapters with fake International Standard Book Numbers and dubious editorial boards. There is also a flood of invitations to predatory meetings, such as online conferences, symposia, workshops, and lectures. These often have websites that are equally confusing and never linked to a university or a postgraduate program. Above all, one should consult advisors, supervisors, or senior colleagues about the invitation and the sender’s academic reputation. In any case, one must pay attention not only to the citation metrics but also, mainly, to their editorial board, ISSN, ISBN, contact information, and relationships with recognized institutions.

When we analyze the impacts of predatory publishing on the scientific community, the worst problems are:

  • the dissemination of erroneous information about scientific problems of interest
  • the facilitation of plagiarism
  • the waste of public resources intended for publication
  • the appointment of researchers at universities and research institutes based on curricula full of doubtful publications, generating negative cascading effects that undermine higher education as a whole.

The damage done to society can be even worse. Governments, large companies, and decision-makers can be misled by false information, resulting in attitudes that undermine responses to major human problems such as climate change, biodiversity, and pandemics.

Efforts to fight predatory publishers require collaboration and support at higher levels. Governments need to create regulatory agencies that carefully and systematically evaluate the activities carried out by scientific journals. Science funding agencies should require that publication fees be paid only to publishers that adhere to an internationally recognized set of transparency and ethical rules. We need to discuss our values and incentives in the academic community, so we can start prioritizing quality over quantity. This would provide a reference point for research, help design coherent interventions, and improve information and public policy in favor of society and the environment.

Reference:

Pereira CC, Mello MAR, Negreiros D, Figueiredo JCG, Kenedy-Siqueira W, Maia LR, Fernandes S, Fernandes GFC, Ponce de Leon A, Ashworth L, Oki Y, de Castro GC, Aguilar R, Fearnside PM, Fernandes GW (2023) Beware of scientific scams! Hints to avoid predatory publishing in biological journals. Neotropical Biology and Conservation 18(2): 97-105. https://doi.org/10.3897/neotropical.18.e108887

Eye for Detail: Papers in Pensoft journals sport a new look

As behaviours and needs of readers change, we strive to keep up with the times. Let’s run through what & why has changed to the PDF format.

Readers at some of the journals published by Pensoft, who have downloaded/printed a publication or ordered a physical copy of a journal issue over the last few weeks, might be in for a surprise concerning the layout of the PDF format of the articles. 

Research papers published in ZooKeys demonstrating the former (left) and the current (right) article layout seen in the PDF format. 

Even though it’s been years since online publishing has become the norm in how we are consuming information – including scientific publications – we understand that academia is still very much fond of traditional, often paper-based, article layout format: the one you use when accessing a PDF file or a print copy, rather than directly scrolling down through the HTML version of the article. 

Even if today large orders of printed volumes from overseas are the exception, rather than the rule, we know we have readers of ours who regularly print manuscripts at home or savе them on their devices. Trends like this have already led to many journals first abandoning the physical- for digital-first, then transitioning to digital-only publication format.

Meanwhile, it is true that needs and demands have fundamentally changed in recent times. 

As we speak, readers are accessing PDF files from much higher-quality desktops, in order to skim through as much content as possible. 

In the meantime, authors are relying on greater-quality cameras to document their discoveries, while using advanced computational tools capable of generating and analysing extra layers of precise data. While producing more exhaustive research, however, it is also of key importance that their manuscripts are processed and published as rapidly as possible.

So, let’s run through the updates and give you our reasoning for their added value to readers and authors.

Revised opening page

One of the major changes is the one to the format of the first page. By leaving some blank space on the left, we found a dedicated place for important article metadata, i.e. academic editor, date of manuscript submission / acceptance / publication, citation details and licence. As a result, we “cleaned up” the upper part of the page, so that it can better highlight the authors and their affiliations. 

Bottom line: The new layout provides a better structure to the opening page to let readers find key article metadata at a glance. 

Expand as much – or as little – as comfortable

As you might know, journals published by Pensoft have been coming in different formats and sizes. Now, we have introduced the standard A4 page size, where the text is laid in a single column that has been slightly indented to the right, as seen above. Whenever a figure or a table is used in a manuscript, however, it is expanded onto the whole width of the page.

Before giving our reasons why, let’s see what were the specific problems that we address.

Case study 1

Some of our signature journals, including ZooKeys, PhytoKeys and MycoKeys, have become quite recognisable with their smaller-than-average B5 format, widely appreciated by people who would often be seen carrying around a copy during a conference or an international flight.

However, in recent times, authors began to embrace good practices in research like open sharing of data and code, which resulted in larger and more complex tables. Similarly, their pocket-sized cameras would capture much higher-resolution photos capable of revealing otherwise minute morphological characters. Smaller page size would also mean that often there would be pages between an in-text reference of a figure or a table and the visual itself.

So, here we faced an obvious question: shall we deprive their readers from all those detailed insights into the published studies?

Case study 2

Meanwhile, other journals, such as Herpetozoa, Zoosystematics and Evolution and Deutsche Entomologische Zeitschrift, had long been operating in A4 size, thereby providing their readers with a full view of the figures in their publications. 

Yet, the A4 format brought up another issue: the lines were too long for the eye comfort of their readers. 

What they did was organise their pages into two-column format. While this sounds like a good and quite obvious decision, the format – best known from print newspapers – is pretty inconvenient when accessed digitally. Since the readers would like to zoom in on the PDF page or simply access the article on mobile, they will need to scroll up and down several times per page. 

In addition, the production of a two-column text is technologically more challenging, which results in extra production time.

Bottom line: The new layout allows journals to not sacrifice image quality for text readability and vice versa. As a bonus, authors enjoy faster publication for their papers.

Simplified font

If you have a closer look at the PDF file, you would notice that print-ready papers have also switched to a more simplistic – yet easier to the eye – font. Again, the update corresponds to today’s digital-native user behaviour, where readers often access PDF files from devices of various resolutions and skim through the text, as opposed to studying its content in detail.

In fact, the change is hardly new, since the same font has long been utilised for the webpages (HTML format) of the publications across all journals.

Bottom line: The slightly rounder and simplified font prompts readability, thereby allowing for faster and increased consumption of content. 

What’s the catch? How about characters and APCs?

While we have been receiving a lot of positive feedback from editors, authors and readers, there has been a concern that the updates would increase the publication charges, wherever these are estimated based on page numbers.

Having calculated the lines and characters in the new layout format, we would like to assure you that there is no increase in the numbers of characters or words between the former and current layout formats. In fact, due to the additional number of lines fitting in an A4 page as opposed to B5, authors might be even up for a deal.

________

* At the time of the writing, the new paper layout has not been rolled out at all journals published by Pensoft. However, most of the editorial boards have already confirmed they would like to incorporate the update.

________

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Pensoft among the first 27 publishers to share prices & services via the Journal Comparison Service by Plan S

All journals published by Pensoft – each using the publisher’s self-developed ARPHA Platform – provide extensive and transparent information about their costs and services in line with the Plan S principles.

In support of transparency and openness in scholarly publishing and academia, the scientific publisher and technology provider Pensoft joined the Journal Comparison Service (JCS) initiative by cOAlition S, an alliance of national funders and charitable bodies working to increase the volume of free-to-read research. 

As a result, all journals published by Pensoft – each using the publisher’s self-developed ARPHA Platform – provide extensive and transparent information about their costs and services in line with the Plan S principles.

The JCS was launched to aid libraries and library consortia – the ones negotiating and participating in Open Access agreements with publishers – by providing them with everything they need to know in order to determine whether the prices charged by a certain journal are fair and corresponding to the quality of the service. 

According to cOAlition S, an increasing number of libraries and library consortia from Europe, Africa, North America, and Australia have registered with the JCS over the past year since the launch of the portal in September 2021.

While access to the JCS is only open to librarians, individual researchers may also make use of the data provided by the participating publishers and their journals. 

This is possible through an integration with the Journal Checker Tool, where researchers can simply enter the name of the journal of interest, their funder and affiliation (if applicable) to check whether the scholarly outlet complies with the Open Access policy of the author’s funder. A full list of all academic titles that provide data to the JCS is also publicly available. By being on the list means a journal and its publisher do not only support cOAlition S, but they also demonstrate that they stand for openness and transparency in scholarly publishing.

“We are delighted that Pensoft, along with a number of other publishers, have shared their price and service data through the Journal Comparison Service. Not only are such publishers demonstrating their commitment to open business models and cultures but are also helping to build understanding and trust within the research community.”

said Robert Kiley, Head of Strategy at cOAlition S. 

***

About cOAlition S:

On 4 September 2018, a group of national research funding organisations, with the support of the European Commission and the European Research Council (ERC), announced the launch of cOAlition S, an initiative to make full and immediate Open Access to research publications a reality. It is built around Plan S, which consists of one target and 10 principles. Read more on the cOAlition S website.

About Plan S:

Plan S is an initiative for Open Access publishing that was launched in September 2018. The plan is supported by cOAlition S, an international consortium of research funding and performing organisations. Plan S requires that, from 2021, scientific publications that result from research funded by public grants must be published in compliant Open Access journals or platforms. Read more on the cOAlition S website.